Experiment: Ying_AminoAcid20 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_00745 and IAI47_00750 overlap by 4 nucleotides IAI47_00750 and IAI47_00755 are separated by 35 nucleotides IAI47_00755 and IAI47_00760 overlap by 4 nucleotides IAI47_00760 and IAI47_00765 are separated by 148 nucleotides
IAI47_00745: IAI47_00745 - serine O-acetyltransferase, at 159,085 to 159,906
_00745
IAI47_00750: IAI47_00750 - tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL, at 159,903 to 160,376
_00750
IAI47_00755: IAI47_00755 - envelope stress sensor histidine kinase CpxA, at 160,412 to 161,791
_00755
IAI47_00760: IAI47_00760 - envelope stress response regulator transcription factor CpxR, at 161,788 to 162,483
_00760
IAI47_00765: IAI47_00765 - cell-envelope stress modulator CpxP, at 162,632 to 163,141
_00765
Position (kb) 160
161
162 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 159.849 kb on + strand at 159.849 kb on + strand at 159.849 kb on + strand at 159.849 kb on + strand at 159.850 kb on - strand at 159.904 kb on + strand at 159.904 kb on + strand at 159.904 kb on + strand at 159.904 kb on + strand at 159.904 kb on + strand at 159.905 kb on - strand at 159.905 kb on - strand at 159.905 kb on - strand at 159.905 kb on - strand at 159.928 kb on + strand at 159.952 kb on + strand, within IAI47_00750 at 159.953 kb on - strand, within IAI47_00750 at 159.953 kb on - strand, within IAI47_00750 at 159.953 kb on - strand, within IAI47_00750 at 159.966 kb on + strand, within IAI47_00750 at 159.966 kb on + strand, within IAI47_00750 at 159.966 kb on + strand, within IAI47_00750 at 159.987 kb on - strand, within IAI47_00750 at 160.090 kb on + strand, within IAI47_00750 at 160.091 kb on - strand, within IAI47_00750 at 160.105 kb on + strand, within IAI47_00750 at 160.189 kb on + strand, within IAI47_00750 at 160.189 kb on + strand, within IAI47_00750 at 160.190 kb on - strand, within IAI47_00750 at 160.190 kb on - strand, within IAI47_00750 at 160.190 kb on - strand, within IAI47_00750 at 160.190 kb on - strand, within IAI47_00750 at 160.226 kb on - strand, within IAI47_00750 at 160.245 kb on + strand, within IAI47_00750 at 160.246 kb on - strand, within IAI47_00750 at 160.246 kb on - strand, within IAI47_00750 at 160.246 kb on - strand, within IAI47_00750 at 160.325 kb on + strand, within IAI47_00750 at 160.325 kb on + strand, within IAI47_00750 at 160.325 kb on + strand, within IAI47_00750 at 160.325 kb on + strand, within IAI47_00750 at 160.325 kb on + strand, within IAI47_00750 at 160.325 kb on + strand, within IAI47_00750 at 160.325 kb on + strand, within IAI47_00750 at 160.326 kb on - strand, within IAI47_00750 at 160.326 kb on - strand, within IAI47_00750 at 160.326 kb on - strand, within IAI47_00750 at 160.326 kb on - strand, within IAI47_00750 at 160.326 kb on - strand, within IAI47_00750 at 160.326 kb on - strand, within IAI47_00750 at 160.326 kb on - strand, within IAI47_00750 at 160.334 kb on + strand at 160.370 kb on + strand at 160.370 kb on + strand at 160.370 kb on + strand at 160.370 kb on + strand at 160.370 kb on + strand at 160.370 kb on + strand at 160.371 kb on - strand at 160.371 kb on - strand at 160.371 kb on - strand at 160.376 kb on + strand at 160.376 kb on + strand at 160.376 kb on + strand at 160.376 kb on + strand at 160.377 kb on - strand at 160.377 kb on - strand at 160.377 kb on - strand at 160.377 kb on - strand at 160.377 kb on - strand at 160.406 kb on - strand at 160.406 kb on - strand at 160.406 kb on - strand at 160.414 kb on - strand at 160.431 kb on + strand at 160.431 kb on + strand at 160.431 kb on + strand at 160.466 kb on + strand at 160.486 kb on + strand at 160.486 kb on + strand at 160.487 kb on - strand at 160.582 kb on - strand, within IAI47_00755 at 160.663 kb on + strand, within IAI47_00755 at 160.664 kb on - strand, within IAI47_00755 at 160.701 kb on + strand, within IAI47_00755 at 160.723 kb on + strand, within IAI47_00755 at 160.723 kb on + strand, within IAI47_00755 at 160.724 kb on - strand, within IAI47_00755 at 160.761 kb on + strand, within IAI47_00755 at 160.761 kb on + strand, within IAI47_00755 at 160.762 kb on - strand, within IAI47_00755 at 160.762 kb on - strand, within IAI47_00755 at 160.858 kb on + strand, within IAI47_00755 at 160.894 kb on + strand, within IAI47_00755 at 160.895 kb on - strand, within IAI47_00755 at 160.895 kb on - strand, within IAI47_00755 at 160.927 kb on + strand, within IAI47_00755 at 160.978 kb on + strand, within IAI47_00755 at 160.978 kb on + strand, within IAI47_00755 at 160.979 kb on - strand, within IAI47_00755 at 161.056 kb on + strand, within IAI47_00755 at 161.057 kb on - strand, within IAI47_00755 at 161.116 kb on + strand, within IAI47_00755 at 161.116 kb on + strand, within IAI47_00755 at 161.116 kb on + strand, within IAI47_00755 at 161.117 kb on - strand, within IAI47_00755 at 161.177 kb on + strand, within IAI47_00755 at 161.177 kb on + strand, within IAI47_00755 at 161.177 kb on + strand, within IAI47_00755 at 161.177 kb on + strand, within IAI47_00755 at 161.177 kb on + strand, within IAI47_00755 at 161.177 kb on + strand, within IAI47_00755 at 161.208 kb on + strand, within IAI47_00755 at 161.209 kb on - strand, within IAI47_00755 at 161.209 kb on - strand, within IAI47_00755 at 161.209 kb on - strand, within IAI47_00755 at 161.218 kb on + strand, within IAI47_00755 at 161.219 kb on - strand, within IAI47_00755 at 161.219 kb on - strand, within IAI47_00755 at 161.219 kb on - strand, within IAI47_00755 at 161.219 kb on - strand, within IAI47_00755 at 161.219 kb on - strand, within IAI47_00755 at 161.287 kb on + strand, within IAI47_00755 at 161.341 kb on + strand, within IAI47_00755 at 161.341 kb on + strand, within IAI47_00755 at 161.341 kb on + strand, within IAI47_00755 at 161.341 kb on + strand, within IAI47_00755 at 161.342 kb on - strand, within IAI47_00755 at 161.342 kb on - strand, within IAI47_00755 at 161.342 kb on - strand, within IAI47_00755 at 161.342 kb on - strand, within IAI47_00755 at 161.361 kb on + strand, within IAI47_00755 at 161.361 kb on + strand, within IAI47_00755 at 161.361 kb on + strand, within IAI47_00755 at 161.361 kb on + strand, within IAI47_00755 at 161.361 kb on + strand, within IAI47_00755 at 161.361 kb on + strand, within IAI47_00755 at 161.361 kb on + strand, within IAI47_00755 at 161.361 kb on + strand, within IAI47_00755 at 161.362 kb on - strand, within IAI47_00755 at 161.362 kb on - strand, within IAI47_00755 at 161.362 kb on - strand, within IAI47_00755 at 161.362 kb on - strand, within IAI47_00755 at 161.362 kb on - strand, within IAI47_00755 at 161.362 kb on - strand, within IAI47_00755 at 161.362 kb on - strand, within IAI47_00755 at 161.362 kb on - strand, within IAI47_00755 at 161.370 kb on + strand, within IAI47_00755 at 161.371 kb on - strand, within IAI47_00755 at 161.374 kb on + strand, within IAI47_00755 at 161.375 kb on - strand, within IAI47_00755 at 161.375 kb on - strand, within IAI47_00755 at 161.375 kb on - strand, within IAI47_00755 at 161.375 kb on - strand, within IAI47_00755 at 161.375 kb on - strand, within IAI47_00755 at 161.375 kb on - strand, within IAI47_00755 at 161.375 kb on - strand, within IAI47_00755 at 161.375 kb on - strand, within IAI47_00755 at 161.375 kb on - strand, within IAI47_00755 at 161.406 kb on - strand, within IAI47_00755 at 161.424 kb on + strand, within IAI47_00755 at 161.424 kb on + strand, within IAI47_00755 at 161.424 kb on + strand, within IAI47_00755 at 161.424 kb on + strand, within IAI47_00755 at 161.425 kb on - strand, within IAI47_00755 at 161.425 kb on - strand, within IAI47_00755 at 161.494 kb on + strand, within IAI47_00755 at 161.494 kb on + strand, within IAI47_00755 at 161.495 kb on - strand, within IAI47_00755 at 161.495 kb on - strand, within IAI47_00755 at 161.495 kb on - strand, within IAI47_00755 at 161.495 kb on - strand, within IAI47_00755 at 161.495 kb on - strand at 161.495 kb on - strand, within IAI47_00755 at 161.528 kb on + strand, within IAI47_00755 at 161.528 kb on + strand, within IAI47_00755 at 161.529 kb on - strand, within IAI47_00755 at 161.531 kb on + strand, within IAI47_00755 at 161.531 kb on + strand, within IAI47_00755 at 161.531 kb on + strand, within IAI47_00755 at 161.531 kb on + strand, within IAI47_00755 at 161.531 kb on + strand, within IAI47_00755 at 161.532 kb on - strand, within IAI47_00755 at 161.532 kb on - strand, within IAI47_00755 at 161.532 kb on - strand, within IAI47_00755 at 161.767 kb on + strand at 161.767 kb on + strand at 161.767 kb on + strand at 161.768 kb on - strand at 161.825 kb on - strand at 161.887 kb on - strand, within IAI47_00760 at 161.887 kb on - strand, within IAI47_00760 at 161.887 kb on - strand, within IAI47_00760 at 161.887 kb on - strand, within IAI47_00760 at 161.893 kb on - strand, within IAI47_00760 at 161.991 kb on - strand, within IAI47_00760 at 162.027 kb on + strand, within IAI47_00760 at 162.195 kb on - strand, within IAI47_00760 at 162.195 kb on - strand, within IAI47_00760 at 162.195 kb on - strand, within IAI47_00760 at 162.195 kb on - strand, within IAI47_00760 at 162.477 kb on + strand at 162.528 kb on + strand at 162.528 kb on + strand at 162.529 kb on - strand at 162.529 kb on - strand at 162.529 kb on - strand at 162.540 kb on + strand at 162.540 kb on + strand at 162.585 kb on - strand at 162.626 kb on + strand at 162.626 kb on + strand at 162.626 kb on + strand at 162.627 kb on - strand at 162.628 kb on + strand at 162.628 kb on + strand at 162.628 kb on + strand at 162.628 kb on + strand at 162.628 kb on + strand at 162.628 kb on + strand at 162.629 kb on - strand at 162.629 kb on - strand at 162.629 kb on - strand at 162.629 kb on - strand at 162.697 kb on + strand, within IAI47_00765 at 162.697 kb on + strand, within IAI47_00765 at 162.697 kb on + strand, within IAI47_00765 at 162.697 kb on + strand, within IAI47_00765 at 162.697 kb on + strand, within IAI47_00765 at 162.697 kb on + strand, within IAI47_00765 at 162.697 kb on + strand, within IAI47_00765 at 162.697 kb on + strand, within IAI47_00765 at 162.697 kb on + strand, within IAI47_00765 at 162.698 kb on - strand, within IAI47_00765 at 162.698 kb on - strand, within IAI47_00765 at 162.698 kb on - strand, within IAI47_00765 at 162.698 kb on - strand, within IAI47_00765 at 162.751 kb on + strand, within IAI47_00765 at 162.751 kb on + strand, within IAI47_00765 at 162.751 kb on + strand, within IAI47_00765 at 162.751 kb on + strand, within IAI47_00765 at 162.751 kb on + strand, within IAI47_00765 at 162.752 kb on - strand, within IAI47_00765 at 162.752 kb on - strand, within IAI47_00765 at 162.752 kb on - strand, within IAI47_00765 at 162.752 kb on - strand, within IAI47_00765 at 162.752 kb on - strand, within IAI47_00765 at 162.752 kb on - strand, within IAI47_00765
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 2 remove 159,849 + -0.6 159,849 + -0.8 159,849 + -2.1 159,849 + -0.9 159,850 - +0.1 159,904 + -0.5 159,904 + -0.3 159,904 + -0.4 159,904 + -0.9 159,904 + -0.5 159,905 - +0.0 159,905 - +1.5 159,905 - +0.7 159,905 - +0.1 159,928 + -1.2 159,952 + IAI47_00750 0.10 +0.5 159,953 - IAI47_00750 0.11 +3.4 159,953 - IAI47_00750 0.11 +0.3 159,953 - IAI47_00750 0.11 +1.4 159,966 + IAI47_00750 0.13 +0.2 159,966 + IAI47_00750 0.13 -0.1 159,966 + IAI47_00750 0.13 -0.2 159,987 - IAI47_00750 0.18 +1.3 160,090 + IAI47_00750 0.39 -0.0 160,091 - IAI47_00750 0.40 +0.2 160,105 + IAI47_00750 0.43 +3.1 160,189 + IAI47_00750 0.60 +0.8 160,189 + IAI47_00750 0.60 -0.1 160,190 - IAI47_00750 0.61 -0.3 160,190 - IAI47_00750 0.61 -0.1 160,190 - IAI47_00750 0.61 -0.3 160,190 - IAI47_00750 0.61 -1.2 160,226 - IAI47_00750 0.68 -0.0 160,245 + IAI47_00750 0.72 +0.4 160,246 - IAI47_00750 0.72 -0.1 160,246 - IAI47_00750 0.72 -0.4 160,246 - IAI47_00750 0.72 -0.0 160,325 + IAI47_00750 0.89 +0.8 160,325 + IAI47_00750 0.89 +0.3 160,325 + IAI47_00750 0.89 +0.7 160,325 + IAI47_00750 0.89 +0.9 160,325 + IAI47_00750 0.89 -0.6 160,325 + IAI47_00750 0.89 +0.2 160,325 + IAI47_00750 0.89 -1.3 160,326 - IAI47_00750 0.89 +0.3 160,326 - IAI47_00750 0.89 +0.8 160,326 - IAI47_00750 0.89 +0.0 160,326 - IAI47_00750 0.89 -0.0 160,326 - IAI47_00750 0.89 -1.0 160,326 - IAI47_00750 0.89 -1.6 160,326 - IAI47_00750 0.89 -0.6 160,334 + +0.2 160,370 + -0.2 160,370 + +1.2 160,370 + -0.6 160,370 + +0.1 160,370 + -0.8 160,370 + -0.0 160,371 - -1.2 160,371 - -0.6 160,371 - +0.1 160,376 + +0.5 160,376 + +3.4 160,376 + +0.8 160,376 + -1.0 160,377 - -0.2 160,377 - -0.2 160,377 - +0.1 160,377 - +0.5 160,377 - +0.2 160,406 - -0.1 160,406 - -0.2 160,406 - -0.6 160,414 - -0.8 160,431 + -0.4 160,431 + +1.8 160,431 + +0.7 160,466 + -1.2 160,486 + +0.4 160,486 + +0.8 160,487 - -0.2 160,582 - IAI47_00755 0.12 -2.4 160,663 + IAI47_00755 0.18 +0.8 160,664 - IAI47_00755 0.18 -1.3 160,701 + IAI47_00755 0.21 -0.8 160,723 + IAI47_00755 0.23 -0.6 160,723 + IAI47_00755 0.23 +0.8 160,724 - IAI47_00755 0.23 -0.5 160,761 + IAI47_00755 0.25 +1.2 160,761 + IAI47_00755 0.25 -0.3 160,762 - IAI47_00755 0.25 -0.8 160,762 - IAI47_00755 0.25 +0.5 160,858 + IAI47_00755 0.32 -1.5 160,894 + IAI47_00755 0.35 -1.3 160,895 - IAI47_00755 0.35 +0.0 160,895 - IAI47_00755 0.35 -0.9 160,927 + IAI47_00755 0.37 -0.3 160,978 + IAI47_00755 0.41 -1.5 160,978 + IAI47_00755 0.41 +0.8 160,979 - IAI47_00755 0.41 -1.6 161,056 + IAI47_00755 0.47 +0.2 161,057 - IAI47_00755 0.47 -0.8 161,116 + IAI47_00755 0.51 -3.6 161,116 + IAI47_00755 0.51 +0.1 161,116 + IAI47_00755 0.51 -0.1 161,117 - IAI47_00755 0.51 -1.2 161,177 + IAI47_00755 0.55 +0.8 161,177 + IAI47_00755 0.55 -2.2 161,177 + IAI47_00755 0.55 -0.2 161,177 + IAI47_00755 0.55 +0.8 161,177 + IAI47_00755 0.55 -0.2 161,177 + IAI47_00755 0.55 +0.5 161,208 + IAI47_00755 0.58 -0.6 161,209 - IAI47_00755 0.58 +0.2 161,209 - IAI47_00755 0.58 -2.2 161,209 - IAI47_00755 0.58 +0.8 161,218 + IAI47_00755 0.58 +0.8 161,219 - IAI47_00755 0.58 +1.2 161,219 - IAI47_00755 0.58 -0.6 161,219 - IAI47_00755 0.58 -1.2 161,219 - IAI47_00755 0.58 +1.4 161,219 - IAI47_00755 0.58 -1.4 161,287 + IAI47_00755 0.63 +0.2 161,341 + IAI47_00755 0.67 -1.1 161,341 + IAI47_00755 0.67 -0.9 161,341 + IAI47_00755 0.67 -1.0 161,341 + IAI47_00755 0.67 -1.3 161,342 - IAI47_00755 0.67 -2.0 161,342 - IAI47_00755 0.67 -2.5 161,342 - IAI47_00755 0.67 -2.8 161,342 - IAI47_00755 0.67 -0.8 161,361 + IAI47_00755 0.69 -1.8 161,361 + IAI47_00755 0.69 +1.4 161,361 + IAI47_00755 0.69 -0.3 161,361 + IAI47_00755 0.69 -0.8 161,361 + IAI47_00755 0.69 -0.8 161,361 + IAI47_00755 0.69 +0.3 161,361 + IAI47_00755 0.69 -0.3 161,361 + IAI47_00755 0.69 -1.0 161,362 - IAI47_00755 0.69 -1.5 161,362 - IAI47_00755 0.69 -2.1 161,362 - IAI47_00755 0.69 -2.0 161,362 - IAI47_00755 0.69 -2.3 161,362 - IAI47_00755 0.69 -0.5 161,362 - IAI47_00755 0.69 -1.6 161,362 - IAI47_00755 0.69 -1.3 161,362 - IAI47_00755 0.69 -0.2 161,370 + IAI47_00755 0.69 +0.2 161,371 - IAI47_00755 0.69 -2.8 161,374 + IAI47_00755 0.70 -1.3 161,375 - IAI47_00755 0.70 -0.6 161,375 - IAI47_00755 0.70 -1.8 161,375 - IAI47_00755 0.70 -0.8 161,375 - IAI47_00755 0.70 -1.0 161,375 - IAI47_00755 0.70 +0.8 161,375 - IAI47_00755 0.70 -1.8 161,375 - IAI47_00755 0.70 -0.2 161,375 - IAI47_00755 0.70 -1.2 161,375 - IAI47_00755 0.70 -1.5 161,406 - IAI47_00755 0.72 -2.2 161,424 + IAI47_00755 0.73 +0.5 161,424 + IAI47_00755 0.73 -0.8 161,424 + IAI47_00755 0.73 +0.0 161,424 + IAI47_00755 0.73 -0.2 161,425 - IAI47_00755 0.73 -0.8 161,425 - IAI47_00755 0.73 -2.0 161,494 + IAI47_00755 0.78 -1.2 161,494 + IAI47_00755 0.78 +0.1 161,495 - IAI47_00755 0.78 -0.5 161,495 - IAI47_00755 0.78 -3.0 161,495 - IAI47_00755 0.78 -0.8 161,495 - IAI47_00755 0.78 -2.3 161,495 - -1.8 161,495 - IAI47_00755 0.78 +0.8 161,528 + IAI47_00755 0.81 -0.9 161,528 + IAI47_00755 0.81 -0.6 161,529 - IAI47_00755 0.81 +0.2 161,531 + IAI47_00755 0.81 +0.2 161,531 + IAI47_00755 0.81 +0.2 161,531 + IAI47_00755 0.81 -0.2 161,531 + IAI47_00755 0.81 -2.8 161,531 + IAI47_00755 0.81 +0.5 161,532 - IAI47_00755 0.81 -1.8 161,532 - IAI47_00755 0.81 -1.0 161,532 - IAI47_00755 0.81 -1.8 161,767 + -1.0 161,767 + -0.8 161,767 + -1.0 161,768 - +0.1 161,825 - -0.6 161,887 - IAI47_00760 0.14 +2.6 161,887 - IAI47_00760 0.14 +0.5 161,887 - IAI47_00760 0.14 +2.3 161,887 - IAI47_00760 0.14 +0.6 161,893 - IAI47_00760 0.15 -0.9 161,991 - IAI47_00760 0.29 +0.1 162,027 + IAI47_00760 0.34 -0.4 162,195 - IAI47_00760 0.58 -0.2 162,195 - IAI47_00760 0.58 +0.4 162,195 - IAI47_00760 0.58 -0.9 162,195 - IAI47_00760 0.58 -0.7 162,477 + +0.8 162,528 + +0.8 162,528 + +0.1 162,529 - -0.6 162,529 - +1.2 162,529 - +0.4 162,540 + -1.3 162,540 + -2.1 162,585 - +0.4 162,626 + -0.2 162,626 + -0.7 162,626 + -0.5 162,627 - -0.2 162,628 + +1.1 162,628 + +0.9 162,628 + +0.7 162,628 + +0.8 162,628 + -2.5 162,628 + -0.5 162,629 - +1.6 162,629 - +2.0 162,629 - +1.5 162,629 - +0.5 162,697 + IAI47_00765 0.13 -0.8 162,697 + IAI47_00765 0.13 +0.6 162,697 + IAI47_00765 0.13 -0.0 162,697 + IAI47_00765 0.13 -0.8 162,697 + IAI47_00765 0.13 -0.6 162,697 + IAI47_00765 0.13 +1.8 162,697 + IAI47_00765 0.13 +0.1 162,697 + IAI47_00765 0.13 +0.8 162,697 + IAI47_00765 0.13 -1.3 162,698 - IAI47_00765 0.13 +0.1 162,698 - IAI47_00765 0.13 +0.8 162,698 - IAI47_00765 0.13 -1.3 162,698 - IAI47_00765 0.13 -0.6 162,751 + IAI47_00765 0.23 -0.8 162,751 + IAI47_00765 0.23 +0.5 162,751 + IAI47_00765 0.23 +0.0 162,751 + IAI47_00765 0.23 +0.7 162,751 + IAI47_00765 0.23 -0.2 162,752 - IAI47_00765 0.24 +1.1 162,752 - IAI47_00765 0.24 +1.8 162,752 - IAI47_00765 0.24 -0.5 162,752 - IAI47_00765 0.24 +1.2 162,752 - IAI47_00765 0.24 +0.8 162,752 - IAI47_00765 0.24 -0.6
Or see this region's nucleotide sequence