Strain Fitness in Pantoea sp. MT58 around IAI47_07620

Experiment: Ying_AminoAcid20 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 2
1,612,740	+		IAI47_07615	0.58	-0.6
1,612,794	+		IAI47_07615	0.62	-0.5
1,612,794	+		IAI47_07615	0.62	+0.0
1,612,794	+		IAI47_07615	0.62	+0.5
1,612,794	+		IAI47_07615	0.62	+0.8
1,612,794	+		IAI47_07615	0.62	+0.1
1,612,795	-		IAI47_07615	0.62	-0.8
1,612,795	-		IAI47_07615	0.62	+0.2
1,612,824	+		IAI47_07615	0.63	+0.2
1,612,834	+		IAI47_07615	0.64	+0.2
1,612,834	+		IAI47_07615	0.64	+1.0
1,612,834	+		IAI47_07615	0.64	+0.8
1,612,834	+		IAI47_07615	0.64	+0.2
1,612,834	+		IAI47_07615	0.64	+0.0
1,612,834	+		IAI47_07615	0.64	+0.8
1,612,834	+		IAI47_07615	0.64	+2.4
1,612,835	-		IAI47_07615	0.64	+0.5
1,612,835	-		IAI47_07615	0.64	+1.4
1,612,835	-		IAI47_07615	0.64	+0.1
1,612,888	+		IAI47_07615	0.67	-0.5
1,612,888	+		IAI47_07615	0.67	+0.6
1,612,888	+		IAI47_07615	0.67	+0.8
1,612,888	+		IAI47_07615	0.67	-2.2
1,612,888	+		IAI47_07615	0.67	-0.2
1,612,888	+		IAI47_07615	0.67	-0.8
1,612,888	+		IAI47_07615	0.67	+0.8
1,612,888	+		IAI47_07615	0.67	-0.3
1,612,889	-		IAI47_07615	0.67	-0.0
1,612,889	-		IAI47_07615	0.67	+0.4
1,612,889	-		IAI47_07615	0.67	-0.2
1,612,889	-		IAI47_07615	0.67	-0.1
1,612,941	+		IAI47_07615	0.70	+1.0
1,612,941	+		IAI47_07615	0.70	+0.3
1,612,941	+		IAI47_07615	0.70	+1.5
1,613,012	+		IAI47_07615	0.75	-0.4
1,613,012	+		IAI47_07615	0.75	+0.8
1,613,012	+		IAI47_07615	0.75	-1.9
1,613,013	-		IAI47_07615	0.75	+0.9
1,613,024	+		IAI47_07615	0.75	+0.6
1,613,025	-		IAI47_07615	0.75	-0.3
1,613,181	-		IAI47_07615	0.85	+0.4
1,613,189	+		IAI47_07615	0.85	-0.6
1,613,232	+		IAI47_07615	0.88	+1.2
1,613,232	+		IAI47_07615	0.88	+0.1
1,613,232	+		IAI47_07615	0.88	-0.7
1,613,233	-		IAI47_07615	0.88	+0.8
1,613,283	-				+0.4
1,613,327	-				-1.0
1,613,351	-				-0.6
1,613,351	-				-1.2
1,613,420	+				-0.7
1,613,436	+				-0.8
1,613,437	-				-2.1
1,613,437	-				+0.5
1,613,437	-				+0.5
1,613,490	+				+0.5
1,613,491	-				-1.5
1,613,491	-				-0.4
1,613,491	-				-1.1
1,613,491	-				+0.8
1,613,491	-				+0.8
1,613,494	+				+0.5
1,613,494	+				-0.2
1,613,495	-				+0.1
1,613,510	-				-0.7
1,613,510	-				-0.8
1,613,547	+				+0.8
1,613,547	+				+1.2
1,613,548	-				+0.8
1,613,548	-				-0.5
1,613,555	+				+0.1
1,613,555	+				+0.5
1,613,555	+				+0.9
1,613,555	+				-0.2
1,613,556	-				-0.3
1,613,556	-				+0.7
1,613,556	-				+0.5
1,613,556	-				+0.6
1,613,556	-				-0.2
1,613,574	+				-0.0
1,613,574	+				+2.4
1,613,574	+				-0.3
1,613,575	-				+1.3
1,613,575	-				-1.2
1,613,575	-				-0.5
1,613,575	-				-1.1
1,613,578	+				+1.6
1,613,578	+				-0.0
1,613,578	+				-0.7
1,613,578	+				+0.0
1,613,579	-				+0.1
1,613,579	-				-0.6
1,613,579	-				+0.3
1,613,579	-				+1.1
1,613,579	-				-0.9
1,613,579	-				-0.3
1,613,783	+		IAI47_07620	0.17	-0.8
1,613,784	-		IAI47_07620	0.17	+0.9
1,613,787	+		IAI47_07620	0.17	+0.4
1,613,787	+		IAI47_07620	0.17	-1.2
1,613,788	-		IAI47_07620	0.17	-0.1
1,613,812	+		IAI47_07620	0.19	-0.8
1,613,812	+		IAI47_07620	0.19	+1.8
1,613,812	+		IAI47_07620	0.19	-0.2
1,613,812	+		IAI47_07620	0.19	+0.8
1,613,813	-		IAI47_07620	0.19	-2.0
1,613,813	-		IAI47_07620	0.19	+0.5
1,613,863	-		IAI47_07620	0.23	+0.5
1,613,900	+		IAI47_07620	0.26	+0.5
1,613,900	+		IAI47_07620	0.26	-1.2
1,613,900	+		IAI47_07620	0.26	+0.1
1,613,918	+		IAI47_07620	0.27	-1.1
1,613,925	+		IAI47_07620	0.28	+0.5
1,613,926	-		IAI47_07620	0.28	+1.6
1,613,926	-		IAI47_07620	0.28	-1.1
1,613,932	+		IAI47_07620	0.28	-0.1
1,613,932	+		IAI47_07620	0.28	+0.9
1,613,933	-		IAI47_07620	0.28	+0.5
1,613,933	-		IAI47_07620	0.28	-1.2
1,614,185	+		IAI47_07620	0.47	+2.1
1,614,185	+		IAI47_07620	0.47	-1.2
1,614,186	-		IAI47_07620	0.47	-0.5
1,614,258	-		IAI47_07620	0.53	+0.4
1,614,275	+		IAI47_07620	0.54	-0.6
1,614,285	-		IAI47_07620	0.55	-0.4
1,614,312	+		IAI47_07620	0.57	+1.1
1,614,313	-		IAI47_07620	0.57	+1.9
1,614,354	+		IAI47_07620	0.60	-0.5
1,614,354	+		IAI47_07620	0.60	+1.8
1,614,354	+		IAI47_07620	0.60	+0.5
1,614,354	+		IAI47_07620	0.60	-1.5
1,614,355	-		IAI47_07620	0.60	-1.0
1,614,411	+		IAI47_07620	0.64	-0.2
1,614,412	-		IAI47_07620	0.64	-0.2
1,614,412	-		IAI47_07620	0.64	-1.0
1,614,427	-		IAI47_07620	0.65	+2.9
1,614,427	-		IAI47_07620	0.65	-1.5
1,614,427	-		IAI47_07620	0.65	-1.8
1,614,437	+		IAI47_07620	0.66	-0.4
1,614,438	-		IAI47_07620	0.66	+0.9
1,614,438	-		IAI47_07620	0.66	-0.1
1,614,438	-		IAI47_07620	0.66	-0.5
1,614,672	-		IAI47_07620	0.84	-0.0
1,614,699	-		IAI47_07620	0.86	+0.5
1,614,738	+		IAI47_07620	0.89	+0.4
1,614,739	-		IAI47_07620	0.89	+0.2
1,614,739	-		IAI47_07620	0.89	+0.1
1,614,838	-				-0.6
1,614,838	-				-0.1
1,614,885	+				-0.8
1,614,885	+				+1.5
1,614,885	+				+3.1
1,614,885	+				-0.2
1,614,885	+				-0.4
1,614,885	+				-0.4
1,614,885	+				-1.0
1,614,885	+				-0.2
1,614,886	-				-2.0
1,614,886	-				+0.2
1,614,886	-				+0.0
1,614,886	-				-0.4
1,614,886	-				+0.6
1,614,886	-				+0.3
1,614,886	-				-0.3
1,614,886	-				-0.4
1,614,886	-				+1.4
1,614,886	-				-0.6
1,614,886	-				+0.4
1,614,886	-				-1.0
1,614,886	-				-0.5
1,614,886	-				-0.2
1,614,897	+				-0.2
1,614,897	+				-0.8
1,614,898	-				-0.1
1,614,912	+				+0.4
1,614,913	-				+0.1
1,614,913	-				-0.3
1,614,913	-				+1.2
1,614,913	-				-0.1
1,615,181	+		IAI47_07625	0.33	+0.5
1,615,181	+		IAI47_07625	0.33	+0.8
1,615,223	+		IAI47_07625	0.38	+0.4
1,615,223	+		IAI47_07625	0.38	-1.5
1,615,223	+		IAI47_07625	0.38	-0.2
1,615,224	-		IAI47_07625	0.39	+0.6
1,615,224	-		IAI47_07625	0.39	+0.8
1,615,384	+		IAI47_07625	0.58	-0.1
1,615,384	+		IAI47_07625	0.58	-0.0
1,615,384	+		IAI47_07625	0.58	-0.1
1,615,385	-		IAI47_07625	0.58	-0.2
1,615,385	-		IAI47_07625	0.58	+2.0
1,615,385	-		IAI47_07625	0.58	-0.7
1,615,385	-		IAI47_07625	0.58	-2.4
1,615,402	+		IAI47_07625	0.60	-1.7
1,615,402	+		IAI47_07625	0.60	-0.2
1,615,413	+		IAI47_07625	0.61	+0.0
1,615,413	+		IAI47_07625	0.61	-2.7
1,615,414	-		IAI47_07625	0.61	+0.2
1,615,414	-		IAI47_07625	0.61	+0.0
1,615,643	-		IAI47_07625	0.88	+1.2
1,615,702	+				-1.4
1,615,703	-				+0.9
1,615,746	+				-0.1
1,615,746	+				-0.2
1,615,746	+				-0.2
1,615,747	-				-0.3
1,615,753	+				-0.2
1,615,755	+				+2.4
1,615,755	+				-0.1
1,615,755	+				+1.1
1,615,756	-				+0.5
1,615,827	+				+0.4
1,615,827	+				-0.6
1,615,827	+				+0.3
1,615,827	+				+0.3
1,615,827	+				+1.2
1,615,827	+				+0.8
1,615,827	+				-0.7
1,615,828	-				-0.4
1,615,828	-				+2.0
1,615,828	-				+0.1
1,615,828	-				+0.1
1,615,828	-				+0.1
1,615,828	-				+0.1
1,615,828	-				-0.8