Strain Fitness in Pantoea sp. MT58 around IAI47_07165

Experiment: Ying_AminoAcid20 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 2
1,511,096	+		IAI47_07160	0.38	+0.1
1,511,121	-		IAI47_07160	0.40	-2.5
1,511,155	-		IAI47_07160	0.43	-0.5
1,511,155	-		IAI47_07160	0.43	-0.4
1,511,155	-		IAI47_07160	0.43	-2.1
1,511,157	+		IAI47_07160	0.43	-0.3
1,511,157	+		IAI47_07160	0.43	-0.9
1,511,157	+		IAI47_07160	0.43	+0.5
1,511,158	-		IAI47_07160	0.43	-1.7
1,511,158	-		IAI47_07160	0.43	-1.3
1,511,158	-		IAI47_07160	0.43	-2.2
1,511,314	+		IAI47_07160	0.54	+0.7
1,511,314	+		IAI47_07160	0.54	+0.4
1,511,314	+		IAI47_07160	0.54	-0.2
1,511,314	+		IAI47_07160	0.54	+0.4
1,511,315	-		IAI47_07160	0.55	+0.8
1,511,419	+		IAI47_07160	0.62	-0.4
1,511,419	+		IAI47_07160	0.62	-1.2
1,511,419	+		IAI47_07160	0.62	-0.2
1,511,420	-		IAI47_07160	0.62	+1.4
1,511,549	+		IAI47_07160	0.72	+0.2
1,511,576	+		IAI47_07160	0.74	-1.2
1,511,576	+		IAI47_07160	0.74	+1.0
1,511,716	+		IAI47_07160	0.84	+1.0
1,511,732	+		IAI47_07160	0.85	-1.2
1,511,732	+		IAI47_07160	0.85	+0.0
1,511,733	-		IAI47_07160	0.85	-0.8
1,511,824	-				+0.8
1,511,834	-				+1.0
1,511,851	+				-0.1
1,511,851	+				+0.2
1,511,851	+				-1.0
1,511,851	+				+1.1
1,511,852	-				-1.6
1,511,852	-				-0.2
1,511,852	-				+0.0
1,511,878	+				+0.2
1,511,878	+				-0.3
1,511,878	+				-0.2
1,511,878	+				+0.5
1,511,923	+				+0.3
1,511,923	+				-1.3
1,511,924	-				+0.4
1,511,939	+				-1.4
1,511,939	+				-1.6
1,511,939	+				-0.3
1,511,939	+				-1.1
1,511,940	-				-0.0
1,511,940	-				-0.4
1,511,940	-				-1.0
1,511,940	-				+0.9
1,511,987	+				-1.8
1,511,988	-				-0.6
1,511,988	-				+1.4
1,512,020	-				-0.2
1,512,092	+				-0.8
1,512,278	+		IAI47_07165	0.20	-2.5
1,512,333	+		IAI47_07165	0.24	-1.8
1,512,512	+		IAI47_07165	0.36	-1.5
1,512,860	-		IAI47_07165	0.61	-0.8
1,513,061	-		IAI47_07165	0.75	-0.2
1,513,073	-		IAI47_07165	0.76	-0.2
1,513,252	+		IAI47_07165	0.88	-1.2
1,513,451	+				-1.2
1,513,452	-				-0.3
1,513,453	+				+2.4
1,513,518	+				-1.3
1,513,518	+				-0.6
1,513,518	+				-0.2
1,513,569	+				-0.3
1,513,569	+				+0.9
1,513,570	-				-1.1
1,513,570	-				+0.5
1,513,570	-				+0.0
1,513,570	-				+0.5
1,513,571	+				+0.2
1,513,571	+				+0.3
1,513,571	+				+0.7
1,513,571	+				+0.8
1,513,571	+				-0.3
1,513,571	+				-0.8
1,513,571	+				+0.1
1,513,572	-				+0.8
1,513,572	-				+0.0
1,513,572	-				-1.2
1,513,572	-				+1.3
1,513,582	+				+0.8
1,513,599	+				-0.0
1,513,599	+				-1.2
1,513,600	-				-0.5
1,513,605	+				-0.2
1,513,605	+				+0.5
1,513,606	-				+0.3
1,513,606	-				+1.1
1,513,610	+				-1.0
1,513,617	+				-0.3
1,513,638	-				+0.2
1,513,704	+				-0.9
1,513,705	-				+0.5
1,513,705	-				-0.2
1,513,705	-				+0.4
1,513,705	-				-0.0
1,513,763	+				-2.2
1,513,763	+				-1.3
1,513,764	-				-0.0
1,513,764	-				+1.1
1,513,764	-				-1.5
1,513,817	+				+2.0
1,513,818	-				+2.9
1,513,818	-				+0.2
1,513,818	-				-1.1
1,513,818	-				+0.1
1,513,903	-				-0.8
1,513,979	+				-0.7
1,513,980	-				+0.1
1,513,980	-				-0.9
1,513,980	-				-1.0
1,513,980	-				+0.3
1,513,980	-				-0.7
1,513,980	-				+0.2
1,513,983	+				-0.5
1,513,984	-				-0.0
1,513,984	-				-0.8
1,513,984	-				+0.0
1,513,984	-				-0.7
1,514,028	+				+0.5
1,514,029	-				-0.1
1,514,033	+				-1.0
1,514,034	-				+2.1
1,514,034	-				-0.2
1,514,034	-				+0.8
1,514,203	+		IAI47_07170	0.18	-0.5
1,514,203	+		IAI47_07170	0.18	-0.2
1,514,203	+		IAI47_07170	0.18	+0.9
1,514,204	-		IAI47_07170	0.18	-0.8
1,514,250	+		IAI47_07170	0.22	-0.2
1,514,251	-		IAI47_07170	0.22	+1.5
1,514,251	-		IAI47_07170	0.22	+0.8
1,514,286	+		IAI47_07170	0.25	-1.2
1,514,287	-		IAI47_07170	0.25	-0.2
1,514,298	+		IAI47_07170	0.26	-0.1
1,514,298	+		IAI47_07170	0.26	+0.0
1,514,298	+		IAI47_07170	0.26	+0.4
1,514,298	+		IAI47_07170	0.26	+0.3
1,514,298	+		IAI47_07170	0.26	+0.1
1,514,335	-		IAI47_07170	0.29	-0.7
1,514,354	+		IAI47_07170	0.31	+0.4
1,514,354	+		IAI47_07170	0.31	+1.0
1,514,354	+		IAI47_07170	0.31	+0.2
1,514,354	+		IAI47_07170	0.31	+0.1
1,514,355	-		IAI47_07170	0.31	+0.3
1,514,355	-		IAI47_07170	0.31	-0.5
1,514,355	-		IAI47_07170	0.31	+1.4
1,514,355	-		IAI47_07170	0.31	-1.1
1,514,410	+		IAI47_07170	0.36	-1.1