Strain Fitness in Pantoea sp. MT58 around IAI47_02770

Experiment: Ying_AminoAcid20 rep B; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_02765 and IAI47_02770 are separated by 62 nucleotidesIAI47_02770 and IAI47_02775 are separated by 294 nucleotidesIAI47_02775 and IAI47_02780 are separated by 13 nucleotides IAI47_02765: IAI47_02765 - metalloprotease PmbA, at 573,624 to 574,976 _02765 IAI47_02770: IAI47_02770 - cytochrome b562, at 575,039 to 575,425 _02770 IAI47_02775: IAI47_02775 - glycine dehydrogenase, at 575,720 to 576,055 _02775 IAI47_02780: IAI47_02780 - hypothetical protein, at 576,069 to 576,425 _02780 Position (kb) 575 576Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 574.085 kb on + strand, within IAI47_02765at 574.085 kb on + strand, within IAI47_02765at 574.086 kb on - strand, within IAI47_02765at 574.086 kb on - strand, within IAI47_02765at 574.086 kb on - strand, within IAI47_02765at 574.088 kb on + strand, within IAI47_02765at 574.088 kb on + strand, within IAI47_02765at 574.088 kb on + strand, within IAI47_02765at 574.088 kb on + strand, within IAI47_02765at 574.088 kb on + strand, within IAI47_02765at 574.089 kb on - strand, within IAI47_02765at 574.089 kb on - strand, within IAI47_02765at 574.089 kb on - strand, within IAI47_02765at 574.089 kb on - strand, within IAI47_02765at 574.116 kb on - strand, within IAI47_02765at 574.116 kb on - strand, within IAI47_02765at 574.154 kb on + strand, within IAI47_02765at 574.154 kb on + strand, within IAI47_02765at 574.154 kb on + strand, within IAI47_02765at 574.154 kb on + strand, within IAI47_02765at 574.154 kb on + strand, within IAI47_02765at 574.154 kb on + strand, within IAI47_02765at 574.154 kb on + strand, within IAI47_02765at 574.155 kb on - strand, within IAI47_02765at 574.155 kb on - strand, within IAI47_02765at 574.155 kb on - strand, within IAI47_02765at 574.155 kb on - strand, within IAI47_02765at 574.155 kb on - strand, within IAI47_02765at 574.155 kb on - strand, within IAI47_02765at 574.167 kb on + strand, within IAI47_02765at 574.167 kb on + strand, within IAI47_02765at 574.168 kb on - strand, within IAI47_02765at 574.223 kb on + strand, within IAI47_02765at 574.237 kb on - strand, within IAI47_02765at 574.242 kb on + strand, within IAI47_02765at 574.242 kb on + strand, within IAI47_02765at 574.242 kb on + strand, within IAI47_02765at 574.243 kb on - strand, within IAI47_02765at 574.243 kb on - strand, within IAI47_02765at 574.243 kb on - strand, within IAI47_02765at 574.243 kb on - strand, within IAI47_02765at 574.243 kb on - strand, within IAI47_02765at 574.243 kb on - strand, within IAI47_02765at 574.244 kb on + strand, within IAI47_02765at 574.244 kb on + strand, within IAI47_02765at 574.244 kb on + strand, within IAI47_02765at 574.244 kb on + strand, within IAI47_02765at 574.245 kb on - strand, within IAI47_02765at 574.245 kb on - strand, within IAI47_02765at 574.245 kb on - strand, within IAI47_02765at 574.245 kb on - strand, within IAI47_02765at 574.245 kb on - strand, within IAI47_02765at 574.310 kb on + strand, within IAI47_02765at 574.432 kb on - strand, within IAI47_02765at 574.432 kb on - strand, within IAI47_02765at 574.436 kb on + strand, within IAI47_02765at 574.437 kb on - strand, within IAI47_02765at 574.437 kb on - strand, within IAI47_02765at 574.493 kb on + strand, within IAI47_02765at 574.493 kb on + strand, within IAI47_02765at 574.494 kb on - strand, within IAI47_02765at 574.494 kb on - strand, within IAI47_02765at 574.494 kb on - strand, within IAI47_02765at 574.494 kb on - strand, within IAI47_02765at 574.496 kb on + strand, within IAI47_02765at 574.496 kb on + strand, within IAI47_02765at 574.496 kb on + strand, within IAI47_02765at 574.497 kb on - strand, within IAI47_02765at 574.617 kb on + strand, within IAI47_02765at 574.617 kb on + strand, within IAI47_02765at 574.617 kb on + strand, within IAI47_02765at 574.618 kb on - strand, within IAI47_02765at 574.618 kb on - strand, within IAI47_02765at 574.618 kb on - strand, within IAI47_02765at 574.618 kb on - strand, within IAI47_02765at 574.629 kb on - strand, within IAI47_02765at 574.671 kb on - strand, within IAI47_02765at 574.671 kb on - strand, within IAI47_02765at 574.671 kb on - strand, within IAI47_02765at 574.735 kb on + strand, within IAI47_02765at 574.735 kb on + strand, within IAI47_02765at 574.775 kb on + strand, within IAI47_02765at 574.785 kb on + strand, within IAI47_02765at 574.785 kb on + strand, within IAI47_02765at 574.785 kb on + strand, within IAI47_02765at 574.786 kb on - strand, within IAI47_02765at 574.786 kb on - strand, within IAI47_02765at 574.786 kb on - strand, within IAI47_02765at 574.826 kb on + strand, within IAI47_02765at 574.854 kb on - strandat 574.854 kb on - strandat 574.854 kb on - strandat 574.908 kb on - strandat 574.922 kb on + strandat 574.922 kb on + strandat 574.922 kb on + strandat 574.926 kb on - strandat 574.926 kb on - strandat 574.945 kb on + strandat 574.945 kb on + strandat 574.945 kb on + strandat 574.946 kb on - strandat 574.946 kb on - strandat 574.964 kb on - strandat 574.974 kb on + strandat 574.974 kb on + strandat 574.974 kb on + strandat 574.974 kb on + strandat 574.975 kb on - strandat 574.975 kb on - strandat 574.975 kb on - strandat 574.975 kb on - strandat 575.034 kb on + strandat 575.035 kb on - strandat 575.044 kb on + strandat 575.044 kb on + strandat 575.044 kb on + strandat 575.044 kb on + strandat 575.044 kb on + strandat 575.044 kb on + strandat 575.044 kb on + strandat 575.045 kb on - strandat 575.045 kb on - strandat 575.045 kb on - strandat 575.045 kb on - strandat 575.045 kb on - strandat 575.045 kb on - strandat 575.045 kb on - strandat 575.045 kb on - strandat 575.045 kb on - strandat 575.045 kb on - strandat 575.045 kb on - strandat 575.045 kb on - strandat 575.099 kb on + strand, within IAI47_02770at 575.100 kb on - strand, within IAI47_02770at 575.122 kb on + strand, within IAI47_02770at 575.122 kb on + strand, within IAI47_02770at 575.243 kb on - strand, within IAI47_02770at 575.266 kb on + strand, within IAI47_02770at 575.266 kb on + strand, within IAI47_02770at 575.267 kb on - strand, within IAI47_02770at 575.285 kb on + strand, within IAI47_02770at 575.286 kb on - strand, within IAI47_02770at 575.401 kb on + strandat 575.401 kb on + strandat 575.402 kb on - strandat 575.402 kb on - strandat 575.410 kb on + strandat 575.410 kb on + strandat 575.411 kb on - strandat 575.475 kb on - strandat 575.475 kb on - strandat 575.477 kb on + strandat 575.488 kb on - strandat 575.533 kb on + strandat 575.533 kb on + strandat 575.533 kb on + strandat 575.533 kb on + strandat 575.534 kb on - strandat 575.534 kb on - strandat 575.540 kb on + strandat 575.561 kb on + strandat 575.630 kb on + strandat 575.630 kb on + strandat 575.630 kb on + strandat 575.630 kb on + strandat 575.630 kb on + strandat 575.630 kb on + strandat 575.631 kb on - strandat 575.631 kb on - strandat 575.631 kb on - strandat 575.631 kb on - strandat 575.675 kb on - strandat 575.713 kb on + strandat 575.713 kb on + strandat 575.713 kb on + strandat 575.713 kb on + strandat 575.714 kb on - strandat 575.714 kb on - strandat 575.714 kb on - strandat 575.714 kb on - strandat 575.714 kb on - strandat 575.729 kb on - strandat 575.744 kb on + strandat 575.744 kb on + strandat 575.744 kb on + strandat 575.744 kb on + strandat 575.745 kb on - strandat 575.745 kb on - strandat 575.745 kb on - strandat 575.745 kb on - strandat 575.787 kb on + strand, within IAI47_02775at 575.787 kb on + strand, within IAI47_02775at 575.788 kb on - strand, within IAI47_02775at 575.810 kb on + strand, within IAI47_02775at 575.810 kb on + strand, within IAI47_02775at 575.811 kb on - strand, within IAI47_02775at 575.811 kb on - strand, within IAI47_02775at 575.938 kb on + strand, within IAI47_02775at 575.938 kb on + strand, within IAI47_02775at 575.939 kb on - strand, within IAI47_02775at 575.939 kb on - strand, within IAI47_02775at 575.939 kb on - strand, within IAI47_02775at 576.028 kb on + strandat 576.029 kb on - strandat 576.029 kb on - strandat 576.053 kb on + strandat 576.054 kb on - strandat 576.054 kb on - strandat 576.054 kb on - strandat 576.054 kb on - strandat 576.073 kb on + strandat 576.073 kb on + strandat 576.073 kb on + strandat 576.073 kb on + strandat 576.073 kb on + strandat 576.073 kb on + strandat 576.074 kb on - strandat 576.079 kb on + strandat 576.079 kb on + strandat 576.079 kb on + strandat 576.079 kb on + strandat 576.080 kb on - strandat 576.080 kb on - strandat 576.080 kb on - strandat 576.080 kb on - strandat 576.080 kb on - strandat 576.080 kb on - strandat 576.097 kb on + strandat 576.101 kb on + strandat 576.101 kb on + strandat 576.101 kb on + strandat 576.102 kb on - strandat 576.102 kb on - strandat 576.120 kb on - strand, within IAI47_02780at 576.120 kb on - strand, within IAI47_02780at 576.176 kb on + strand, within IAI47_02780at 576.177 kb on - strand, within IAI47_02780at 576.177 kb on - strand, within IAI47_02780at 576.222 kb on - strand, within IAI47_02780at 576.273 kb on + strand, within IAI47_02780at 576.273 kb on + strand, within IAI47_02780at 576.273 kb on + strand, within IAI47_02780at 576.273 kb on + strand, within IAI47_02780at 576.273 kb on + strand, within IAI47_02780at 576.274 kb on - strand, within IAI47_02780at 576.274 kb on - strand, within IAI47_02780at 576.274 kb on - strand, within IAI47_02780at 576.274 kb on - strand, within IAI47_02780at 576.274 kb on - strand, within IAI47_02780at 576.274 kb on - strand, within IAI47_02780at 576.274 kb on - strand, within IAI47_02780at 576.274 kb on - strand, within IAI47_02780at 576.274 kb on - strand, within IAI47_02780at 576.274 kb on - strand, within IAI47_02780at 576.274 kb on - strand, within IAI47_02780at 576.279 kb on + strand, within IAI47_02780at 576.279 kb on + strand, within IAI47_02780at 576.280 kb on - strand, within IAI47_02780at 576.296 kb on + strand, within IAI47_02780at 576.296 kb on + strand, within IAI47_02780at 576.296 kb on + strand, within IAI47_02780at 576.296 kb on + strand, within IAI47_02780at 576.296 kb on + strand, within IAI47_02780at 576.297 kb on - strand, within IAI47_02780at 576.297 kb on - strand, within IAI47_02780at 576.297 kb on - strand, within IAI47_02780at 576.297 kb on - strand, within IAI47_02780at 576.329 kb on + strand, within IAI47_02780at 576.329 kb on + strand, within IAI47_02780at 576.330 kb on - strand, within IAI47_02780at 576.347 kb on - strand, within IAI47_02780at 576.380 kb on - strand, within IAI47_02780at 576.380 kb on - strand, within IAI47_02780

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 2
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574,085 + IAI47_02765 0.34 +0.1
574,085 + IAI47_02765 0.34 -2.5
574,086 - IAI47_02765 0.34 -0.2
574,086 - IAI47_02765 0.34 -1.5
574,086 - IAI47_02765 0.34 +0.6
574,088 + IAI47_02765 0.34 +1.1
574,088 + IAI47_02765 0.34 +0.2
574,088 + IAI47_02765 0.34 -0.2
574,088 + IAI47_02765 0.34 +0.1
574,088 + IAI47_02765 0.34 +0.8
574,089 - IAI47_02765 0.34 -1.8
574,089 - IAI47_02765 0.34 +0.3
574,089 - IAI47_02765 0.34 +1.8
574,089 - IAI47_02765 0.34 -0.4
574,116 - IAI47_02765 0.36 +0.0
574,116 - IAI47_02765 0.36 +0.4
574,154 + IAI47_02765 0.39 -0.5
574,154 + IAI47_02765 0.39 +0.6
574,154 + IAI47_02765 0.39 +0.4
574,154 + IAI47_02765 0.39 +0.1
574,154 + IAI47_02765 0.39 -1.1
574,154 + IAI47_02765 0.39 +2.1
574,154 + IAI47_02765 0.39 -0.0
574,155 - IAI47_02765 0.39 -0.7
574,155 - IAI47_02765 0.39 +0.8
574,155 - IAI47_02765 0.39 -0.9
574,155 - IAI47_02765 0.39 -0.2
574,155 - IAI47_02765 0.39 -0.2
574,155 - IAI47_02765 0.39 -1.2
574,167 + IAI47_02765 0.40 +1.1
574,167 + IAI47_02765 0.40 -0.6
574,168 - IAI47_02765 0.40 +1.0
574,223 + IAI47_02765 0.44 +0.4
574,237 - IAI47_02765 0.45 -1.7
574,242 + IAI47_02765 0.46 -0.0
574,242 + IAI47_02765 0.46 +0.0
574,242 + IAI47_02765 0.46 -1.0
574,243 - IAI47_02765 0.46 +1.2
574,243 - IAI47_02765 0.46 -1.4
574,243 - IAI47_02765 0.46 +1.1
574,243 - IAI47_02765 0.46 -0.0
574,243 - IAI47_02765 0.46 -1.0
574,243 - IAI47_02765 0.46 +0.3
574,244 + IAI47_02765 0.46 -0.2
574,244 + IAI47_02765 0.46 +0.2
574,244 + IAI47_02765 0.46 -0.6
574,244 + IAI47_02765 0.46 -1.5
574,245 - IAI47_02765 0.46 -0.2
574,245 - IAI47_02765 0.46 +1.8
574,245 - IAI47_02765 0.46 -2.2
574,245 - IAI47_02765 0.46 -0.2
574,245 - IAI47_02765 0.46 +2.0
574,310 + IAI47_02765 0.51 -0.4
574,432 - IAI47_02765 0.60 +0.2
574,432 - IAI47_02765 0.60 -0.5
574,436 + IAI47_02765 0.60 +2.3
574,437 - IAI47_02765 0.60 -3.3
574,437 - IAI47_02765 0.60 +0.6
574,493 + IAI47_02765 0.64 +1.2
574,493 + IAI47_02765 0.64 -0.8
574,494 - IAI47_02765 0.64 +0.0
574,494 - IAI47_02765 0.64 -1.0
574,494 - IAI47_02765 0.64 -0.5
574,494 - IAI47_02765 0.64 -1.5
574,496 + IAI47_02765 0.64 -0.5
574,496 + IAI47_02765 0.64 -0.8
574,496 + IAI47_02765 0.64 +0.8
574,497 - IAI47_02765 0.65 +0.8
574,617 + IAI47_02765 0.73 -0.8
574,617 + IAI47_02765 0.73 -0.7
574,617 + IAI47_02765 0.73 -0.8
574,618 - IAI47_02765 0.73 -0.2
574,618 - IAI47_02765 0.73 +0.6
574,618 - IAI47_02765 0.73 -0.8
574,618 - IAI47_02765 0.73 -0.8
574,629 - IAI47_02765 0.74 -0.9
574,671 - IAI47_02765 0.77 -0.3
574,671 - IAI47_02765 0.77 +0.3
574,671 - IAI47_02765 0.77 -1.1
574,735 + IAI47_02765 0.82 -1.9
574,735 + IAI47_02765 0.82 -2.8
574,775 + IAI47_02765 0.85 -0.2
574,785 + IAI47_02765 0.86 -1.0
574,785 + IAI47_02765 0.86 +0.5
574,785 + IAI47_02765 0.86 +0.6
574,786 - IAI47_02765 0.86 +0.8
574,786 - IAI47_02765 0.86 -0.2
574,786 - IAI47_02765 0.86 +0.4
574,826 + IAI47_02765 0.89 -1.3
574,854 - -2.0
574,854 - +1.5
574,854 - -0.5
574,908 - +0.8
574,922 + -1.0
574,922 + -0.2
574,922 + +0.0
574,926 - -1.9
574,926 - -0.5
574,945 + +0.5
574,945 + -1.2
574,945 + -1.2
574,946 - -0.8
574,946 - +0.4
574,964 - +0.4
574,974 + -1.3
574,974 + +0.8
574,974 + -0.3
574,974 + +3.0
574,975 - +0.3
574,975 - +0.1
574,975 - +0.7
574,975 - +0.6
575,034 + -0.5
575,035 - +0.9
575,044 + +1.8
575,044 + +0.4
575,044 + -0.8
575,044 + +0.0
575,044 + +0.4
575,044 + -1.2
575,044 + +0.8
575,045 - +0.8
575,045 - +1.5
575,045 - +0.0
575,045 - +0.3
575,045 - -0.7
575,045 - +0.3
575,045 - -0.0
575,045 - -1.0
575,045 - +0.8
575,045 - -0.2
575,045 - +0.3
575,045 - -1.0
575,099 + IAI47_02770 0.16 -0.5
575,100 - IAI47_02770 0.16 +0.8
575,122 + IAI47_02770 0.21 +0.5
575,122 + IAI47_02770 0.21 +0.8
575,243 - IAI47_02770 0.53 +0.8
575,266 + IAI47_02770 0.59 -0.2
575,266 + IAI47_02770 0.59 -0.6
575,267 - IAI47_02770 0.59 -0.9
575,285 + IAI47_02770 0.64 +0.4
575,286 - IAI47_02770 0.64 -1.5
575,401 + -0.1
575,401 + +0.1
575,402 - -1.8
575,402 - +1.8
575,410 + +0.6
575,410 + -1.8
575,411 - +0.6
575,475 - -0.4
575,475 - -0.5
575,477 + -1.2
575,488 - -0.2
575,533 + +1.1
575,533 + +0.1
575,533 + -1.0
575,533 + -0.3
575,534 - -0.2
575,534 - -0.2
575,540 + -2.0
575,561 + -0.3
575,630 + -0.8
575,630 + +0.8
575,630 + +0.8
575,630 + -0.4
575,630 + -1.4
575,630 + +0.4
575,631 - +0.3
575,631 - -1.0
575,631 - -1.2
575,631 - -0.7
575,675 - -1.0
575,713 + -0.4
575,713 + +0.4
575,713 + +0.4
575,713 + -1.5
575,714 - +0.3
575,714 - -0.1
575,714 - +0.6
575,714 - +0.3
575,714 - -0.7
575,729 - -0.2
575,744 + -1.2
575,744 + -0.9
575,744 + -1.5
575,744 + -0.2
575,745 - +0.9
575,745 - -0.4
575,745 - +1.0
575,745 - +1.2
575,787 + IAI47_02775 0.20 -0.2
575,787 + IAI47_02775 0.20 -0.3
575,788 - IAI47_02775 0.20 -0.5
575,810 + IAI47_02775 0.27 -1.1
575,810 + IAI47_02775 0.27 -1.2
575,811 - IAI47_02775 0.27 +0.4
575,811 - IAI47_02775 0.27 +0.4
575,938 + IAI47_02775 0.65 -2.2
575,938 + IAI47_02775 0.65 +0.6
575,939 - IAI47_02775 0.65 -0.4
575,939 - IAI47_02775 0.65 +0.3
575,939 - IAI47_02775 0.65 -1.2
576,028 + +0.8
576,029 - +0.8
576,029 - -0.2
576,053 + +0.0
576,054 - -0.2
576,054 - -0.0
576,054 - -0.6
576,054 - -0.7
576,073 + -1.5
576,073 + -0.4
576,073 + -1.2
576,073 + +0.8
576,073 + -0.5
576,073 + -0.4
576,074 - +0.5
576,079 + +0.5
576,079 + +1.0
576,079 + +0.3
576,079 + -0.8
576,080 - +0.0
576,080 - -1.0
576,080 - -1.5
576,080 - +1.2
576,080 - +0.6
576,080 - -1.5
576,097 + +0.4
576,101 + -0.5
576,101 + -2.2
576,101 + +1.4
576,102 - -0.7
576,102 - +0.2
576,120 - IAI47_02780 0.14 -0.2
576,120 - IAI47_02780 0.14 +0.4
576,176 + IAI47_02780 0.30 -0.2
576,177 - IAI47_02780 0.30 +0.4
576,177 - IAI47_02780 0.30 +1.4
576,222 - IAI47_02780 0.43 +1.0
576,273 + IAI47_02780 0.57 -1.0
576,273 + IAI47_02780 0.57 +2.8
576,273 + IAI47_02780 0.57 -0.2
576,273 + IAI47_02780 0.57 -0.4
576,273 + IAI47_02780 0.57 -0.0
576,274 - IAI47_02780 0.57 -0.4
576,274 - IAI47_02780 0.57 -0.0
576,274 - IAI47_02780 0.57 +0.4
576,274 - IAI47_02780 0.57 +0.2
576,274 - IAI47_02780 0.57 -0.5
576,274 - IAI47_02780 0.57 -0.8
576,274 - IAI47_02780 0.57 +0.8
576,274 - IAI47_02780 0.57 -0.0
576,274 - IAI47_02780 0.57 -0.4
576,274 - IAI47_02780 0.57 -0.9
576,274 - IAI47_02780 0.57 +0.5
576,279 + IAI47_02780 0.59 +0.4
576,279 + IAI47_02780 0.59 -0.6
576,280 - IAI47_02780 0.59 +0.8
576,296 + IAI47_02780 0.64 -0.4
576,296 + IAI47_02780 0.64 -1.6
576,296 + IAI47_02780 0.64 +1.3
576,296 + IAI47_02780 0.64 -0.7
576,296 + IAI47_02780 0.64 -0.0
576,297 - IAI47_02780 0.64 -0.1
576,297 - IAI47_02780 0.64 +0.0
576,297 - IAI47_02780 0.64 +0.5
576,297 - IAI47_02780 0.64 -2.0
576,329 + IAI47_02780 0.73 +0.8
576,329 + IAI47_02780 0.73 +0.3
576,330 - IAI47_02780 0.73 +1.0
576,347 - IAI47_02780 0.78 +0.2
576,380 - IAI47_02780 0.87 -0.1
576,380 - IAI47_02780 0.87 -0.2

Or see this region's nucleotide sequence