Experiment: Ying_AminoAcid20 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_03800 and IAI47_03805 are separated by 226 nucleotides IAI47_03805 and IAI47_03810 overlap by 26 nucleotides IAI47_03810 and IAI47_03815 are separated by 79 nucleotides
IAI47_03800: IAI47_03800 - tRNA-modifying protein YgfZ, at 793,518 to 794,504
_03800
IAI47_03805: IAI47_03805 - FAD assembly factor SdhE, at 794,731 to 794,997
_03805
IAI47_03810: IAI47_03810 - hypothetical protein, at 794,972 to 795,382
_03810
IAI47_03815: IAI47_03815 - flavodoxin FldB, at 795,462 to 795,980
_03815
Position (kb) 794
795 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 794.511 kb on - strand at 794.511 kb on - strand at 794.511 kb on - strand at 794.511 kb on - strand at 794.511 kb on - strand at 794.517 kb on + strand at 794.517 kb on + strand at 794.517 kb on + strand at 794.517 kb on + strand at 794.517 kb on + strand at 794.517 kb on + strand at 794.520 kb on + strand at 794.520 kb on + strand at 794.521 kb on - strand at 794.521 kb on - strand at 794.521 kb on - strand at 794.521 kb on - strand at 794.521 kb on - strand at 794.521 kb on - strand at 794.553 kb on + strand at 794.553 kb on + strand at 794.553 kb on + strand at 794.554 kb on - strand at 794.554 kb on - strand at 794.611 kb on + strand at 794.612 kb on - strand at 794.625 kb on + strand at 794.682 kb on + strand at 794.692 kb on + strand at 794.692 kb on + strand at 794.692 kb on + strand at 794.693 kb on - strand at 794.693 kb on - strand at 794.693 kb on - strand at 794.693 kb on - strand at 794.693 kb on - strand at 794.737 kb on - strand at 794.740 kb on - strand at 794.740 kb on - strand at 794.745 kb on + strand at 794.746 kb on - strand at 794.746 kb on - strand at 794.754 kb on + strand at 794.755 kb on - strand at 794.755 kb on - strand at 794.755 kb on - strand at 794.755 kb on - strand at 794.799 kb on + strand, within IAI47_03805 at 794.799 kb on + strand, within IAI47_03805 at 794.799 kb on + strand, within IAI47_03805 at 794.800 kb on - strand, within IAI47_03805 at 794.800 kb on - strand, within IAI47_03805 at 794.800 kb on - strand, within IAI47_03805 at 794.800 kb on - strand, within IAI47_03805 at 794.800 kb on - strand, within IAI47_03805 at 794.800 kb on - strand, within IAI47_03805 at 794.802 kb on + strand, within IAI47_03805 at 794.803 kb on - strand, within IAI47_03805 at 794.803 kb on - strand, within IAI47_03805 at 794.825 kb on + strand, within IAI47_03805 at 794.825 kb on - strand, within IAI47_03805 at 794.835 kb on + strand, within IAI47_03805 at 794.835 kb on + strand, within IAI47_03805 at 794.835 kb on + strand, within IAI47_03805 at 794.836 kb on - strand, within IAI47_03805 at 794.847 kb on + strand, within IAI47_03805 at 794.847 kb on + strand, within IAI47_03805 at 794.847 kb on + strand, within IAI47_03805 at 794.847 kb on + strand, within IAI47_03805 at 794.848 kb on - strand, within IAI47_03805 at 794.848 kb on - strand, within IAI47_03805 at 794.895 kb on + strand, within IAI47_03805 at 794.896 kb on - strand, within IAI47_03805 at 794.938 kb on - strand, within IAI47_03805 at 794.938 kb on - strand, within IAI47_03805 at 794.938 kb on - strand, within IAI47_03805 at 794.968 kb on - strand, within IAI47_03805 at 794.968 kb on - strand, within IAI47_03805 at 794.995 kb on + strand at 794.995 kb on + strand at 794.995 kb on + strand at 794.995 kb on + strand at 794.995 kb on + strand at 794.995 kb on + strand at 794.995 kb on + strand at 794.995 kb on + strand at 794.996 kb on - strand at 794.996 kb on - strand at 794.996 kb on - strand at 794.996 kb on - strand at 794.996 kb on - strand at 794.996 kb on - strand at 794.996 kb on - strand at 794.996 kb on - strand at 795.100 kb on + strand, within IAI47_03810 at 795.101 kb on - strand, within IAI47_03810 at 795.177 kb on + strand, within IAI47_03810 at 795.178 kb on - strand, within IAI47_03810 at 795.178 kb on - strand, within IAI47_03810 at 795.322 kb on + strand, within IAI47_03810 at 795.322 kb on + strand, within IAI47_03810 at 795.322 kb on + strand, within IAI47_03810 at 795.322 kb on + strand, within IAI47_03810 at 795.322 kb on + strand, within IAI47_03810 at 795.323 kb on - strand, within IAI47_03810 at 795.323 kb on - strand, within IAI47_03810 at 795.323 kb on - strand, within IAI47_03810 at 795.323 kb on - strand, within IAI47_03810 at 795.323 kb on - strand, within IAI47_03810 at 795.323 kb on - strand, within IAI47_03810 at 795.323 kb on - strand, within IAI47_03810 at 795.348 kb on + strand at 795.348 kb on + strand at 795.349 kb on - strand at 795.380 kb on + strand at 795.381 kb on - strand at 795.399 kb on + strand at 795.399 kb on + strand at 795.399 kb on + strand at 795.399 kb on + strand at 795.399 kb on + strand at 795.399 kb on + strand at 795.399 kb on + strand at 795.399 kb on + strand at 795.400 kb on - strand at 795.400 kb on - strand at 795.400 kb on - strand at 795.400 kb on - strand at 795.400 kb on - strand at 795.402 kb on + strand at 795.402 kb on + strand at 795.402 kb on + strand at 795.402 kb on + strand at 795.402 kb on + strand at 795.402 kb on + strand at 795.402 kb on + strand at 795.403 kb on - strand at 795.403 kb on - strand at 795.403 kb on - strand at 795.433 kb on + strand at 795.433 kb on + strand at 795.434 kb on - strand at 795.434 kb on - strand at 795.489 kb on + strand at 795.490 kb on - strand at 795.490 kb on - strand at 795.490 kb on - strand at 795.490 kb on - strand at 795.490 kb on - strand at 795.610 kb on + strand, within IAI47_03815 at 795.610 kb on + strand, within IAI47_03815 at 795.610 kb on + strand, within IAI47_03815 at 795.611 kb on - strand, within IAI47_03815 at 795.611 kb on - strand, within IAI47_03815 at 795.611 kb on - strand, within IAI47_03815 at 795.611 kb on - strand, within IAI47_03815 at 795.611 kb on - strand, within IAI47_03815 at 795.629 kb on - strand, within IAI47_03815 at 795.687 kb on + strand, within IAI47_03815 at 795.687 kb on + strand, within IAI47_03815 at 795.703 kb on + strand, within IAI47_03815 at 795.704 kb on - strand, within IAI47_03815 at 795.727 kb on + strand, within IAI47_03815 at 795.728 kb on - strand, within IAI47_03815 at 795.728 kb on - strand, within IAI47_03815 at 795.728 kb on - strand, within IAI47_03815 at 795.844 kb on + strand, within IAI47_03815 at 795.844 kb on + strand, within IAI47_03815 at 795.844 kb on + strand, within IAI47_03815 at 795.844 kb on + strand, within IAI47_03815 at 795.882 kb on - strand, within IAI47_03815 at 795.882 kb on - strand, within IAI47_03815 at 795.882 kb on - strand, within IAI47_03815 at 795.895 kb on - strand, within IAI47_03815 at 795.944 kb on - strand at 795.944 kb on - strand at 795.950 kb on + strand at 795.950 kb on + strand at 795.951 kb on - strand at 795.987 kb on - strand at 795.997 kb on - strand at 795.997 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 2 remove 794,511 - +0.1 794,511 - +1.1 794,511 - -1.2 794,511 - -0.2 794,511 - -0.2 794,517 + +0.8 794,517 + -1.8 794,517 + -0.2 794,517 + +1.3 794,517 + -0.2 794,517 + +1.8 794,520 + +1.1 794,520 + -0.5 794,521 - +0.3 794,521 - -1.5 794,521 - -0.2 794,521 - -0.1 794,521 - +0.4 794,521 - -1.0 794,553 + -0.0 794,553 + +0.7 794,553 + -1.1 794,554 - +1.9 794,554 - -0.7 794,611 + +0.8 794,612 - +0.2 794,625 + +1.8 794,682 + -1.2 794,692 + -1.8 794,692 + -0.2 794,692 + -0.1 794,693 - +1.4 794,693 - +0.1 794,693 - -0.5 794,693 - -0.2 794,693 - +0.8 794,737 - -1.5 794,740 - +0.1 794,740 - -1.8 794,745 + -0.0 794,746 - -0.2 794,746 - -1.2 794,754 + +0.8 794,755 - +0.4 794,755 - -2.2 794,755 - -1.2 794,755 - +0.1 794,799 + IAI47_03805 0.25 -2.2 794,799 + IAI47_03805 0.25 +1.4 794,799 + IAI47_03805 0.25 -0.5 794,800 - IAI47_03805 0.26 -1.2 794,800 - IAI47_03805 0.26 -1.5 794,800 - IAI47_03805 0.26 +0.8 794,800 - IAI47_03805 0.26 -0.8 794,800 - IAI47_03805 0.26 +0.1 794,800 - IAI47_03805 0.26 -0.2 794,802 + IAI47_03805 0.27 +0.8 794,803 - IAI47_03805 0.27 -0.0 794,803 - IAI47_03805 0.27 -1.5 794,825 + IAI47_03805 0.35 -1.8 794,825 - IAI47_03805 0.35 -0.2 794,835 + IAI47_03805 0.39 -0.8 794,835 + IAI47_03805 0.39 -0.8 794,835 + IAI47_03805 0.39 -1.7 794,836 - IAI47_03805 0.39 +0.8 794,847 + IAI47_03805 0.43 -0.9 794,847 + IAI47_03805 0.43 -2.0 794,847 + IAI47_03805 0.43 -1.2 794,847 + IAI47_03805 0.43 -2.4 794,848 - IAI47_03805 0.44 -0.2 794,848 - IAI47_03805 0.44 -0.8 794,895 + IAI47_03805 0.61 -0.2 794,896 - IAI47_03805 0.62 -0.2 794,938 - IAI47_03805 0.78 -2.1 794,938 - IAI47_03805 0.78 -1.2 794,938 - IAI47_03805 0.78 -0.2 794,968 - IAI47_03805 0.89 -0.2 794,968 - IAI47_03805 0.89 -0.5 794,995 + -0.3 794,995 + +0.0 794,995 + -0.1 794,995 + +0.6 794,995 + +1.7 794,995 + -0.1 794,995 + +0.3 794,995 + +1.8 794,996 - +0.1 794,996 - -0.1 794,996 - +0.1 794,996 - +0.1 794,996 - +0.1 794,996 - +0.8 794,996 - +1.5 794,996 - -0.1 795,100 + IAI47_03810 0.31 -0.3 795,101 - IAI47_03810 0.31 -0.6 795,177 + IAI47_03810 0.50 -3.1 795,178 - IAI47_03810 0.50 +2.0 795,178 - IAI47_03810 0.50 +0.2 795,322 + IAI47_03810 0.85 +1.4 795,322 + IAI47_03810 0.85 +1.0 795,322 + IAI47_03810 0.85 +1.4 795,322 + IAI47_03810 0.85 -1.0 795,322 + IAI47_03810 0.85 +0.3 795,323 - IAI47_03810 0.85 -0.2 795,323 - IAI47_03810 0.85 -0.2 795,323 - IAI47_03810 0.85 -0.6 795,323 - IAI47_03810 0.85 +0.8 795,323 - IAI47_03810 0.85 -1.0 795,323 - IAI47_03810 0.85 +0.3 795,323 - IAI47_03810 0.85 +1.3 795,348 + -0.6 795,348 + +0.1 795,349 - -0.3 795,380 + +0.8 795,381 - -1.4 795,399 + +0.5 795,399 + +0.3 795,399 + +1.0 795,399 + +0.2 795,399 + -2.1 795,399 + -0.4 795,399 + +0.2 795,399 + -1.1 795,400 - +1.0 795,400 - +0.8 795,400 - -0.3 795,400 - +0.0 795,400 - -0.8 795,402 + +0.2 795,402 + -0.1 795,402 + -0.9 795,402 + +2.7 795,402 + +1.1 795,402 + -0.2 795,402 + +1.5 795,403 - +1.1 795,403 - -0.8 795,403 - -1.9 795,433 + +0.4 795,433 + -0.2 795,434 - +0.8 795,434 - -1.8 795,489 + -0.5 795,490 - -0.9 795,490 - -0.9 795,490 - -0.4 795,490 - -1.6 795,490 - +1.0 795,610 + IAI47_03815 0.29 -0.6 795,610 + IAI47_03815 0.29 +1.5 795,610 + IAI47_03815 0.29 +0.1 795,611 - IAI47_03815 0.29 -0.5 795,611 - IAI47_03815 0.29 -0.5 795,611 - IAI47_03815 0.29 +0.5 795,611 - IAI47_03815 0.29 +0.5 795,611 - IAI47_03815 0.29 -1.7 795,629 - IAI47_03815 0.32 +0.1 795,687 + IAI47_03815 0.43 -0.8 795,687 + IAI47_03815 0.43 +0.4 795,703 + IAI47_03815 0.46 -1.2 795,704 - IAI47_03815 0.47 -1.0 795,727 + IAI47_03815 0.51 +0.3 795,728 - IAI47_03815 0.51 -0.1 795,728 - IAI47_03815 0.51 -0.1 795,728 - IAI47_03815 0.51 +0.8 795,844 + IAI47_03815 0.74 -0.5 795,844 + IAI47_03815 0.74 +0.5 795,844 + IAI47_03815 0.74 +0.6 795,844 + IAI47_03815 0.74 +1.2 795,882 - IAI47_03815 0.81 -0.1 795,882 - IAI47_03815 0.81 +0.5 795,882 - IAI47_03815 0.81 -0.2 795,895 - IAI47_03815 0.83 +0.8 795,944 - +0.6 795,944 - -0.5 795,950 + +3.1 795,950 + +0.8 795,951 - -1.5 795,987 - +1.4 795,997 - -0.9 795,997 - -1.4
Or see this region's nucleotide sequence