Strain Fitness in Pantoea sp. MT58 around IAI47_06420

Experiment: Ying_AminoAcid20 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 2
1,306,643	-		IAI47_06415	0.41	-2.0
1,306,742	+		IAI47_06415	0.47	-0.2
1,306,743	-		IAI47_06415	0.47	-1.6
1,306,807	-		IAI47_06415	0.51	-2.4
1,306,828	+				-1.2
1,306,829	-		IAI47_06415	0.53	-1.2
1,306,835	+		IAI47_06415	0.53	-1.2
1,306,901	+		IAI47_06415	0.58	-1.2
1,306,921	+		IAI47_06415	0.59	-0.8
1,306,972	+		IAI47_06415	0.62	-3.0
1,306,973	-		IAI47_06415	0.62	-0.2
1,306,974	+		IAI47_06415	0.62	-1.6
1,306,974	+		IAI47_06415	0.62	-2.9
1,306,974	+		IAI47_06415	0.62	-1.2
1,306,974	+		IAI47_06415	0.62	-1.6
1,307,014	+		IAI47_06415	0.65	-1.6
1,307,014	+		IAI47_06415	0.65	-0.8
1,307,015	-				-1.2
1,307,110	+		IAI47_06415	0.71	-1.2
1,307,110	+		IAI47_06415	0.71	-1.8
1,307,230	-		IAI47_06415	0.79	-2.8
1,307,286	+		IAI47_06415	0.83	-0.2
1,307,287	-		IAI47_06415	0.83	-1.2
1,307,354	-		IAI47_06415	0.87	+0.8
1,307,354	-		IAI47_06415	0.87	-0.8
1,307,499	+				-1.3
1,307,499	+				-1.2
1,307,514	+				+0.8
1,307,532	+				-1.2
1,307,533	-				-2.2
1,307,559	-				-0.2
1,307,582	+				-1.8
1,307,676	-				-1.6
1,307,776	+		IAI47_06420	0.15	-1.6
1,307,776	+		IAI47_06420	0.15	-0.8
1,307,777	-		IAI47_06420	0.16	-1.8
1,307,777	-		IAI47_06420	0.16	-2.0
1,307,814	+		IAI47_06420	0.18	-1.6
1,307,824	+		IAI47_06420	0.19	-0.2
1,307,864	+		IAI47_06420	0.21	-2.6
1,308,025	+		IAI47_06420	0.33	-1.8
1,308,026	-		IAI47_06420	0.33	-1.8
1,308,241	+				-0.8
1,308,241	+		IAI47_06420	0.47	-0.8
1,308,329	-		IAI47_06420	0.53	-2.0
1,308,473	-		IAI47_06420	0.63	-2.7
1,308,535	+		IAI47_06420	0.67	-0.2
1,308,547	+		IAI47_06420	0.68	-0.2
1,308,628	+		IAI47_06420	0.74	-3.0
1,308,628	+		IAI47_06420	0.74	-1.2
1,308,661	-		IAI47_06420	0.76	-1.2
1,308,818	-		IAI47_06420	0.87	+0.8
1,308,820	+		IAI47_06420	0.87	+0.8
1,308,821	-		IAI47_06420	0.87	-2.2
1,308,840	-		IAI47_06420	0.88	+0.8
1,309,006	+				+1.8
1,309,006	+				-0.8
1,309,006	+				+0.3
1,309,006	+				+0.2
1,309,006	+				+0.1
1,309,006	+				-1.0
1,309,006	+				-1.0
1,309,006	+				-0.2
1,309,006	+				-0.2
1,309,006	+				+1.4
1,309,007	-				-1.0
1,309,007	-				-0.8
1,309,007	-				+0.8
1,309,007	-				-0.6
1,309,007	-				-0.0
1,309,007	-				+0.1
1,309,014	+				-0.3
1,309,024	+				-0.1
1,309,105	+				+0.8
1,309,105	+				-0.5
1,309,105	+				-0.1
1,309,105	+				+0.4
1,309,105	+				-0.6
1,309,105	+				-1.7
1,309,105	+				+0.2
1,309,105	+				+0.1
1,309,105	+				+0.3
1,309,105	+				+0.9
1,309,105	+				-0.4
1,309,106	-				+0.6
1,309,106	-				+1.0
1,309,106	-				+0.5
1,309,106	-				-1.0
1,309,106	-				-1.2
1,309,106	-				+1.4
1,309,106	-				-0.4
1,309,106	-				-1.6
1,309,106	-				+2.0
1,309,106	-				-0.0
1,309,119	+				+0.4
1,309,119	+				-0.1
1,309,120	-				-0.9
1,309,120	-				-0.2
1,309,122	+				+1.1
1,309,122	+				-0.2
1,309,123	-				+0.7
1,309,123	-				-0.0
1,309,163	+				-0.1
1,309,163	+				+0.5
1,309,163	+				+0.5
1,309,164	-				-0.2
1,309,188	+		IAI47_06425	0.12	-1.1
1,309,188	+		IAI47_06425	0.12	-1.5
1,309,188	+		IAI47_06425	0.12	-1.2
1,309,188	+		IAI47_06425	0.12	-0.5
1,309,188	+		IAI47_06425	0.12	+0.1
1,309,189	-		IAI47_06425	0.12	+1.0
1,309,189	-		IAI47_06425	0.12	+0.6
1,309,242	+		IAI47_06425	0.24	-2.6
1,309,242	+		IAI47_06425	0.24	-0.3
1,309,243	-		IAI47_06425	0.24	+0.5
1,309,243	-		IAI47_06425	0.24	-0.9
1,309,243	-		IAI47_06425	0.24	+0.5
1,309,243	-		IAI47_06425	0.24	-0.5
1,309,243	-		IAI47_06425	0.24	+0.5
1,309,243	-		IAI47_06425	0.24	-0.3
1,309,243	-		IAI47_06425	0.24	+0.8
1,309,268	-		IAI47_06425	0.29	-0.2
1,309,321	-		IAI47_06425	0.41	-0.3
1,309,321	-		IAI47_06425	0.41	+0.2
1,309,321	-		IAI47_06425	0.41	+0.5
1,309,321	-		IAI47_06425	0.41	-0.6
1,309,471	+		IAI47_06425	0.73	+0.2
1,309,471	+		IAI47_06425	0.73	+0.0
1,309,471	+		IAI47_06425	0.73	-0.0
1,309,471	+		IAI47_06425	0.73	+0.5
1,309,471	+		IAI47_06425	0.73	+2.2
1,309,471	+		IAI47_06425	0.73	+1.0
1,309,471	+		IAI47_06425	0.73	+0.3
1,309,471	+		IAI47_06425	0.73	+0.7
1,309,471	+		IAI47_06425	0.73	-1.3
1,309,471	+		IAI47_06425	0.73	+0.3
1,309,472	-		IAI47_06425	0.74	+1.1
1,309,472	-		IAI47_06425	0.74	-1.4
1,309,472	-		IAI47_06425	0.74	+0.4
1,309,472	-		IAI47_06425	0.74	-0.7
1,309,506	+		IAI47_06425	0.81	+0.7
1,309,506	+		IAI47_06425	0.81	+0.0
1,309,506	+		IAI47_06425	0.81	-0.1
1,309,506	+		IAI47_06425	0.81	+0.2
1,309,507	-		IAI47_06425	0.81	-0.1
1,309,507	-		IAI47_06425	0.81	+0.4
1,309,507	-		IAI47_06425	0.81	+0.2
1,309,542	+		IAI47_06425	0.89	+0.3
1,309,542	+		IAI47_06425	0.89	-0.1
1,309,542	+		IAI47_06425	0.89	-0.2
1,309,543	-		IAI47_06425	0.89	+1.8
1,309,571	+				-0.2
1,309,571	+				-0.7
1,309,573	-				-1.8
1,309,590	+				+0.2
1,309,591	-				-0.8
1,309,656	+				-0.8
1,309,656	+				-0.8
1,309,656	+				+1.9
1,309,656	+				+0.0
1,309,657	-				+0.5
1,309,657	-				+0.2
1,309,657	-				-0.3
1,309,686	+				-1.2
1,309,687	-				+1.2
1,309,692	+				+0.6
1,309,692	+				-0.0
1,309,692	+				+0.1
1,309,692	+				+0.4
1,309,692	+				+0.2
1,309,818	+		IAI47_06430	0.12	-0.1
1,309,819	-		IAI47_06430	0.12	+0.5
1,309,819	-		IAI47_06430	0.12	+0.8
1,309,987	+		IAI47_06430	0.22	+0.4
1,309,994	-		IAI47_06430	0.22	-0.1