Experiment: Ying_AminoAcid20 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_04290 and IAI47_04295 are separated by 105 nucleotides IAI47_04295 and IAI47_04300 are separated by 95 nucleotides IAI47_04300 and IAI47_04305 are separated by 124 nucleotides IAI47_04305 and IAI47_04310 are separated by 133 nucleotides
IAI47_04290: IAI47_04290 - trans-aconitate 2-methyltransferase, at 904,170 to 904,946
_04290
IAI47_04295: IAI47_04295 - nicotinamide-nucleotide amidase, at 905,052 to 905,546
_04295
IAI47_04300: IAI47_04300 - recombinase RecA, at 905,642 to 906,712
_04300
IAI47_04305: IAI47_04305 - regulatory protein RecX, at 906,837 to 907,355
_04305
IAI47_04310: IAI47_04310 - alanine--tRNA ligase, at 907,489 to 910,116
_04310
Position (kb) 905
906
907 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 904.655 kb on + strand, within IAI47_04290 at 904.655 kb on + strand, within IAI47_04290 at 904.655 kb on + strand, within IAI47_04290 at 904.655 kb on + strand, within IAI47_04290 at 904.655 kb on + strand, within IAI47_04290 at 904.656 kb on - strand, within IAI47_04290 at 904.656 kb on - strand, within IAI47_04290 at 904.656 kb on - strand, within IAI47_04290 at 904.680 kb on + strand, within IAI47_04290 at 904.683 kb on + strand, within IAI47_04290 at 904.683 kb on + strand, within IAI47_04290 at 904.683 kb on + strand, within IAI47_04290 at 904.684 kb on - strand, within IAI47_04290 at 904.684 kb on - strand, within IAI47_04290 at 904.684 kb on - strand, within IAI47_04290 at 904.718 kb on + strand, within IAI47_04290 at 904.718 kb on + strand, within IAI47_04290 at 904.719 kb on - strand, within IAI47_04290 at 904.728 kb on - strand, within IAI47_04290 at 904.734 kb on + strand, within IAI47_04290 at 904.734 kb on + strand, within IAI47_04290 at 904.734 kb on + strand, within IAI47_04290 at 904.734 kb on + strand, within IAI47_04290 at 904.734 kb on + strand, within IAI47_04290 at 904.734 kb on + strand, within IAI47_04290 at 904.734 kb on + strand, within IAI47_04290 at 904.734 kb on + strand, within IAI47_04290 at 904.734 kb on + strand, within IAI47_04290 at 904.735 kb on - strand, within IAI47_04290 at 904.735 kb on - strand, within IAI47_04290 at 904.735 kb on - strand, within IAI47_04290 at 904.735 kb on - strand, within IAI47_04290 at 904.735 kb on - strand, within IAI47_04290 at 904.737 kb on + strand, within IAI47_04290 at 904.737 kb on + strand, within IAI47_04290 at 904.737 kb on + strand, within IAI47_04290 at 904.737 kb on + strand, within IAI47_04290 at 904.737 kb on + strand, within IAI47_04290 at 904.737 kb on + strand, within IAI47_04290 at 904.738 kb on - strand, within IAI47_04290 at 904.738 kb on - strand, within IAI47_04290 at 904.744 kb on + strand, within IAI47_04290 at 904.744 kb on + strand, within IAI47_04290 at 904.744 kb on + strand, within IAI47_04290 at 904.745 kb on - strand, within IAI47_04290 at 904.745 kb on - strand, within IAI47_04290 at 904.767 kb on - strand, within IAI47_04290 at 904.792 kb on + strand, within IAI47_04290 at 904.792 kb on + strand, within IAI47_04290 at 904.793 kb on - strand, within IAI47_04290 at 904.793 kb on - strand, within IAI47_04290 at 904.848 kb on + strand, within IAI47_04290 at 904.849 kb on - strand, within IAI47_04290 at 904.866 kb on - strand, within IAI47_04290 at 904.944 kb on + strand at 904.944 kb on + strand at 904.944 kb on + strand at 904.945 kb on - strand at 904.945 kb on - strand at 904.945 kb on - strand at 904.945 kb on - strand at 904.945 kb on - strand at 904.945 kb on - strand at 904.948 kb on + strand at 904.948 kb on + strand at 904.948 kb on + strand at 904.948 kb on + strand at 904.948 kb on + strand at 904.948 kb on + strand at 904.948 kb on + strand at 904.948 kb on + strand at 904.948 kb on + strand at 904.948 kb on + strand at 904.948 kb on + strand at 904.949 kb on - strand at 904.949 kb on - strand at 904.949 kb on - strand at 904.949 kb on - strand at 904.949 kb on - strand at 904.949 kb on - strand at 904.949 kb on - strand at 904.949 kb on - strand at 905.051 kb on - strand at 905.051 kb on - strand at 905.051 kb on - strand at 905.078 kb on + strand at 905.078 kb on + strand at 905.079 kb on - strand at 905.089 kb on + strand at 905.089 kb on + strand at 905.089 kb on + strand at 905.089 kb on + strand at 905.089 kb on + strand at 905.089 kb on + strand at 905.089 kb on + strand at 905.089 kb on + strand at 905.090 kb on - strand at 905.090 kb on - strand at 905.090 kb on - strand at 905.123 kb on - strand, within IAI47_04295 at 905.160 kb on - strand, within IAI47_04295 at 905.160 kb on - strand, within IAI47_04295 at 905.174 kb on + strand, within IAI47_04295 at 905.175 kb on - strand, within IAI47_04295 at 905.175 kb on - strand, within IAI47_04295 at 905.175 kb on - strand, within IAI47_04295 at 905.217 kb on + strand, within IAI47_04295 at 905.217 kb on + strand, within IAI47_04295 at 905.218 kb on - strand, within IAI47_04295 at 905.218 kb on - strand, within IAI47_04295 at 905.218 kb on - strand, within IAI47_04295 at 905.218 kb on - strand, within IAI47_04295 at 905.218 kb on - strand, within IAI47_04295 at 905.275 kb on - strand, within IAI47_04295 at 905.275 kb on - strand, within IAI47_04295 at 905.343 kb on + strand, within IAI47_04295 at 905.344 kb on - strand, within IAI47_04295 at 905.406 kb on - strand, within IAI47_04295 at 905.465 kb on + strand, within IAI47_04295 at 905.465 kb on + strand, within IAI47_04295 at 905.466 kb on - strand, within IAI47_04295 at 905.512 kb on + strand at 905.512 kb on + strand at 905.512 kb on + strand at 905.512 kb on + strand at 905.513 kb on - strand at 905.513 kb on - strand at 905.513 kb on - strand at 905.513 kb on - strand at 905.523 kb on + strand at 905.523 kb on + strand at 905.523 kb on + strand at 905.553 kb on + strand at 905.566 kb on + strand at 905.566 kb on + strand at 905.595 kb on + strand at 905.595 kb on + strand at 905.595 kb on + strand at 905.618 kb on + strand at 905.631 kb on + strand at 905.631 kb on + strand at 905.631 kb on + strand at 905.632 kb on - strand at 905.674 kb on - strand at 905.768 kb on - strand, within IAI47_04300 at 905.825 kb on - strand, within IAI47_04300 at 905.837 kb on + strand, within IAI47_04300 at 905.837 kb on + strand, within IAI47_04300 at 905.921 kb on - strand, within IAI47_04300 at 905.970 kb on + strand, within IAI47_04300 at 906.097 kb on + strand, within IAI47_04300 at 906.151 kb on + strand, within IAI47_04300 at 906.151 kb on + strand, within IAI47_04300 at 906.151 kb on + strand, within IAI47_04300 at 906.152 kb on - strand, within IAI47_04300 at 906.152 kb on - strand, within IAI47_04300 at 906.152 kb on - strand, within IAI47_04300 at 906.152 kb on - strand, within IAI47_04300 at 906.152 kb on - strand, within IAI47_04300 at 906.199 kb on + strand, within IAI47_04300 at 906.199 kb on + strand, within IAI47_04300 at 906.200 kb on - strand, within IAI47_04300 at 906.232 kb on + strand, within IAI47_04300 at 906.233 kb on - strand, within IAI47_04300 at 906.233 kb on - strand, within IAI47_04300 at 906.296 kb on + strand, within IAI47_04300 at 906.297 kb on - strand, within IAI47_04300 at 906.349 kb on + strand, within IAI47_04300 at 906.434 kb on + strand, within IAI47_04300 at 906.434 kb on + strand, within IAI47_04300 at 906.434 kb on + strand, within IAI47_04300 at 906.434 kb on + strand, within IAI47_04300 at 906.434 kb on + strand, within IAI47_04300 at 906.434 kb on + strand, within IAI47_04300 at 906.435 kb on - strand, within IAI47_04300 at 906.435 kb on - strand, within IAI47_04300 at 906.435 kb on - strand, within IAI47_04300 at 906.435 kb on - strand, within IAI47_04300 at 906.435 kb on - strand, within IAI47_04300 at 906.435 kb on - strand, within IAI47_04300 at 906.445 kb on + strand, within IAI47_04300 at 906.446 kb on - strand, within IAI47_04300 at 906.451 kb on + strand, within IAI47_04300 at 906.451 kb on + strand, within IAI47_04300 at 906.451 kb on + strand, within IAI47_04300 at 906.515 kb on + strand, within IAI47_04300 at 906.521 kb on + strand, within IAI47_04300 at 906.521 kb on + strand, within IAI47_04300 at 906.521 kb on + strand, within IAI47_04300 at 906.521 kb on + strand, within IAI47_04300 at 906.521 kb on + strand, within IAI47_04300 at 906.522 kb on - strand, within IAI47_04300 at 906.522 kb on - strand, within IAI47_04300 at 906.522 kb on - strand, within IAI47_04300 at 906.522 kb on - strand, within IAI47_04300 at 906.701 kb on + strand at 906.710 kb on + strand at 906.710 kb on + strand at 906.711 kb on - strand at 906.711 kb on - strand at 906.711 kb on - strand at 906.766 kb on + strand at 906.766 kb on + strand at 906.767 kb on - strand at 906.767 kb on - strand at 906.767 kb on - strand at 906.804 kb on + strand at 906.805 kb on - strand at 906.805 kb on - strand at 906.805 kb on - strand at 906.805 kb on - strand at 906.805 kb on - strand at 906.822 kb on + strand at 906.822 kb on + strand at 906.823 kb on - strand at 906.836 kb on + strand at 906.837 kb on - strand at 906.837 kb on - strand at 906.837 kb on - strand at 906.837 kb on - strand at 906.876 kb on + strand at 906.877 kb on - strand at 906.877 kb on - strand at 906.905 kb on + strand, within IAI47_04305 at 906.905 kb on + strand, within IAI47_04305 at 906.905 kb on + strand, within IAI47_04305 at 906.906 kb on - strand, within IAI47_04305 at 906.906 kb on - strand, within IAI47_04305 at 906.906 kb on - strand, within IAI47_04305 at 906.906 kb on - strand, within IAI47_04305 at 906.906 kb on - strand, within IAI47_04305 at 906.906 kb on - strand, within IAI47_04305 at 906.940 kb on + strand, within IAI47_04305 at 906.948 kb on - strand, within IAI47_04305 at 906.948 kb on - strand, within IAI47_04305 at 906.948 kb on - strand, within IAI47_04305 at 906.948 kb on - strand, within IAI47_04305 at 907.030 kb on + strand, within IAI47_04305 at 907.030 kb on + strand, within IAI47_04305 at 907.030 kb on + strand, within IAI47_04305 at 907.031 kb on - strand, within IAI47_04305 at 907.031 kb on - strand, within IAI47_04305 at 907.077 kb on - strand, within IAI47_04305 at 907.088 kb on + strand, within IAI47_04305 at 907.089 kb on - strand, within IAI47_04305 at 907.283 kb on - strand, within IAI47_04305 at 907.283 kb on - strand, within IAI47_04305 at 907.283 kb on - strand, within IAI47_04305 at 907.285 kb on + strand, within IAI47_04305 at 907.285 kb on + strand, within IAI47_04305 at 907.286 kb on - strand, within IAI47_04305 at 907.286 kb on - strand, within IAI47_04305 at 907.286 kb on - strand, within IAI47_04305 at 907.286 kb on - strand, within IAI47_04305 at 907.290 kb on + strand, within IAI47_04305 at 907.290 kb on + strand, within IAI47_04305 at 907.291 kb on - strand, within IAI47_04305 at 907.291 kb on - strand, within IAI47_04305 at 907.291 kb on - strand, within IAI47_04305 at 907.291 kb on - strand, within IAI47_04305 at 907.291 kb on - strand, within IAI47_04305 at 907.291 kb on - strand, within IAI47_04305 at 907.311 kb on - strand at 907.322 kb on + strand at 907.353 kb on + strand at 907.353 kb on + strand at 907.353 kb on + strand at 907.354 kb on - strand at 907.354 kb on - strand at 907.397 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 2 remove 904,655 + IAI47_04290 0.62 -0.6 904,655 + IAI47_04290 0.62 +0.5 904,655 + IAI47_04290 0.62 -1.1 904,655 + IAI47_04290 0.62 +0.0 904,655 + IAI47_04290 0.62 +0.9 904,656 - IAI47_04290 0.63 -0.9 904,656 - IAI47_04290 0.63 +0.4 904,656 - IAI47_04290 0.63 +0.6 904,680 + IAI47_04290 0.66 +0.2 904,683 + IAI47_04290 0.66 -0.9 904,683 + IAI47_04290 0.66 +0.5 904,683 + IAI47_04290 0.66 -1.5 904,684 - IAI47_04290 0.66 -0.3 904,684 - IAI47_04290 0.66 -1.4 904,684 - IAI47_04290 0.66 +0.7 904,718 + IAI47_04290 0.71 -0.1 904,718 + IAI47_04290 0.71 +0.8 904,719 - IAI47_04290 0.71 -1.4 904,728 - IAI47_04290 0.72 +0.5 904,734 + IAI47_04290 0.73 -0.2 904,734 + IAI47_04290 0.73 +2.1 904,734 + IAI47_04290 0.73 -0.4 904,734 + IAI47_04290 0.73 +0.3 904,734 + IAI47_04290 0.73 +0.1 904,734 + IAI47_04290 0.73 -0.2 904,734 + IAI47_04290 0.73 +0.5 904,734 + IAI47_04290 0.73 +0.6 904,734 + IAI47_04290 0.73 +0.8 904,735 - IAI47_04290 0.73 +0.6 904,735 - IAI47_04290 0.73 -0.0 904,735 - IAI47_04290 0.73 +0.5 904,735 - IAI47_04290 0.73 -1.0 904,735 - IAI47_04290 0.73 +1.6 904,737 + IAI47_04290 0.73 -0.1 904,737 + IAI47_04290 0.73 +2.1 904,737 + IAI47_04290 0.73 +1.7 904,737 + IAI47_04290 0.73 -0.9 904,737 + IAI47_04290 0.73 -0.8 904,737 + IAI47_04290 0.73 +1.3 904,738 - IAI47_04290 0.73 +1.8 904,738 - IAI47_04290 0.73 +0.6 904,744 + IAI47_04290 0.74 +0.7 904,744 + IAI47_04290 0.74 +0.3 904,744 + IAI47_04290 0.74 -0.1 904,745 - IAI47_04290 0.74 -0.0 904,745 - IAI47_04290 0.74 -0.5 904,767 - IAI47_04290 0.77 +1.6 904,792 + IAI47_04290 0.80 -0.9 904,792 + IAI47_04290 0.80 +1.1 904,793 - IAI47_04290 0.80 -0.1 904,793 - IAI47_04290 0.80 -0.0 904,848 + IAI47_04290 0.87 +0.5 904,849 - IAI47_04290 0.87 -0.2 904,866 - IAI47_04290 0.90 +1.3 904,944 + -1.0 904,944 + -0.5 904,944 + +1.2 904,945 - +0.8 904,945 - +1.2 904,945 - -0.0 904,945 - -0.5 904,945 - -0.8 904,945 - -0.9 904,948 + +3.3 904,948 + -0.2 904,948 + +1.2 904,948 + -0.2 904,948 + -2.2 904,948 + -0.5 904,948 + +0.8 904,948 + +1.5 904,948 + -0.1 904,948 + +0.6 904,948 + +0.5 904,949 - +0.8 904,949 - +1.0 904,949 - -0.3 904,949 - +0.2 904,949 - +0.2 904,949 - -1.1 904,949 - -1.2 904,949 - +2.0 905,051 - +0.1 905,051 - +0.0 905,051 - +0.1 905,078 + -0.5 905,078 + -0.5 905,079 - +1.2 905,089 + -0.4 905,089 + -0.3 905,089 + -1.1 905,089 + -0.8 905,089 + -0.9 905,089 + -1.3 905,089 + -0.9 905,089 + +0.4 905,090 - -1.1 905,090 - -0.7 905,090 - +0.7 905,123 - IAI47_04295 0.14 +1.4 905,160 - IAI47_04295 0.22 +0.8 905,160 - IAI47_04295 0.22 -0.2 905,174 + IAI47_04295 0.25 +0.8 905,175 - IAI47_04295 0.25 +0.1 905,175 - IAI47_04295 0.25 -1.5 905,175 - IAI47_04295 0.25 +1.2 905,217 + IAI47_04295 0.33 -0.8 905,217 + IAI47_04295 0.33 -2.2 905,218 - IAI47_04295 0.34 -0.8 905,218 - IAI47_04295 0.34 -0.2 905,218 - IAI47_04295 0.34 -0.4 905,218 - IAI47_04295 0.34 -1.8 905,218 - IAI47_04295 0.34 +1.4 905,275 - IAI47_04295 0.45 +0.1 905,275 - IAI47_04295 0.45 -0.3 905,343 + IAI47_04295 0.59 +0.1 905,344 - IAI47_04295 0.59 -0.4 905,406 - IAI47_04295 0.72 -1.2 905,465 + IAI47_04295 0.83 -1.0 905,465 + IAI47_04295 0.83 +1.8 905,466 - IAI47_04295 0.84 -0.4 905,512 + -1.8 905,512 + -0.2 905,512 + +0.0 905,512 + -1.4 905,513 - -0.4 905,513 - -0.5 905,513 - -0.8 905,513 - -0.4 905,523 + -0.6 905,523 + -0.2 905,523 + +0.0 905,553 + -0.5 905,566 + +0.5 905,566 + +0.0 905,595 + +0.1 905,595 + -0.4 905,595 + +0.2 905,618 + +0.0 905,631 + -1.5 905,631 + -0.2 905,631 + -1.2 905,632 - -2.0 905,674 - -0.8 905,768 - IAI47_04300 0.12 -1.9 905,825 - IAI47_04300 0.17 -0.2 905,837 + IAI47_04300 0.18 +0.1 905,837 + IAI47_04300 0.18 -1.8 905,921 - IAI47_04300 0.26 +0.6 905,970 + IAI47_04300 0.31 -0.2 906,097 + IAI47_04300 0.42 -2.3 906,151 + IAI47_04300 0.48 -0.2 906,151 + IAI47_04300 0.48 +0.8 906,151 + IAI47_04300 0.48 -1.2 906,152 - IAI47_04300 0.48 -0.2 906,152 - IAI47_04300 0.48 -0.9 906,152 - IAI47_04300 0.48 -0.8 906,152 - IAI47_04300 0.48 -1.5 906,152 - IAI47_04300 0.48 +0.0 906,199 + IAI47_04300 0.52 -1.2 906,199 + IAI47_04300 0.52 -0.8 906,200 - IAI47_04300 0.52 -0.8 906,232 + IAI47_04300 0.55 +0.8 906,233 - IAI47_04300 0.55 -1.2 906,233 - IAI47_04300 0.55 -0.2 906,296 + IAI47_04300 0.61 +1.8 906,297 - IAI47_04300 0.61 -0.8 906,349 + IAI47_04300 0.66 +1.0 906,434 + IAI47_04300 0.74 -1.1 906,434 + IAI47_04300 0.74 -0.8 906,434 + IAI47_04300 0.74 -0.2 906,434 + IAI47_04300 0.74 -2.9 906,434 + IAI47_04300 0.74 -0.1 906,434 + IAI47_04300 0.74 -0.2 906,435 - IAI47_04300 0.74 -0.2 906,435 - IAI47_04300 0.74 -0.8 906,435 - IAI47_04300 0.74 -1.1 906,435 - IAI47_04300 0.74 -1.1 906,435 - IAI47_04300 0.74 -1.0 906,435 - IAI47_04300 0.74 -0.8 906,445 + IAI47_04300 0.75 -0.8 906,446 - IAI47_04300 0.75 +1.4 906,451 + IAI47_04300 0.76 -1.0 906,451 + IAI47_04300 0.76 -0.2 906,451 + IAI47_04300 0.76 +1.4 906,515 + IAI47_04300 0.82 -2.0 906,521 + IAI47_04300 0.82 +1.7 906,521 + IAI47_04300 0.82 -1.8 906,521 + IAI47_04300 0.82 +0.8 906,521 + IAI47_04300 0.82 -1.2 906,521 + IAI47_04300 0.82 -1.2 906,522 - IAI47_04300 0.82 -0.8 906,522 - IAI47_04300 0.82 -1.8 906,522 - IAI47_04300 0.82 +0.5 906,522 - IAI47_04300 0.82 -0.9 906,701 + +0.8 906,710 + +0.8 906,710 + +0.6 906,711 - -1.3 906,711 - +0.8 906,711 - -0.8 906,766 + +0.1 906,766 + +0.2 906,767 - -0.0 906,767 - +0.4 906,767 - -0.2 906,804 + -0.4 906,805 - -1.2 906,805 - +0.1 906,805 - -0.4 906,805 - +2.0 906,805 - -0.6 906,822 + +0.4 906,822 + -0.0 906,823 - -0.3 906,836 + +0.1 906,837 - +0.8 906,837 - -0.1 906,837 - -0.6 906,837 - -0.4 906,876 + -0.7 906,877 - -0.6 906,877 - +0.6 906,905 + IAI47_04305 0.13 +0.4 906,905 + IAI47_04305 0.13 +0.2 906,905 + IAI47_04305 0.13 -1.0 906,906 - IAI47_04305 0.13 -0.6 906,906 - IAI47_04305 0.13 -0.4 906,906 - IAI47_04305 0.13 -0.2 906,906 - IAI47_04305 0.13 +0.5 906,906 - IAI47_04305 0.13 -0.9 906,906 - IAI47_04305 0.13 -0.8 906,940 + IAI47_04305 0.20 -0.1 906,948 - IAI47_04305 0.21 +0.5 906,948 - IAI47_04305 0.21 -0.2 906,948 - IAI47_04305 0.21 +2.6 906,948 - IAI47_04305 0.21 +0.6 907,030 + IAI47_04305 0.37 -0.4 907,030 + IAI47_04305 0.37 +0.4 907,030 + IAI47_04305 0.37 -0.1 907,031 - IAI47_04305 0.37 +0.8 907,031 - IAI47_04305 0.37 +1.3 907,077 - IAI47_04305 0.46 +0.4 907,088 + IAI47_04305 0.48 +1.2 907,089 - IAI47_04305 0.49 +0.3 907,283 - IAI47_04305 0.86 +0.2 907,283 - IAI47_04305 0.86 +0.5 907,283 - IAI47_04305 0.86 +0.2 907,285 + IAI47_04305 0.86 -0.4 907,285 + IAI47_04305 0.86 -1.9 907,286 - IAI47_04305 0.87 +0.0 907,286 - IAI47_04305 0.87 -0.0 907,286 - IAI47_04305 0.87 -0.4 907,286 - IAI47_04305 0.87 +0.0 907,290 + IAI47_04305 0.87 +0.1 907,290 + IAI47_04305 0.87 +0.1 907,291 - IAI47_04305 0.87 +0.1 907,291 - IAI47_04305 0.87 +0.1 907,291 - IAI47_04305 0.87 +0.0 907,291 - IAI47_04305 0.87 +0.7 907,291 - IAI47_04305 0.87 -1.1 907,291 - IAI47_04305 0.87 +0.8 907,311 - -0.9 907,322 + -0.0 907,353 + -0.6 907,353 + -1.1 907,353 + +0.8 907,354 - +0.2 907,354 - -0.5 907,397 + -0.4
Or see this region's nucleotide sequence