Strain Fitness in Pantoea sp. MT58 around IAI47_08205

Experiment: Ying_AminoAcid20 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 2
1,733,046	+		IAI47_08195	0.87	+1.4
1,733,046	+		IAI47_08195	0.87	-0.5
1,733,047	-		IAI47_08195	0.87	-1.8
1,733,047	-		IAI47_08195	0.87	-1.5
1,733,047	-		IAI47_08195	0.87	-3.0
1,733,081	-		IAI47_08195	0.88	-0.8
1,733,183	+				-1.7
1,733,183	+				-0.3
1,733,312	-				-1.4
1,733,441	+				-3.7
1,733,441	+				-1.8
1,733,441	+				-0.8
1,733,441	+				-1.5
1,733,442	-				+0.8
1,733,442	-				-1.0
1,733,442	-				-0.7
1,733,442	-				-1.9
1,733,442	-				-1.2
1,733,445	+				-2.9
1,733,445	+				-3.6
1,733,445	+				-1.1
1,733,445	+				-1.1
1,733,446	-				-1.2
1,733,446	-				-0.5
1,733,446	-				-1.2
1,733,446	-				-2.2
1,733,536	+				-0.8
1,733,536	+				-2.2
1,733,537	-				+0.2
1,733,553	+				-3.2
1,733,554	-				-1.4
1,733,577	+				-3.4
1,733,577	+				-0.5
1,733,577	+				-1.9
1,733,578	-				-2.0
1,733,605	+				-1.4
1,733,606	-				-1.7
1,733,606	-				-1.4
1,733,612	+				-0.5
1,733,612	+				-2.8
1,733,613	-				-2.1
1,733,653	+				+0.0
1,733,663	+				+0.1
1,733,663	+				-0.6
1,733,664	-				+1.7
1,733,664	-				-0.1
1,733,664	-				-0.5
1,733,664	-				-0.4
1,733,704	-				+1.4
1,733,762	+		IAI47_08200	0.27	-1.2
1,733,804	+		IAI47_08200	0.40	-0.2
1,733,804	+		IAI47_08200	0.40	+0.8
1,733,804	+		IAI47_08200	0.40	-0.1
1,733,804	+		IAI47_08200	0.40	-0.2
1,733,804	+		IAI47_08200	0.40	-1.3
1,733,805	-		IAI47_08200	0.41	-0.7
1,733,964	-				+0.8
1,733,984	+				-0.6
1,733,991	+				-0.4
1,733,991	+				+0.8
1,733,991	+				-0.7
1,733,992	-				+0.9
1,733,992	-				-0.9
1,733,994	+				+0.6
1,733,995	-				-0.5
1,734,016	+				-0.2
1,734,016	+				-0.5
1,734,016	+				+1.3
1,734,017	-				+0.2
1,734,017	-				-0.9
1,734,017	-				-1.3
1,734,017	-				-0.4
1,734,017	-				-1.4
1,734,020	+				-0.9
1,734,020	+				+0.4
1,734,021	-				-0.2
1,734,021	-				+0.3
1,734,021	-				-1.7
1,734,021	-				-0.4
1,734,021	-				-2.4
1,734,048	+				-1.2
1,734,049	-				-1.6
1,734,049	-				-0.6
1,734,051	-				-1.2
1,734,051	-				-1.4
1,734,077	+				-0.4
1,734,078	-				-1.5
1,734,078	-				-1.4
1,734,078	-				-2.4
1,734,080	-				-1.0
1,734,111	+				-0.7
1,734,111	+				-0.2
1,734,111	+				-1.2
1,734,111	+				-0.8
1,734,111	+				+0.2
1,734,111	+				+2.4
1,734,111	+				-1.3
1,734,111	+				+0.2
1,734,111	+				-0.2
1,734,111	+				-0.2
1,734,112	-				+0.8
1,734,112	-				+0.6
1,734,112	-				-1.0
1,734,112	-				-0.2
1,734,112	-				-1.0
1,734,173	+		IAI47_08205	0.11	-1.2
1,734,225	-		IAI47_08205	0.15	+0.4
1,734,374	+		IAI47_08205	0.25	-1.7
1,734,375	-		IAI47_08205	0.25	-2.1
1,734,419	+		IAI47_08205	0.28	-0.5
1,734,420	-		IAI47_08205	0.28	-0.6
1,734,422	+		IAI47_08205	0.28	-2.3
1,734,422	+		IAI47_08205	0.28	-2.8
1,734,422	+		IAI47_08205	0.28	-1.5
1,734,422	+		IAI47_08205	0.28	-0.9
1,734,422	+		IAI47_08205	0.28	+1.0
1,734,422	+		IAI47_08205	0.28	-0.5
1,734,423	-		IAI47_08205	0.28	+0.0
1,734,423	-		IAI47_08205	0.28	-1.5
1,734,423	-		IAI47_08205	0.28	-1.7
1,734,423	-		IAI47_08205	0.28	-2.1
1,734,423	-		IAI47_08205	0.28	-1.2
1,734,423	-		IAI47_08205	0.28	-0.1
1,734,423	-		IAI47_08205	0.28	-0.8
1,734,423	-		IAI47_08205	0.28	+0.2
1,734,423	-		IAI47_08205	0.28	-1.8
1,734,426	+		IAI47_08205	0.28	+0.8
1,734,426	+		IAI47_08205	0.28	+0.2
1,734,426	+		IAI47_08205	0.28	-0.6
1,734,426	+		IAI47_08205	0.28	-3.3
1,734,426	+		IAI47_08205	0.28	+0.8
1,734,426	+		IAI47_08205	0.28	-0.8
1,734,426	+		IAI47_08205	0.28	+0.2
1,734,427	-		IAI47_08205	0.28	-2.3
1,734,427	-		IAI47_08205	0.28	+0.4
1,734,427	-		IAI47_08205	0.28	-1.5
1,734,427	-		IAI47_08205	0.28	-1.8
1,734,427	-		IAI47_08205	0.28	-1.4
1,734,427	-		IAI47_08205	0.28	+0.1
1,734,427	-		IAI47_08205	0.28	-0.7
1,734,427	-		IAI47_08205	0.28	-0.0
1,734,480	-		IAI47_08205	0.32	-0.6
1,734,486	+		IAI47_08205	0.32	-0.4
1,734,528	+		IAI47_08205	0.35	+0.0
1,734,528	+		IAI47_08205	0.35	-1.5
1,734,528	+		IAI47_08205	0.35	+1.5
1,734,530	+		IAI47_08205	0.35	-0.5
1,734,530	+		IAI47_08205	0.35	-1.6
1,734,530	+		IAI47_08205	0.35	+0.8
1,734,530	+		IAI47_08205	0.35	-0.4
1,734,530	+		IAI47_08205	0.35	-1.2
1,734,530	+		IAI47_08205	0.35	-2.7
1,734,530	+		IAI47_08205	0.35	-2.2
1,734,531	-		IAI47_08205	0.35	-1.4
1,734,531	-		IAI47_08205	0.35	-1.0
1,734,531	-		IAI47_08205	0.35	-1.9
1,734,627	-		IAI47_08205	0.42	-1.8
1,734,751	-		IAI47_08205	0.50	+1.5
1,734,767	+		IAI47_08205	0.51	-1.0
1,734,768	-		IAI47_08205	0.51	-0.8
1,734,768	-		IAI47_08205	0.51	-1.0
1,734,768	-		IAI47_08205	0.51	-0.7
1,734,768	-		IAI47_08205	0.51	-1.4
1,734,768	-		IAI47_08205	0.51	+2.4
1,734,830	+		IAI47_08205	0.55	-0.9
1,734,830	+		IAI47_08205	0.55	-0.7
1,734,892	-		IAI47_08205	0.59	-1.0
1,734,926	+		IAI47_08205	0.62	+0.8
1,734,932	+		IAI47_08205	0.62	+0.3
1,734,933	-		IAI47_08205	0.62	+0.2
1,734,933	-		IAI47_08205	0.62	+0.8
1,734,933	-		IAI47_08205	0.62	-1.6
1,734,933	-		IAI47_08205	0.62	-1.0
1,734,950	+		IAI47_08205	0.63	-1.5
1,734,965	+		IAI47_08205	0.64	-0.8
1,734,966	-		IAI47_08205	0.64	-1.9
1,735,080	+		IAI47_08205	0.72	+0.6
1,735,081	-		IAI47_08205	0.72	+0.2
1,735,130	-		IAI47_08205	0.75	+0.8
1,735,182	-		IAI47_08205	0.79	-0.9
1,735,215	+		IAI47_08205	0.81	-0.2
1,735,215	+		IAI47_08205	0.81	-1.2
1,735,215	+		IAI47_08205	0.81	-1.7
1,735,307	+		IAI47_08205	0.87	-0.2
1,735,308	-		IAI47_08205	0.87	-1.1
1,735,308	-		IAI47_08205	0.87	+0.2
1,735,314	-		IAI47_08205	0.88	-2.1
1,735,347	+				-2.2
1,735,347	+				-0.2
1,735,348	-				-1.7
1,735,348	-				-0.5
1,735,348	-				-0.4
1,735,348	-				+1.4
1,735,365	+				-0.6
1,735,365	+				-2.7
1,735,365	+				-0.7
1,735,365	+				-0.1
1,735,365	+				-2.4
1,735,365	+				-1.6
1,735,365	+				-1.5
1,735,366	-				-1.0
1,735,366	-				-0.8
1,735,491	+				+0.3
1,735,491	+				-0.8
1,735,491	+				-0.4
1,735,492	-				+0.3
1,735,492	-				+0.2
1,735,504	-				-0.2
1,735,544	+				-0.6
1,735,553	-				+1.4
1,735,553	-				-2.0
1,735,561	+				+0.0
1,735,561	+				+1.0
1,735,562	-				-0.6
1,735,574	-				+0.8
1,735,585	+				-0.8
1,735,585	+				+0.8
1,735,585	+				-0.0
1,735,614	-				-0.8
1,735,736	+				-1.0
1,735,737	-				+0.0
1,735,748	+				-0.2
1,735,748	+				+0.9
1,735,756	+				-0.9
1,735,756	+				-2.4
1,735,756	+				+2.0
1,735,756	+				-0.2
1,735,757	-				+0.8
1,735,757	-				+0.1
1,735,757	-				+0.6
1,735,902	+		IAI47_08210	0.26	+0.4
1,735,902	+		IAI47_08210	0.26	-0.2
1,735,902	+		IAI47_08210	0.26	+0.2
1,735,902	+		IAI47_08210	0.26	-0.2
1,735,902	+		IAI47_08210	0.26	-1.0
1,735,903	-		IAI47_08210	0.27	-2.5
1,735,903	-		IAI47_08210	0.27	-1.4
1,735,903	-		IAI47_08210	0.27	+0.8
1,735,903	-		IAI47_08210	0.27	+0.5
1,735,903	-		IAI47_08210	0.27	-0.2
1,735,903	-		IAI47_08210	0.27	-0.9
1,736,052	-		IAI47_08210	0.45	-0.2
1,736,052	-		IAI47_08210	0.45	+0.6
1,736,052	-		IAI47_08210	0.45	-0.5
1,736,052	-		IAI47_08210	0.45	-0.8
1,736,109	+		IAI47_08210	0.52	+0.4
1,736,110	-		IAI47_08210	0.52	+1.6
1,736,188	+		IAI47_08210	0.61	-1.2
1,736,189	-		IAI47_08210	0.61	-0.2
1,736,211	+		IAI47_08210	0.64	-0.2
1,736,212	-		IAI47_08210	0.64	+1.4
1,736,212	-		IAI47_08210	0.64	+0.4
1,736,249	+		IAI47_08210	0.68	+0.3
1,736,249	+		IAI47_08210	0.68	-0.6
1,736,250	-		IAI47_08210	0.69	-0.9
1,736,250	-		IAI47_08210	0.69	-1.0
1,736,343	+		IAI47_08210	0.80	+1.2
1,736,343	+		IAI47_08210	0.80	-0.1
1,736,344	-		IAI47_08210	0.80	-0.2
1,736,344	-		IAI47_08210	0.80	+0.3
1,736,344	-		IAI47_08210	0.80	+1.2
1,736,344	-		IAI47_08210	0.80	-0.1
1,736,344	-		IAI47_08210	0.80	-0.5
1,736,346	+		IAI47_08210	0.80	+0.2
1,736,346	+		IAI47_08210	0.80	+1.4
1,736,346	+		IAI47_08210	0.80	+0.0
1,736,347	-		IAI47_08210	0.80	-0.5
1,736,351	+		IAI47_08210	0.81	+0.6
1,736,352	-		IAI47_08210	0.81	-0.2
1,736,398	+		IAI47_08210	0.87	-1.2
1,736,435	-				-0.1
1,736,435	-				-1.2
1,736,472	+				-0.0
1,736,472	+				+1.1