Strain Fitness in Pantoea sp. MT58 around IAI47_06415

Experiment: Ying_AminoAcid20 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 2
1,305,104	-		IAI47_06410	0.61	-2.2
1,305,167	-		IAI47_06410	0.65	-1.2
1,305,172	-		IAI47_06410	0.65	-2.8
1,305,255	+		IAI47_06410	0.70	-2.9
1,305,255	+		IAI47_06410	0.70	-3.8
1,305,256	-		IAI47_06410	0.70	-1.2
1,305,260	-		IAI47_06410	0.70	-1.6
1,305,260	-		IAI47_06410	0.70	-1.2
1,305,260	-		IAI47_06410	0.70	-2.0
1,305,369	+		IAI47_06410	0.76	-0.8
1,305,390	+		IAI47_06410	0.77	-1.6
1,305,411	-		IAI47_06410	0.78	-0.2
1,305,607	+		IAI47_06410	0.89	-1.8
1,305,608	-		IAI47_06410	0.89	-1.8
1,305,755	-				+0.8
1,305,811	+				+1.8
1,305,835	+				-1.8
1,305,836	-				-1.2
1,305,836	-				-1.2
1,305,839	+				-1.6
1,305,839	+				+0.1
1,305,839	+				+0.4
1,305,839	+				-0.2
1,305,934	-				-2.0
1,305,941	+				-1.9
1,305,941	+				-0.1
1,305,983	+				-0.2
1,305,983	+				+0.4
1,305,983	+				+0.1
1,305,983	+				-0.2
1,305,983	+				-1.6
1,305,983	+				-1.6
1,305,983	+				-2.6
1,305,983	+				-0.9
1,305,984	-				-0.2
1,305,998	+				+0.4
1,306,028	+				-0.8
1,306,028	+				-1.6
1,306,031	+				-0.8
1,306,032	-				-1.2
1,306,050	-				-0.2
1,306,295	+		IAI47_06415	0.18	-2.0
1,306,296	-				-1.6
1,306,475	-		IAI47_06415	0.30	-0.8
1,306,643	-		IAI47_06415	0.41	-2.0
1,306,742	+		IAI47_06415	0.47	-0.2
1,306,743	-		IAI47_06415	0.47	-1.6
1,306,807	-		IAI47_06415	0.51	-2.4
1,306,828	+				-1.2
1,306,829	-		IAI47_06415	0.53	-1.2
1,306,835	+		IAI47_06415	0.53	-1.2
1,306,901	+		IAI47_06415	0.58	-1.2
1,306,921	+		IAI47_06415	0.59	-0.8
1,306,972	+		IAI47_06415	0.62	-3.0
1,306,973	-		IAI47_06415	0.62	-0.2
1,306,974	+		IAI47_06415	0.62	-1.6
1,306,974	+		IAI47_06415	0.62	-2.9
1,306,974	+		IAI47_06415	0.62	-1.2
1,306,974	+		IAI47_06415	0.62	-1.6
1,307,014	+		IAI47_06415	0.65	-1.6
1,307,014	+		IAI47_06415	0.65	-0.8
1,307,015	-				-1.2
1,307,110	+		IAI47_06415	0.71	-1.2
1,307,110	+		IAI47_06415	0.71	-1.8
1,307,230	-		IAI47_06415	0.79	-2.8
1,307,286	+		IAI47_06415	0.83	-0.2
1,307,287	-		IAI47_06415	0.83	-1.2
1,307,354	-		IAI47_06415	0.87	+0.8
1,307,354	-		IAI47_06415	0.87	-0.8
1,307,499	+				-1.3
1,307,499	+				-1.2
1,307,514	+				+0.8
1,307,532	+				-1.2
1,307,533	-				-2.2
1,307,559	-				-0.2
1,307,582	+				-1.8
1,307,676	-				-1.6
1,307,776	+		IAI47_06420	0.15	-1.6
1,307,776	+		IAI47_06420	0.15	-0.8
1,307,777	-		IAI47_06420	0.16	-1.8
1,307,777	-		IAI47_06420	0.16	-2.0
1,307,814	+		IAI47_06420	0.18	-1.6
1,307,824	+		IAI47_06420	0.19	-0.2
1,307,864	+		IAI47_06420	0.21	-2.6
1,308,025	+		IAI47_06420	0.33	-1.8
1,308,026	-		IAI47_06420	0.33	-1.8
1,308,241	+				-0.8
1,308,241	+		IAI47_06420	0.47	-0.8
1,308,329	-		IAI47_06420	0.53	-2.0
1,308,473	-		IAI47_06420	0.63	-2.7
1,308,535	+		IAI47_06420	0.67	-0.2