Strain Fitness in Pantoea sp. MT58 around IAI47_05520

Experiment: Ying_AminoAcid20 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 2
1,161,585	+		IAI47_05515	0.19	+0.5
1,161,598	-		IAI47_05515	0.21	-1.2
1,161,598	-		IAI47_05515	0.21	-1.8
1,161,600	+		IAI47_05515	0.21	+0.4
1,161,600	+		IAI47_05515	0.21	+2.4
1,161,600	+		IAI47_05515	0.21	+0.2
1,161,600	+		IAI47_05515	0.21	+0.1
1,161,600	+		IAI47_05515	0.21	+0.8
1,161,601	-		IAI47_05515	0.21	-0.8
1,161,601	-		IAI47_05515	0.21	+0.8
1,161,601	-		IAI47_05515	0.21	-1.0
1,161,601	-		IAI47_05515	0.21	+0.4
1,161,601	-		IAI47_05515	0.21	-1.3
1,161,601	-		IAI47_05515	0.21	+1.4
1,161,601	-		IAI47_05515	0.21	-4.1
1,161,601	-		IAI47_05515	0.21	+0.4
1,161,609	+		IAI47_05515	0.22	-2.5
1,161,684	+		IAI47_05515	0.31	-0.2
1,161,684	+		IAI47_05515	0.31	-0.2
1,161,684	+		IAI47_05515	0.31	-2.2
1,161,684	+		IAI47_05515	0.31	+0.2
1,161,684	+		IAI47_05515	0.31	-0.1
1,161,684	+		IAI47_05515	0.31	-0.1
1,161,685	-		IAI47_05515	0.32	-0.2
1,161,685	-		IAI47_05515	0.32	+0.8
1,161,685	-		IAI47_05515	0.32	-1.2
1,161,690	+		IAI47_05515	0.32	-0.1
1,161,691	-		IAI47_05515	0.32	-0.0
1,161,732	+		IAI47_05515	0.38	-0.0
1,161,733	-		IAI47_05515	0.38	-1.9
1,161,733	-		IAI47_05515	0.38	-1.4
1,161,733	-		IAI47_05515	0.38	-0.6
1,161,750	+		IAI47_05515	0.40	-1.1
1,161,751	-		IAI47_05515	0.40	-1.4
1,161,812	+		IAI47_05515	0.48	+0.5
1,161,812	+		IAI47_05515	0.48	+0.8
1,161,813	-		IAI47_05515	0.48	-1.8
1,161,813	-		IAI47_05515	0.48	+0.2
1,161,837	+		IAI47_05515	0.51	-0.6
1,161,837	+		IAI47_05515	0.51	-1.5
1,161,838	-		IAI47_05515	0.51	-0.4
1,161,838	-		IAI47_05515	0.51	-2.0
1,161,838	-		IAI47_05515	0.51	-1.4
1,161,838	-		IAI47_05515	0.51	-0.5
1,161,911	-		IAI47_05515	0.60	-0.2
1,161,918	+		IAI47_05515	0.61	-0.7
1,161,918	+		IAI47_05515	0.61	+0.0
1,161,918	+		IAI47_05515	0.61	+0.3
1,161,918	+		IAI47_05515	0.61	+0.1
1,161,918	+		IAI47_05515	0.61	+0.8
1,161,919	-		IAI47_05515	0.61	-1.4
1,161,919	-		IAI47_05515	0.61	-0.8
1,161,963	+		IAI47_05515	0.67	-1.8
1,161,963	+		IAI47_05515	0.67	-0.6
1,161,963	+		IAI47_05515	0.67	+0.8
1,161,964	-		IAI47_05515	0.67	-0.2
1,161,964	-		IAI47_05515	0.67	-0.8
1,162,002	+		IAI47_05515	0.72	-0.1
1,162,002	+		IAI47_05515	0.72	+1.1
1,162,002	+		IAI47_05515	0.72	-0.6
1,162,002	+		IAI47_05515	0.72	+0.4
1,162,002	+		IAI47_05515	0.72	+0.3
1,162,002	+		IAI47_05515	0.72	+0.2
1,162,002	+		IAI47_05515	0.72	-0.2
1,162,002	+		IAI47_05515	0.72	-0.2
1,162,002	+		IAI47_05515	0.72	+0.8
1,162,002	+		IAI47_05515	0.72	+1.6
1,162,002	+		IAI47_05515	0.72	+0.5
1,162,003	-		IAI47_05515	0.72	-2.7
1,162,003	-		IAI47_05515	0.72	+0.2
1,162,003	-		IAI47_05515	0.72	-0.2
1,162,003	-		IAI47_05515	0.72	+0.0
1,162,003	-		IAI47_05515	0.72	-0.7
1,162,008	+		IAI47_05515	0.72	-0.0
1,162,008	+		IAI47_05515	0.72	+0.0
1,162,008	+		IAI47_05515	0.72	+0.2
1,162,009	-		IAI47_05515	0.73	-0.8
1,162,009	-		IAI47_05515	0.73	+0.8
1,162,009	-		IAI47_05515	0.73	-1.1
1,162,009	-		IAI47_05515	0.73	-0.2
1,162,009	-		IAI47_05515	0.73	-1.5
1,162,012	+		IAI47_05515	0.73	+0.5
1,162,012	+		IAI47_05515	0.73	-0.5
1,162,012	+		IAI47_05515	0.73	-0.5
1,162,012	+		IAI47_05515	0.73	+1.6
1,162,012	+		IAI47_05515	0.73	-2.5
1,162,012	+		IAI47_05515	0.73	-0.8
1,162,013	-		IAI47_05515	0.73	-1.4
1,162,013	-		IAI47_05515	0.73	+1.1
1,162,013	-		IAI47_05515	0.73	-1.5
1,162,013	-		IAI47_05515	0.73	+0.8
1,162,013	-		IAI47_05515	0.73	-0.4
1,162,013	-		IAI47_05515	0.73	-1.0
1,162,013	-		IAI47_05515	0.73	+0.0
1,162,033	+		IAI47_05515	0.76	-0.3
1,162,033	+		IAI47_05515	0.76	-0.8
1,162,034	-		IAI47_05515	0.76	+0.9
1,162,034	-		IAI47_05515	0.76	-1.2
1,162,074	+		IAI47_05515	0.81	+1.8
1,162,074	+		IAI47_05515	0.81	+0.0
1,162,074	+		IAI47_05515	0.81	+1.2
1,162,075	-		IAI47_05515	0.81	-2.5
1,162,090	+		IAI47_05515	0.83	-2.2
1,162,091	-		IAI47_05515	0.83	-0.8
1,162,110	+		IAI47_05515	0.85	-0.0
1,162,111	-		IAI47_05515	0.86	-0.3
1,162,125	+		IAI47_05515	0.87	+0.2
1,162,126	-		IAI47_05515	0.87	-0.7
1,162,126	-		IAI47_05515	0.87	-1.1
1,162,168	-				-0.8
1,162,206	+				-0.8
1,162,207	-				+0.1
1,162,207	-				-0.2
1,162,212	+				+1.6
1,162,212	+				+0.3
1,162,212	+				+0.1
1,162,212	+				-0.8
1,162,212	+				-0.6
1,162,212	+				-0.5
1,162,212	+				+0.6
1,162,212	+				+0.8
1,162,212	+				-2.0
1,162,213	-				+0.3
1,162,213	-				+0.6
1,162,213	-				+1.0
1,162,213	-				+2.8
1,162,213	-				+0.5
1,162,224	+				+0.8
1,162,224	+				+0.4
1,162,224	+				-0.0
1,162,224	+				-0.5
1,162,224	+				+0.4
1,162,224	+				-0.3
1,162,224	+				+0.8
1,162,224	+				+1.6
1,162,224	+				+0.8
1,162,224	+				+2.0
1,162,224	+				+0.0
1,162,224	+				+0.0
1,162,224	+				+0.2
1,162,225	-				-0.2
1,162,225	-				-0.4
1,162,225	-				+0.6
1,162,225	-				-1.0
1,162,225	-				+0.8
1,162,225	-				-1.8
1,162,225	-				-0.7
1,162,225	-				+0.2
1,162,225	-				-2.0
1,162,225	-				+1.8
1,162,225	-				+0.1
1,162,225	-				-0.8
1,162,225	-				+0.2
1,162,225	-				+0.5
1,162,225	-				+0.3
1,162,225	-				+0.0
1,162,227	+				+0.9
1,162,227	+				-0.2
1,162,227	+				+2.2
1,162,227	+				-0.2
1,162,227	+				-1.4
1,162,228	-				-0.8
1,162,228	-				-0.1
1,162,228	-				+1.4
1,162,228	-				-0.1
1,162,228	-				-0.2
1,162,228	-				-1.2
1,162,228	-				-0.6
1,162,228	-				+0.8
1,162,235	+				-1.9
1,162,250	+				-0.2
1,162,250	+				+0.7
1,162,250	+				+0.4
1,162,251	-				+1.4
1,162,310	+				-0.2
1,162,366	-				+0.4
1,162,366	-				-0.3
1,162,370	+				+0.0
1,162,370	+				-0.4
1,162,370	+				+1.1
1,162,370	+				+0.3
1,162,370	+				-0.1
1,162,371	-				-0.1
1,162,371	-				-0.1
1,162,371	-				-0.3
1,162,371	-				-0.0
1,162,375	-				-0.8
1,162,403	+				+0.5
1,162,404	-				-0.7
1,162,404	-				+0.8
1,162,404	-				-0.2
1,162,405	+				-0.2
1,162,405	+				+0.0
1,162,405	+				-0.4
1,162,413	-				+0.2
1,162,422	+				+0.0
1,162,446	+				-0.4
1,162,447	-				+0.1
1,162,447	-				+0.4
1,162,544	+				-0.2
1,162,545	-				-2.3
1,162,547	+				+0.1
1,162,548	-				-1.8
1,162,590	+				+1.4
1,162,590	+				-1.4
1,162,592	+				+0.5
1,162,592	+				-1.7
1,162,592	+				-1.2
1,162,592	+				+0.4
1,162,592	+				+0.5
1,162,592	+				-0.8
1,162,650	+		IAI47_05520	0.86	-0.2
1,162,650	+		IAI47_05520	0.86	-2.5
1,162,712	+				-0.2
1,162,712	+				+0.2
1,162,712	+				+0.3
1,162,712	+				+0.2
1,162,712	+				+0.7
1,162,712	+				+1.3
1,162,770	+		IAI47_05525	0.86	-0.2
1,162,770	+		IAI47_05525	0.86	+0.2
1,162,770	+		IAI47_05525	0.86	+1.3
1,162,827	+				-0.5
1,162,827	+				+0.4
1,162,854	+				+0.4
1,162,854	+				-0.5
1,162,854	+				-0.3
1,162,855	-				+0.8
1,162,860	+				+0.8
1,162,860	+				+0.2
1,162,861	-				+0.0
1,162,861	-				+0.1
1,162,899	+				-0.1
1,162,899	+				+0.3
1,162,899	+				+0.5
1,162,899	+				+0.0
1,162,899	+				-0.8
1,162,899	+				+0.2
1,162,899	+				-0.8
1,162,899	+				+0.1
1,162,899	+				+1.0
1,162,899	+				-1.7
1,162,899	+				-0.4
1,162,900	-				-0.5
1,162,900	-				+0.8
1,162,900	-				+0.8
1,162,900	-				+0.3
1,162,900	-				-0.7
1,162,900	-				+0.4
1,162,903	+				-1.2
1,162,903	+				+0.4
1,162,903	+				-1.2
1,162,904	-				-0.9
1,162,904	-				-0.1
1,162,904	-				-0.4
1,162,965	-				-0.9
1,162,983	+				+0.6
1,162,983	+				-2.5
1,162,983	+				+0.8
1,162,983	+				+0.1
1,162,983	+				-0.1
1,162,983	+				-0.8
1,162,983	+				+0.8
1,162,983	+				-1.8
1,162,984	-				+0.1
1,162,984	-				-0.5
1,162,984	-				-0.3
1,162,984	-				+0.2
1,162,984	-				-0.2
1,162,984	-				-0.2
1,162,984	-				+0.8
1,162,984	-				+0.7
1,162,988	+				+0.0
1,162,988	+				+0.0
1,162,988	+				-0.7
1,162,988	+				-1.4
1,162,988	+				+0.5
1,162,988	+				-1.5
1,162,988	+				-0.4
1,162,988	+				-0.0
1,162,988	+				-1.2
1,162,988	+				-0.1
1,162,988	+				+0.8
1,162,989	-				-0.2
1,162,989	-				-1.2
1,162,989	-				-0.4
1,162,989	-				-0.5
1,162,989	-				-0.7
1,162,989	-				-2.9
1,162,989	-				-0.9
1,162,989	-				+0.4
1,162,989	-				+0.6
1,162,989	-				-0.7
1,162,989	-				+0.4
1,162,990	+				+0.2
1,162,990	+				-0.7
1,162,991	-				-0.1
1,162,991	-				+1.6
1,163,015	+				-0.3
1,163,015	+				+0.5
1,163,015	+				-1.8
1,163,016	-				+1.3
1,163,016	-				-1.0
1,163,016	-				+0.2
1,163,148	+				-1.4
1,163,148	+				+0.4
1,163,148	+				-2.0
1,163,156	+				-0.9
1,163,156	+				+0.8
1,163,156	+				+1.2
1,163,157	-				+2.4
1,163,214	+		IAI47_05530	0.10	-1.2
1,163,214	+		IAI47_05530	0.10	+1.8
1,163,214	+		IAI47_05530	0.10	-1.5
1,163,214	+		IAI47_05530	0.10	-0.2
1,163,214	+		IAI47_05530	0.10	+0.2
1,163,215	-		IAI47_05530	0.10	-2.0
1,163,280	+		IAI47_05530	0.16	-0.6
1,163,280	+		IAI47_05530	0.16	+0.5
1,163,280	+		IAI47_05530	0.16	-1.0
1,163,280	+		IAI47_05530	0.16	-0.6
1,163,281	-		IAI47_05530	0.16	+1.1
1,163,281	-		IAI47_05530	0.16	-0.2
1,163,367	+		IAI47_05530	0.23	+0.1
1,163,368	-		IAI47_05530	0.23	-0.2
1,163,368	-		IAI47_05530	0.23	+0.8
1,163,370	+		IAI47_05530	0.23	-0.2
1,163,370	+		IAI47_05530	0.23	+0.2
1,163,371	-		IAI47_05530	0.23	+0.8
1,163,371	-		IAI47_05530	0.23	-1.5
1,163,433	+		IAI47_05530	0.28	+1.0
1,163,433	+		IAI47_05530	0.28	-0.5
1,163,433	+		IAI47_05530	0.28	-0.3
1,163,433	+		IAI47_05530	0.28	-0.2
1,163,433	+		IAI47_05530	0.28	-0.7
1,163,433	+		IAI47_05530	0.28	+0.5
1,163,433	+		IAI47_05530	0.28	+0.8
1,163,434	-		IAI47_05530	0.28	+0.8
1,163,434	-		IAI47_05530	0.28	-0.3
1,163,434	-		IAI47_05530	0.28	-1.0
1,163,434	-		IAI47_05530	0.28	+0.4
1,163,435	+		IAI47_05530	0.29	+0.5
1,163,435	+		IAI47_05530	0.29	-0.3
1,163,435	+		IAI47_05530	0.29	-0.4
1,163,435	+		IAI47_05530	0.29	-1.3
1,163,435	+		IAI47_05530	0.29	-0.4
1,163,435	+		IAI47_05530	0.29	-1.2
1,163,435	+		IAI47_05530	0.29	+0.1
1,163,435	+		IAI47_05530	0.29	+0.8
1,163,435	+		IAI47_05530	0.29	-0.5
1,163,436	-		IAI47_05530	0.29	-0.7
1,163,436	-		IAI47_05530	0.29	-0.4
1,163,436	-		IAI47_05530	0.29	-1.0
1,163,508	+		IAI47_05530	0.35	-0.4
1,163,509	-		IAI47_05530	0.35	-1.8
1,163,535	+		IAI47_05530	0.37	+1.8
1,163,535	+		IAI47_05530	0.37	+0.8
1,163,547	+		IAI47_05530	0.38	+1.1
1,163,548	-		IAI47_05530	0.38	-0.5
1,163,562	+		IAI47_05530	0.39	+1.1
1,163,562	+		IAI47_05530	0.39	+0.4
1,163,562	+		IAI47_05530	0.39	-1.0
1,163,562	+		IAI47_05530	0.39	-0.2
1,163,563	-		IAI47_05530	0.39	+0.2
1,163,563	-		IAI47_05530	0.39	-0.2
1,163,563	-		IAI47_05530	0.39	-1.2
1,163,563	-		IAI47_05530	0.39	+0.2
1,163,563	-		IAI47_05530	0.39	+1.5
1,163,564	+		IAI47_05530	0.39	+0.3
1,163,564	+		IAI47_05530	0.39	+0.3
1,163,564	+		IAI47_05530	0.39	+1.8
1,163,564	+		IAI47_05530	0.39	-1.2
1,163,564	+		IAI47_05530	0.39	-0.8
1,163,564	+		IAI47_05530	0.39	-0.1
1,163,564	+		IAI47_05530	0.39	+0.8
1,163,564	+		IAI47_05530	0.39	-0.1
1,163,564	+		IAI47_05530	0.39	-0.8
1,163,565	-		IAI47_05530	0.39	-0.2
1,163,565	-		IAI47_05530	0.39	+0.0
1,163,565	-		IAI47_05530	0.39	+0.8
1,163,565	-		IAI47_05530	0.39	-0.0
1,163,565	-		IAI47_05530	0.39	-2.2
1,163,598	+		IAI47_05530	0.42	+0.8
1,163,599	-		IAI47_05530	0.42	+1.8