Strain Fitness in Pantoea sp. MT58 around IAI47_04940

Experiment: Ying_AminoAcid20 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 2
1,036,780	-		IAI47_04935	0.30	+0.8
1,036,783	-		IAI47_04935	0.30	+1.0
1,036,783	-		IAI47_04935	0.30	+0.3
1,036,832	+		IAI47_04935	0.34	+1.2
1,036,832	+		IAI47_04935	0.34	-0.2
1,036,832	+		IAI47_04935	0.34	-0.2
1,036,832	+		IAI47_04935	0.34	-2.5
1,036,833	-		IAI47_04935	0.34	+0.1
1,036,833	-		IAI47_04935	0.34	+0.7
1,036,896	+		IAI47_04935	0.38	-0.6
1,036,896	+		IAI47_04935	0.38	-0.2
1,036,896	+		IAI47_04935	0.38	-0.2
1,036,897	-		IAI47_04935	0.38	+0.0
1,036,897	-		IAI47_04935	0.38	+0.8
1,037,001	+		IAI47_04935	0.46	+0.6
1,037,033	+		IAI47_04935	0.48	+0.6
1,037,034	-		IAI47_04935	0.48	-0.6
1,037,223	+		IAI47_04935	0.61	-0.0
1,037,223	+		IAI47_04935	0.61	+0.1
1,037,278	+		IAI47_04935	0.65	-0.2
1,037,278	+		IAI47_04935	0.65	+0.6
1,037,401	-		IAI47_04935	0.74	+1.8
1,037,457	+		IAI47_04935	0.78	+1.5
1,037,458	-		IAI47_04935	0.78	-0.4
1,037,482	+		IAI47_04935	0.79	-0.2
1,037,482	+		IAI47_04935	0.79	+0.0
1,037,482	+		IAI47_04935	0.79	+0.8
1,037,482	+		IAI47_04935	0.79	-0.8
1,037,483	-		IAI47_04935	0.79	+2.0
1,037,483	-		IAI47_04935	0.79	-0.5
1,037,640	-				-0.5
1,037,664	+				+0.8
1,037,664	+				+1.0
1,037,664	+				-1.6
1,037,665	-				-3.3
1,037,665	-				+1.0
1,037,785	+				+0.8
1,037,785	+				-1.3
1,037,786	-				+1.0
1,037,786	-				+0.3
1,037,786	-				+1.8
1,037,786	-				+0.2
1,037,790	-				-0.0
1,037,804	+				-0.2
1,037,804	+				+1.8
1,037,804	+				-0.3
1,037,804	+				+0.8
1,037,805	-				+0.8
1,037,805	-				-0.2
1,037,838	+				+0.5
1,037,838	+				+0.2
1,037,838	+				-1.5
1,037,838	+				-0.2
1,037,838	+				-0.5
1,037,838	+				+0.4
1,037,839	-				+1.5
1,037,839	-				+0.3
1,037,839	-				-0.5
1,037,839	-				+1.2
1,037,839	-				-0.4
1,037,839	-				+1.1
1,037,839	-				+0.2
1,037,839	-				+0.0
1,037,839	-				+0.4
1,037,839	-				+0.1
1,037,840	-				+2.0
1,037,912	-		IAI47_04940	0.20	+1.7
1,037,912	-		IAI47_04940	0.20	-0.5
1,037,912	-		IAI47_04940	0.20	+0.2
1,037,946	-		IAI47_04940	0.25	-0.3
1,037,946	-		IAI47_04940	0.25	+0.0
1,037,968	-		IAI47_04940	0.28	-1.1
1,037,968	-		IAI47_04940	0.28	-1.0
1,037,977	+		IAI47_04940	0.30	-0.2
1,037,978	-		IAI47_04940	0.30	+0.2
1,038,075	+		IAI47_04940	0.44	-0.3
1,038,075	+		IAI47_04940	0.44	+1.2
1,038,076	-		IAI47_04940	0.44	-0.6
1,038,096	+		IAI47_04940	0.47	-0.3
1,038,096	+		IAI47_04940	0.47	-0.3
1,038,096	+		IAI47_04940	0.47	+0.0
1,038,096	+		IAI47_04940	0.47	-0.5
1,038,097	-		IAI47_04940	0.48	-1.1
1,038,097	-		IAI47_04940	0.48	-0.2
1,038,097	-		IAI47_04940	0.48	+0.2
1,038,097	-		IAI47_04940	0.48	-0.0
1,038,130	+		IAI47_04940	0.52	-0.5
1,038,130	+		IAI47_04940	0.52	-1.0
1,038,130	+		IAI47_04940	0.52	+0.8
1,038,131	-		IAI47_04940	0.53	+0.9
1,038,131	-		IAI47_04940	0.53	-0.8
1,038,131	-		IAI47_04940	0.53	-0.2
1,038,131	-		IAI47_04940	0.53	-0.4
1,038,131	-		IAI47_04940	0.53	+0.9
1,038,131	-		IAI47_04940	0.53	-0.0
1,038,247	+		IAI47_04940	0.70	+0.8
1,038,247	+		IAI47_04940	0.70	-0.6
1,038,247	+		IAI47_04940	0.70	-0.6
1,038,248	-		IAI47_04940	0.70	+0.5
1,038,248	-		IAI47_04940	0.70	-2.2
1,038,274	-		IAI47_04940	0.74	+1.0
1,038,274	-		IAI47_04940	0.74	-1.2
1,038,306	+		IAI47_04940	0.79	+1.8
1,038,307	-		IAI47_04940	0.79	-0.9
1,038,339	+		IAI47_04940	0.84	+0.4
1,038,339	+		IAI47_04940	0.84	+0.4
1,038,339	+		IAI47_04940	0.84	+1.2
1,038,339	+		IAI47_04940	0.84	+0.0
1,038,339	+		IAI47_04940	0.84	-0.4
1,038,340	-		IAI47_04940	0.84	-0.8
1,038,340	-		IAI47_04940	0.84	+0.3
1,038,340	-		IAI47_04940	0.84	-1.1
1,038,340	-		IAI47_04940	0.84	-0.6
1,038,340	-		IAI47_04940	0.84	-0.9
1,038,340	-		IAI47_04940	0.84	-1.1
1,038,384	+				+1.2
1,038,385	-				-0.2
1,038,417	+				-0.8
1,038,417	+				-0.5
1,038,417	+				-0.8
1,038,607	+		IAI47_04945	0.12	-0.9
1,038,608	-		IAI47_04945	0.12	+0.8
1,038,608	-		IAI47_04945	0.12	-0.8
1,038,608	-		IAI47_04945	0.12	+0.2
1,038,608	-		IAI47_04945	0.12	+0.0
1,038,690	-		IAI47_04945	0.18	-1.2
1,038,745	+		IAI47_04945	0.22	+1.7
1,038,745	+		IAI47_04945	0.22	-0.3
1,038,745	+		IAI47_04945	0.22	-0.7
1,038,746	-		IAI47_04945	0.23	-0.6
1,038,746	-		IAI47_04945	0.23	+0.1
1,038,877	+		IAI47_04945	0.32	-2.7
1,038,877	+		IAI47_04945	0.32	-0.5
1,038,878	-		IAI47_04945	0.32	+0.7
1,038,878	-		IAI47_04945	0.32	+0.6
1,038,878	-		IAI47_04945	0.32	+0.4
1,038,878	-		IAI47_04945	0.32	+1.2
1,038,899	+		IAI47_04945	0.34	+0.4
1,038,899	+		IAI47_04945	0.34	+0.8
1,038,899	+		IAI47_04945	0.34	-0.1
1,038,899	+		IAI47_04945	0.34	-2.4
1,038,899	+		IAI47_04945	0.34	-1.1
1,038,900	-		IAI47_04945	0.34	+0.1
1,038,900	-		IAI47_04945	0.34	-0.2
1,038,900	-		IAI47_04945	0.34	+1.1
1,038,925	+		IAI47_04945	0.36	-0.7
1,038,926	-		IAI47_04945	0.36	+2.4
1,038,933	-		IAI47_04945	0.37	+0.5
1,038,933	-		IAI47_04945	0.37	+0.7
1,038,933	-		IAI47_04945	0.37	+0.2
1,038,933	-		IAI47_04945	0.37	+0.3
1,039,020	-		IAI47_04945	0.43	+1.0
1,039,020	-		IAI47_04945	0.43	+0.4
1,039,020	-		IAI47_04945	0.43	-1.2
1,039,020	-		IAI47_04945	0.43	+0.8
1,039,020	-		IAI47_04945	0.43	+1.0
1,039,085	+		IAI47_04945	0.48	+0.0
1,039,086	-		IAI47_04945	0.48	-1.8
1,039,114	+		IAI47_04945	0.50	-0.1
1,039,114	+		IAI47_04945	0.50	+1.9
1,039,164	-		IAI47_04945	0.54	-0.3
1,039,184	+		IAI47_04945	0.55	-0.0
1,039,184	+		IAI47_04945	0.55	+0.9
1,039,184	+		IAI47_04945	0.55	-0.1
1,039,185	-		IAI47_04945	0.55	-0.4
1,039,185	-		IAI47_04945	0.55	+0.7
1,039,211	+		IAI47_04945	0.57	-1.4
1,039,211	+		IAI47_04945	0.57	-1.4
1,039,211	+		IAI47_04945	0.57	-0.5
1,039,212	-		IAI47_04945	0.57	+1.4
1,039,212	-		IAI47_04945	0.57	-0.9
1,039,241	+		IAI47_04945	0.60	+0.5
1,039,329	+		IAI47_04945	0.66	-0.0
1,039,329	+		IAI47_04945	0.66	+0.5
1,039,329	+		IAI47_04945	0.66	+1.2
1,039,329	+		IAI47_04945	0.66	-1.7
1,039,329	+		IAI47_04945	0.66	+0.4
1,039,329	+		IAI47_04945	0.66	+1.4
1,039,329	+		IAI47_04945	0.66	+0.0
1,039,330	-		IAI47_04945	0.66	+2.4
1,039,330	-		IAI47_04945	0.66	-0.7
1,039,385	+		IAI47_04945	0.70	+0.3
1,039,385	+		IAI47_04945	0.70	+0.8
1,039,433	+		IAI47_04945	0.74	+1.6
1,039,433	+		IAI47_04945	0.74	+1.2
1,039,433	+		IAI47_04945	0.74	+1.9
1,039,433	+		IAI47_04945	0.74	+0.5
1,039,434	-		IAI47_04945	0.74	-0.3
1,039,434	-		IAI47_04945	0.74	-0.2
1,039,434	-		IAI47_04945	0.74	-0.0