Strain Fitness in Pantoea sp. MT58 around IAI47_07930

Experiment: Ying_AminoAcid20 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 2
1,678,801	+		IAI47_07925	0.32	-0.8
1,678,801	+		IAI47_07925	0.32	-0.7
1,678,802	-		IAI47_07925	0.32	+0.4
1,678,802	-		IAI47_07925	0.32	+0.6
1,678,811	-		IAI47_07925	0.33	+0.0
1,678,841	+		IAI47_07925	0.36	-0.4
1,678,841	+		IAI47_07925	0.36	-2.5
1,678,841	+		IAI47_07925	0.36	-1.0
1,678,842	-		IAI47_07925	0.36	-0.2
1,678,989	+		IAI47_07925	0.52	-0.8
1,678,990	-		IAI47_07925	0.52	+0.5
1,678,990	-		IAI47_07925	0.52	+0.8
1,679,022	+		IAI47_07925	0.56	-0.4
1,679,023	-		IAI47_07925	0.56	-0.9
1,679,023	-		IAI47_07925	0.56	+0.5
1,679,034	+		IAI47_07925	0.57	+0.6
1,679,034	+		IAI47_07925	0.57	-0.9
1,679,034	+		IAI47_07925	0.57	+1.1
1,679,035	-		IAI47_07925	0.57	+0.2
1,679,035	-		IAI47_07925	0.57	+1.1
1,679,035	-		IAI47_07925	0.57	+0.1
1,679,074	+		IAI47_07925	0.62	-0.0
1,679,075	-		IAI47_07925	0.62	-0.2
1,679,331	+		IAI47_07925	0.90	+1.8
1,679,331	+		IAI47_07925	0.90	+0.4
1,679,358	+				+1.4
1,679,358	+				-0.8
1,679,359	-				+1.1
1,679,359	-				-0.1
1,679,359	-				-1.2
1,679,381	+				-1.1
1,679,381	+				-0.5
1,679,394	+				+0.1
1,679,394	+				-0.8
1,679,394	+				+0.0
1,679,394	+				-1.2
1,679,420	+				-1.0
1,679,420	+				+0.6
1,679,422	+				-0.7
1,679,422	+				+1.6
1,679,423	-				+0.3
1,679,439	+				-1.3
1,679,580	+				+0.5
1,679,580	+				+2.0
1,679,580	+				+2.4
1,679,651	+				-0.8
1,679,663	+				+0.1
1,679,664	-				-0.2
1,679,664	-				+0.7
1,679,696	-				+0.0
1,679,722	+				-1.7
1,679,722	+				+0.8
1,679,723	-				+3.9
1,679,746	+				-0.5
1,679,749	+				+1.2
1,679,749	+				+0.6
1,679,749	+				+0.0
1,679,750	-				+0.3
1,679,760	+				-0.0
1,679,761	-				+1.0
1,679,761	-				+0.1
1,679,761	-				+0.2
1,679,761	-				+0.5
1,679,761	-				-0.4
1,679,761	-				-1.5
1,679,761	-				-0.1
1,679,778	-				-0.8
1,679,874	+		IAI47_07930	0.54	-1.5
1,679,883	+		IAI47_07930	0.59	-0.8
1,679,910	-		IAI47_07930	0.75	+0.5
1,679,952	+				-0.4
1,679,952	+				-0.1
1,679,953	-				-0.4
1,679,953	-				-0.3
1,679,955	+				+0.3
1,679,955	+				-0.5
1,679,955	+				-0.2
1,679,955	+				+0.9
1,679,955	+				+1.1
1,679,955	+				+1.5
1,679,955	+				+2.0
1,679,956	-				+2.1
1,679,956	-				+0.1
1,679,956	-				-0.5
1,679,960	+				+2.9
1,679,960	+				-0.1
1,679,960	+				-0.5
1,679,960	+				-0.5
1,679,960	+				+1.0
1,679,960	+				+1.2
1,679,960	+				+1.2
1,679,961	-				-0.0
1,679,961	-				+0.5
1,679,961	-				-0.2
1,679,998	-				-0.7
1,680,077	+				+0.4
1,680,077	+				-0.1
1,680,081	+				-0.5
1,680,081	+				-0.2
1,680,081	+				+0.2
1,680,081	+				-0.2
1,680,082	-				+0.5
1,680,082	-				+1.4
1,680,082	-				-0.2
1,680,082	-				+0.8
1,680,082	-				-1.4
1,680,130	+				+0.6
1,680,130	+				-0.2
1,680,131	-				-0.9
1,680,132	+				+0.0
1,680,133	-				+0.6
1,680,133	-				-0.3
1,680,141	+				+0.1
1,680,192	+		IAI47_07935	0.12	-0.2
1,680,262	-		IAI47_07935	0.18	+0.3
1,680,263	+		IAI47_07935	0.18	+0.5
1,680,263	+		IAI47_07935	0.18	+0.5
1,680,263	+		IAI47_07935	0.18	+0.1
1,680,263	+		IAI47_07935	0.18	-0.4
1,680,263	+		IAI47_07935	0.18	-0.1
1,680,263	+		IAI47_07935	0.18	+0.5
1,680,264	-		IAI47_07935	0.18	+0.3
1,680,264	-		IAI47_07935	0.18	+0.8
1,680,264	-		IAI47_07935	0.18	+0.0
1,680,277	-		IAI47_07935	0.19	-0.9
1,680,277	-		IAI47_07935	0.19	+0.5
1,680,288	+		IAI47_07935	0.20	-0.6
1,680,289	-		IAI47_07935	0.20	-0.8
1,680,289	-		IAI47_07935	0.20	+0.6
1,680,293	+		IAI47_07935	0.21	-0.2
1,680,296	+		IAI47_07935	0.21	-0.5
1,680,296	+		IAI47_07935	0.21	+0.4
1,680,296	+		IAI47_07935	0.21	-0.7
1,680,296	+		IAI47_07935	0.21	+0.7
1,680,296	+		IAI47_07935	0.21	-0.5
1,680,296	+		IAI47_07935	0.21	+0.8
1,680,296	+		IAI47_07935	0.21	+0.4
1,680,296	+		IAI47_07935	0.21	+0.7
1,680,297	-		IAI47_07935	0.21	+0.8
1,680,297	-		IAI47_07935	0.21	-0.2
1,680,297	-		IAI47_07935	0.21	+0.8
1,680,297	-		IAI47_07935	0.21	+0.3
1,680,330	+		IAI47_07935	0.24	+0.6
1,680,331	-		IAI47_07935	0.24	+0.2
1,680,331	-		IAI47_07935	0.24	+0.4
1,680,357	+		IAI47_07935	0.26	-0.6
1,680,358	-		IAI47_07935	0.26	+0.4
1,680,390	+		IAI47_07935	0.29	+1.3
1,680,391	-		IAI47_07935	0.29	-0.2
1,680,391	-		IAI47_07935	0.29	+0.7
1,680,391	-		IAI47_07935	0.29	+1.8
1,680,391	-		IAI47_07935	0.29	+0.6
1,680,391	-		IAI47_07935	0.29	+0.1
1,680,446	+		IAI47_07935	0.33	-0.5
1,680,446	+		IAI47_07935	0.33	+0.1
1,680,446	+		IAI47_07935	0.33	+0.3
1,680,446	+		IAI47_07935	0.33	+0.5
1,680,447	-		IAI47_07935	0.33	+0.8
1,680,447	-		IAI47_07935	0.33	-0.2
1,680,447	-		IAI47_07935	0.33	-0.9
1,680,447	-		IAI47_07935	0.33	+1.4
1,680,450	+		IAI47_07935	0.34	-0.4
1,680,488	+		IAI47_07935	0.37	+0.1
1,680,488	+		IAI47_07935	0.37	+2.8
1,680,488	+		IAI47_07935	0.37	+0.0
1,680,489	-		IAI47_07935	0.37	-1.0
1,680,489	-		IAI47_07935	0.37	-0.2
1,680,489	-		IAI47_07935	0.37	-2.1
1,680,489	-		IAI47_07935	0.37	+1.2
1,680,489	-		IAI47_07935	0.37	+0.3
1,680,489	-		IAI47_07935	0.37	+0.8
1,680,497	+		IAI47_07935	0.37	+0.8
1,680,497	+		IAI47_07935	0.37	-2.2
1,680,498	-		IAI47_07935	0.38	-0.5
1,680,546	+		IAI47_07935	0.41	+0.8
1,680,546	+		IAI47_07935	0.41	-0.2
1,680,546	+		IAI47_07935	0.41	+0.6
1,680,614	+		IAI47_07935	0.47	-1.5
1,680,614	+		IAI47_07935	0.47	+0.2
1,680,615	-		IAI47_07935	0.47	+1.0
1,680,624	-		IAI47_07935	0.48	-1.0
1,680,624	-		IAI47_07935	0.48	-1.5
1,680,638	+		IAI47_07935	0.49	+0.5
1,680,638	+		IAI47_07935	0.49	-0.2
1,680,639	-		IAI47_07935	0.49	-0.0
1,680,677	-		IAI47_07935	0.52	-1.8
1,680,685	+		IAI47_07935	0.53	-0.2
1,680,686	-		IAI47_07935	0.53	-0.1
1,680,696	+		IAI47_07935	0.54	+0.8
1,680,696	+		IAI47_07935	0.54	-1.8
1,680,696	+		IAI47_07935	0.54	+0.1
1,680,696	+		IAI47_07935	0.54	+0.2
1,680,696	+		IAI47_07935	0.54	+0.1
1,680,722	+		IAI47_07935	0.56	-0.6
1,680,723	-		IAI47_07935	0.56	+0.8
1,680,723	-		IAI47_07935	0.56	+1.2
1,680,723	-		IAI47_07935	0.56	+0.1
1,680,743	+		IAI47_07935	0.58	+0.4
1,680,800	+		IAI47_07935	0.62	+0.8
1,680,800	+		IAI47_07935	0.62	+0.2
1,680,800	+		IAI47_07935	0.62	+1.1
1,680,801	-		IAI47_07935	0.62	-0.2
1,680,801	-		IAI47_07935	0.62	+0.1
1,680,801	-		IAI47_07935	0.62	+1.6
1,680,801	-		IAI47_07935	0.62	-1.0
1,680,801	-		IAI47_07935	0.62	+0.0
1,680,810	+		IAI47_07935	0.63	-0.8
1,680,811	-		IAI47_07935	0.63	-0.2
1,680,858	+		IAI47_07935	0.67	+0.6
1,680,858	+		IAI47_07935	0.67	+1.1
1,680,859	-		IAI47_07935	0.67	+0.4
1,680,859	-		IAI47_07935	0.67	+2.8
1,680,859	-		IAI47_07935	0.67	-0.2
1,680,859	-		IAI47_07935	0.67	-0.6
1,680,860	+		IAI47_07935	0.67	-0.2
1,680,860	+		IAI47_07935	0.67	+0.0
1,680,860	+		IAI47_07935	0.67	-0.2
1,680,861	-		IAI47_07935	0.67	-1.0
1,680,891	+		IAI47_07935	0.70	+0.4