Experiment: Ying_AminoAcid20 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_02085 and IAI47_02090 are separated by 68 nucleotides IAI47_02090 and IAI47_02095 are separated by 171 nucleotides IAI47_02095 and IAI47_02100 are separated by 99 nucleotides IAI47_02100 and IAI47_02105 overlap by 14 nucleotides
IAI47_02085: IAI47_02085 - elongation factor G, at 448,713 to 450,827
_02085
IAI47_02090: IAI47_02090 - elongation factor Tu, at 450,896 to 452,080
_02090
IAI47_02095: IAI47_02095 - bacterioferritin-associated ferredoxin, at 452,252 to 452,446
_02095
IAI47_02100: IAI47_02100 - bacterioferritin, at 452,546 to 453,019
_02100
IAI47_02105: IAI47_02105 - prepilin peptidase, at 453,006 to 453,779
_02105
Position (kb) 450
451
452
453 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 450.825 kb on + strand at 450.826 kb on - strand at 450.881 kb on + strand at 450.881 kb on + strand at 450.882 kb on - strand at 450.882 kb on - strand at 450.889 kb on + strand at 450.967 kb on + strand at 450.999 kb on + strand at 450.999 kb on + strand at 451.006 kb on + strand at 451.075 kb on + strand, within IAI47_02090 at 451.103 kb on + strand, within IAI47_02090 at 451.157 kb on + strand, within IAI47_02090 at 451.158 kb on - strand, within IAI47_02090 at 451.344 kb on + strand, within IAI47_02090 at 451.376 kb on + strand, within IAI47_02090 at 451.376 kb on + strand, within IAI47_02090 at 451.376 kb on + strand, within IAI47_02090 at 451.376 kb on + strand, within IAI47_02090 at 451.376 kb on + strand, within IAI47_02090 at 451.377 kb on - strand, within IAI47_02090 at 451.377 kb on - strand, within IAI47_02090 at 451.486 kb on + strand, within IAI47_02090 at 451.490 kb on + strand, within IAI47_02090 at 451.490 kb on + strand, within IAI47_02090 at 451.490 kb on + strand, within IAI47_02090 at 451.491 kb on - strand, within IAI47_02090 at 451.491 kb on - strand, within IAI47_02090 at 452.065 kb on + strand at 452.078 kb on + strand at 452.078 kb on + strand at 452.078 kb on + strand at 452.078 kb on + strand at 452.087 kb on + strand at 452.096 kb on + strand at 452.096 kb on + strand at 452.096 kb on + strand at 452.096 kb on + strand at 452.097 kb on - strand at 452.097 kb on - strand at 452.126 kb on + strand at 452.126 kb on + strand at 452.126 kb on + strand at 452.126 kb on + strand at 452.127 kb on - strand at 452.164 kb on + strand at 452.164 kb on + strand at 452.171 kb on + strand at 452.205 kb on - strand at 452.224 kb on - strand at 452.226 kb on - strand at 452.226 kb on - strand at 452.255 kb on + strand at 452.255 kb on + strand at 452.255 kb on + strand at 452.255 kb on + strand at 452.255 kb on + strand at 452.255 kb on + strand at 452.255 kb on + strand at 452.255 kb on + strand at 452.255 kb on + strand at 452.255 kb on + strand at 452.255 kb on + strand at 452.256 kb on - strand at 452.256 kb on - strand at 452.256 kb on - strand at 452.256 kb on - strand at 452.256 kb on - strand at 452.256 kb on - strand at 452.256 kb on - strand at 452.256 kb on - strand at 452.269 kb on + strand at 452.269 kb on + strand at 452.269 kb on + strand at 452.269 kb on + strand at 452.269 kb on + strand at 452.269 kb on + strand at 452.270 kb on - strand at 452.270 kb on - strand at 452.270 kb on - strand at 452.270 kb on - strand at 452.270 kb on - strand at 452.270 kb on - strand at 452.270 kb on - strand at 452.270 kb on - strand at 452.270 kb on - strand at 452.284 kb on + strand, within IAI47_02095 at 452.284 kb on + strand, within IAI47_02095 at 452.284 kb on + strand, within IAI47_02095 at 452.284 kb on + strand, within IAI47_02095 at 452.284 kb on + strand, within IAI47_02095 at 452.285 kb on - strand, within IAI47_02095 at 452.285 kb on - strand, within IAI47_02095 at 452.312 kb on + strand, within IAI47_02095 at 452.312 kb on + strand, within IAI47_02095 at 452.313 kb on - strand, within IAI47_02095 at 452.327 kb on - strand, within IAI47_02095 at 452.355 kb on + strand, within IAI47_02095 at 452.356 kb on - strand, within IAI47_02095 at 452.356 kb on - strand, within IAI47_02095 at 452.356 kb on - strand, within IAI47_02095 at 452.429 kb on + strand at 452.430 kb on - strand at 452.430 kb on - strand at 452.431 kb on + strand at 452.432 kb on - strand at 452.432 kb on - strand at 452.439 kb on + strand at 452.439 kb on + strand at 452.440 kb on - strand at 452.440 kb on - strand at 452.440 kb on - strand at 452.440 kb on - strand at 452.440 kb on - strand at 452.440 kb on - strand at 452.466 kb on - strand at 452.474 kb on + strand at 452.474 kb on + strand at 452.474 kb on + strand at 452.474 kb on + strand at 452.475 kb on - strand at 452.475 kb on - strand at 452.475 kb on - strand at 452.475 kb on - strand at 452.475 kb on - strand at 452.475 kb on - strand at 452.477 kb on - strand at 452.512 kb on + strand at 452.512 kb on + strand at 452.512 kb on + strand at 452.513 kb on - strand at 452.513 kb on - strand at 452.519 kb on + strand at 452.520 kb on - strand at 452.520 kb on - strand at 452.520 kb on - strand at 452.520 kb on - strand at 452.523 kb on - strand at 452.523 kb on - strand at 452.541 kb on + strand at 452.542 kb on - strand at 452.558 kb on - strand at 452.558 kb on - strand at 452.567 kb on - strand at 452.569 kb on + strand at 452.569 kb on + strand at 452.569 kb on + strand at 452.570 kb on - strand at 452.581 kb on + strand at 452.619 kb on - strand, within IAI47_02100 at 452.678 kb on + strand, within IAI47_02100 at 452.679 kb on - strand, within IAI47_02100 at 452.717 kb on + strand, within IAI47_02100 at 452.717 kb on + strand, within IAI47_02100 at 452.717 kb on + strand, within IAI47_02100 at 452.717 kb on + strand, within IAI47_02100 at 452.717 kb on + strand, within IAI47_02100 at 452.717 kb on + strand, within IAI47_02100 at 452.717 kb on + strand, within IAI47_02100 at 452.718 kb on - strand, within IAI47_02100 at 452.718 kb on - strand, within IAI47_02100 at 452.718 kb on - strand, within IAI47_02100 at 452.718 kb on - strand, within IAI47_02100 at 452.718 kb on - strand, within IAI47_02100 at 452.718 kb on - strand, within IAI47_02100 at 452.718 kb on - strand, within IAI47_02100 at 452.718 kb on - strand, within IAI47_02100 at 452.718 kb on - strand, within IAI47_02100 at 452.718 kb on - strand, within IAI47_02100 at 452.718 kb on - strand, within IAI47_02100 at 452.718 kb on - strand, within IAI47_02100 at 452.718 kb on - strand, within IAI47_02100 at 452.719 kb on + strand, within IAI47_02100 at 452.720 kb on - strand, within IAI47_02100 at 452.720 kb on - strand, within IAI47_02100 at 452.720 kb on - strand, within IAI47_02100 at 452.720 kb on - strand, within IAI47_02100 at 452.780 kb on - strand, within IAI47_02100 at 452.839 kb on + strand, within IAI47_02100 at 452.840 kb on - strand, within IAI47_02100 at 452.857 kb on + strand, within IAI47_02100 at 452.857 kb on + strand, within IAI47_02100 at 452.857 kb on + strand, within IAI47_02100 at 452.857 kb on + strand, within IAI47_02100 at 452.857 kb on + strand, within IAI47_02100 at 452.857 kb on + strand, within IAI47_02100 at 452.857 kb on + strand, within IAI47_02100 at 452.858 kb on - strand, within IAI47_02100 at 452.858 kb on - strand, within IAI47_02100 at 452.858 kb on - strand, within IAI47_02100 at 452.864 kb on + strand, within IAI47_02100 at 452.864 kb on + strand, within IAI47_02100 at 452.864 kb on + strand, within IAI47_02100 at 452.864 kb on + strand, within IAI47_02100 at 452.864 kb on + strand, within IAI47_02100 at 452.864 kb on + strand, within IAI47_02100 at 452.864 kb on + strand, within IAI47_02100 at 452.864 kb on + strand, within IAI47_02100 at 452.864 kb on + strand, within IAI47_02100 at 452.865 kb on - strand, within IAI47_02100 at 452.865 kb on - strand, within IAI47_02100 at 452.865 kb on - strand, within IAI47_02100 at 452.865 kb on - strand, within IAI47_02100 at 452.865 kb on - strand, within IAI47_02100 at 452.865 kb on - strand, within IAI47_02100 at 452.865 kb on - strand, within IAI47_02100 at 452.865 kb on - strand, within IAI47_02100 at 452.865 kb on - strand, within IAI47_02100 at 452.872 kb on + strand, within IAI47_02100 at 452.872 kb on + strand, within IAI47_02100 at 452.873 kb on - strand, within IAI47_02100 at 452.873 kb on - strand, within IAI47_02100 at 452.885 kb on + strand, within IAI47_02100 at 452.885 kb on + strand, within IAI47_02100 at 452.885 kb on + strand, within IAI47_02100 at 452.885 kb on + strand, within IAI47_02100 at 452.885 kb on + strand, within IAI47_02100 at 452.885 kb on + strand, within IAI47_02100 at 452.885 kb on + strand, within IAI47_02100 at 452.885 kb on + strand, within IAI47_02100 at 452.885 kb on + strand, within IAI47_02100 at 452.885 kb on + strand, within IAI47_02100 at 452.885 kb on + strand, within IAI47_02100 at 452.885 kb on + strand, within IAI47_02100 at 452.885 kb on + strand, within IAI47_02100 at 452.886 kb on - strand, within IAI47_02100 at 452.886 kb on - strand, within IAI47_02100 at 452.886 kb on - strand, within IAI47_02100 at 452.886 kb on - strand, within IAI47_02100 at 452.886 kb on - strand, within IAI47_02100 at 452.906 kb on + strand, within IAI47_02100 at 452.990 kb on + strand at 452.990 kb on + strand at 452.990 kb on + strand at 452.990 kb on + strand at 452.990 kb on + strand at 452.990 kb on + strand at 452.990 kb on + strand at 452.991 kb on - strand at 452.991 kb on - strand at 452.991 kb on - strand at 453.033 kb on + strand at 453.033 kb on + strand at 453.033 kb on + strand at 453.033 kb on + strand at 453.033 kb on + strand at 453.033 kb on + strand at 453.033 kb on + strand at 453.034 kb on - strand at 453.034 kb on - strand at 453.034 kb on - strand at 453.034 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 2 remove 450,825 + +0.8 450,826 - -1.5 450,881 + -1.3 450,881 + +1.4 450,882 - -0.4 450,882 - -0.4 450,889 + -1.8 450,967 + -2.2 450,999 + -1.5 450,999 + -0.8 451,006 + -0.9 451,075 + IAI47_02090 0.15 -0.8 451,103 + IAI47_02090 0.17 -1.5 451,157 + IAI47_02090 0.22 +1.5 451,158 - IAI47_02090 0.22 +0.4 451,344 + IAI47_02090 0.38 -0.8 451,376 + IAI47_02090 0.41 -0.2 451,376 + IAI47_02090 0.41 -0.5 451,376 + IAI47_02090 0.41 -1.2 451,376 + IAI47_02090 0.41 -0.6 451,376 + IAI47_02090 0.41 +0.8 451,377 - IAI47_02090 0.41 -2.0 451,377 - IAI47_02090 0.41 -1.0 451,486 + IAI47_02090 0.50 -1.5 451,490 + IAI47_02090 0.50 -1.8 451,490 + IAI47_02090 0.50 +0.8 451,490 + IAI47_02090 0.50 -0.8 451,491 - IAI47_02090 0.50 -0.4 451,491 - IAI47_02090 0.50 -0.5 452,065 + -2.0 452,078 + +0.6 452,078 + +0.8 452,078 + -1.5 452,078 + -0.7 452,087 + -0.3 452,096 + -2.7 452,096 + +0.8 452,096 + -0.7 452,096 + -1.2 452,097 - +0.5 452,097 - +1.4 452,126 + -1.3 452,126 + -0.0 452,126 + -0.5 452,126 + -0.0 452,127 - -0.8 452,164 + +1.2 452,164 + +0.6 452,171 + +1.1 452,205 - +1.1 452,224 - -0.9 452,226 - -0.2 452,226 - +0.5 452,255 + +1.1 452,255 + -1.7 452,255 + -0.5 452,255 + +0.8 452,255 + -0.4 452,255 + +1.6 452,255 + -1.4 452,255 + -0.4 452,255 + +0.6 452,255 + -0.1 452,255 + -0.4 452,256 - -0.8 452,256 - -0.2 452,256 - +0.2 452,256 - +0.5 452,256 - +0.8 452,256 - -0.7 452,256 - -0.4 452,256 - -0.2 452,269 + +0.8 452,269 + +1.8 452,269 + -0.0 452,269 + +1.4 452,269 + +1.4 452,269 + +1.2 452,270 - +0.9 452,270 - -0.2 452,270 - +1.1 452,270 - -0.1 452,270 - -0.4 452,270 - +0.1 452,270 - +0.7 452,270 - +0.7 452,270 - -0.6 452,284 + IAI47_02095 0.16 -0.2 452,284 + IAI47_02095 0.16 +1.8 452,284 + IAI47_02095 0.16 -1.1 452,284 + IAI47_02095 0.16 -0.9 452,284 + IAI47_02095 0.16 +0.8 452,285 - IAI47_02095 0.17 -0.2 452,285 - IAI47_02095 0.17 +0.5 452,312 + IAI47_02095 0.31 +0.3 452,312 + IAI47_02095 0.31 +0.6 452,313 - IAI47_02095 0.31 +0.8 452,327 - IAI47_02095 0.38 +1.8 452,355 + IAI47_02095 0.53 +1.0 452,356 - IAI47_02095 0.53 -0.4 452,356 - IAI47_02095 0.53 -0.5 452,356 - IAI47_02095 0.53 +1.4 452,429 + -0.3 452,430 - +0.4 452,430 - +0.6 452,431 + -1.3 452,432 - +2.1 452,432 - +1.4 452,439 + +1.2 452,439 + +0.3 452,440 - -0.0 452,440 - -0.0 452,440 - +1.0 452,440 - -0.2 452,440 - -0.5 452,440 - -1.0 452,466 - -0.4 452,474 + -0.3 452,474 + -0.5 452,474 + +0.2 452,474 + -1.4 452,475 - -0.5 452,475 - -0.7 452,475 - -0.1 452,475 - +1.1 452,475 - -0.7 452,475 - +0.2 452,477 - +0.8 452,512 + +1.4 452,512 + -0.6 452,512 + +0.8 452,513 - -0.5 452,513 - +0.8 452,519 + -0.8 452,520 - +0.3 452,520 - -0.6 452,520 - +0.1 452,520 - -0.9 452,523 - -2.5 452,523 - +0.2 452,541 + +3.7 452,542 - +0.1 452,558 - +0.6 452,558 - -1.2 452,567 - -0.9 452,569 + +1.4 452,569 + -0.5 452,569 + -0.8 452,570 - -1.8 452,581 + +1.6 452,619 - IAI47_02100 0.15 +0.1 452,678 + IAI47_02100 0.28 -0.5 452,679 - IAI47_02100 0.28 -0.0 452,717 + IAI47_02100 0.36 -1.6 452,717 + IAI47_02100 0.36 +0.8 452,717 + IAI47_02100 0.36 -0.8 452,717 + IAI47_02100 0.36 -0.4 452,717 + IAI47_02100 0.36 -0.2 452,717 + IAI47_02100 0.36 -0.5 452,717 + IAI47_02100 0.36 -0.3 452,718 - IAI47_02100 0.36 +2.4 452,718 - IAI47_02100 0.36 +0.2 452,718 - IAI47_02100 0.36 -0.0 452,718 - IAI47_02100 0.36 -1.1 452,718 - IAI47_02100 0.36 +0.2 452,718 - IAI47_02100 0.36 -0.5 452,718 - IAI47_02100 0.36 -0.5 452,718 - IAI47_02100 0.36 -1.8 452,718 - IAI47_02100 0.36 +0.3 452,718 - IAI47_02100 0.36 +0.4 452,718 - IAI47_02100 0.36 -0.3 452,718 - IAI47_02100 0.36 +0.2 452,718 - IAI47_02100 0.36 +0.3 452,719 + IAI47_02100 0.36 -0.4 452,720 - IAI47_02100 0.37 +0.0 452,720 - IAI47_02100 0.37 +0.3 452,720 - IAI47_02100 0.37 +0.5 452,720 - IAI47_02100 0.37 -0.9 452,780 - IAI47_02100 0.49 +1.3 452,839 + IAI47_02100 0.62 +0.5 452,840 - IAI47_02100 0.62 +0.5 452,857 + IAI47_02100 0.66 -0.3 452,857 + IAI47_02100 0.66 +0.1 452,857 + IAI47_02100 0.66 +1.1 452,857 + IAI47_02100 0.66 -0.2 452,857 + IAI47_02100 0.66 -0.5 452,857 + IAI47_02100 0.66 -1.2 452,857 + IAI47_02100 0.66 +0.0 452,858 - IAI47_02100 0.66 +0.6 452,858 - IAI47_02100 0.66 +0.1 452,858 - IAI47_02100 0.66 +0.6 452,864 + IAI47_02100 0.67 -1.3 452,864 + IAI47_02100 0.67 -0.6 452,864 + IAI47_02100 0.67 -1.1 452,864 + IAI47_02100 0.67 +1.2 452,864 + IAI47_02100 0.67 -0.2 452,864 + IAI47_02100 0.67 +0.4 452,864 + IAI47_02100 0.67 -0.5 452,864 + IAI47_02100 0.67 +1.2 452,864 + IAI47_02100 0.67 +0.0 452,865 - IAI47_02100 0.67 +0.3 452,865 - IAI47_02100 0.67 -0.3 452,865 - IAI47_02100 0.67 -0.6 452,865 - IAI47_02100 0.67 -0.1 452,865 - IAI47_02100 0.67 -0.3 452,865 - IAI47_02100 0.67 +0.3 452,865 - IAI47_02100 0.67 +0.1 452,865 - IAI47_02100 0.67 +0.6 452,865 - IAI47_02100 0.67 +0.4 452,872 + IAI47_02100 0.69 +0.3 452,872 + IAI47_02100 0.69 -0.5 452,873 - IAI47_02100 0.69 +2.1 452,873 - IAI47_02100 0.69 -0.3 452,885 + IAI47_02100 0.72 +0.3 452,885 + IAI47_02100 0.72 +0.6 452,885 + IAI47_02100 0.72 -1.4 452,885 + IAI47_02100 0.72 +0.3 452,885 + IAI47_02100 0.72 -0.2 452,885 + IAI47_02100 0.72 +0.8 452,885 + IAI47_02100 0.72 +0.4 452,885 + IAI47_02100 0.72 -2.8 452,885 + IAI47_02100 0.72 +0.4 452,885 + IAI47_02100 0.72 +0.4 452,885 + IAI47_02100 0.72 -2.0 452,885 + IAI47_02100 0.72 +0.4 452,885 + IAI47_02100 0.72 -0.8 452,886 - IAI47_02100 0.72 +1.1 452,886 - IAI47_02100 0.72 +0.8 452,886 - IAI47_02100 0.72 +0.1 452,886 - IAI47_02100 0.72 -0.1 452,886 - IAI47_02100 0.72 -2.0 452,906 + IAI47_02100 0.76 -1.3 452,990 + -1.2 452,990 + +1.0 452,990 + +1.8 452,990 + -0.8 452,990 + +0.5 452,990 + -0.1 452,990 + +0.1 452,991 - +0.4 452,991 - +1.6 452,991 - -0.3 453,033 + -0.2 453,033 + +0.8 453,033 + -1.8 453,033 + -0.2 453,033 + +0.5 453,033 + +1.2 453,033 + -0.5 453,034 - -0.3 453,034 - -0.2 453,034 - -0.8 453,034 - +0.8
Or see this region's nucleotide sequence