Strain Fitness in Pantoea sp. MT58 around IAI47_00465

Experiment: Ying_AminoAcid20 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 2
104,020	-		IAI47_00460	0.65	+0.8
104,261	-		IAI47_00460	0.82	+0.8
104,417	-				-2.0
104,417	-				+0.8
104,432	-				-0.2
104,432	-				-0.2
104,513	-				-1.2
104,513	-				+0.8
104,513	-				-0.2
104,543	-				-2.3
104,543	-				-1.2
104,546	+				-0.8
104,546	+				-1.9
104,547	-				-1.8
104,547	-				+0.8
104,547	-				+0.2
104,547	-				-0.2
104,547	-				+0.3
104,547	-				-2.6
104,547	-				-1.4
104,547	-				+0.4
104,547	-				+0.8
104,547	-				+0.1
104,547	-				-0.8
104,547	-				-2.3
104,646	+				-0.8
104,646	+				-0.2
104,646	+				-1.2
104,647	-				+0.5
104,657	+				-1.3
104,658	-				-0.9
104,658	-				+0.1
104,697	+				-1.0
104,727	+				-2.3
104,727	+				+0.3
104,727	+				-1.0
104,727	+				+0.4
104,728	-				+1.0
104,728	-				+0.0
104,760	+				-2.5
104,761	-				-0.6
104,761	-				-1.8
104,761	-				-2.0
104,761	-				+0.1
104,761	-				+0.8
104,773	+				-1.0
104,773	+				-1.2
104,774	-				+0.3
104,774	-				-0.6
104,804	+				-1.8
104,804	+				-0.8
104,805	-				+0.7
104,815	+				+0.8
104,815	+				-0.8
104,816	-				+0.7
104,816	-				+1.4
104,816	-				-0.1
104,816	-				-0.5
104,816	-				-0.8
104,816	-				+0.7
104,816	-				-1.0
104,855	+				-1.2
104,855	+				+0.8
104,855	+				+0.4
104,855	+				-0.5
104,855	+				-0.2
104,855	+				+0.2
104,855	+				+0.1
104,855	+				+0.3
104,856	-				-1.1
104,856	-				+1.2
104,856	-				+0.4
104,859	+				-0.4
104,859	+				+0.5
104,859	+				+0.2
104,859	+				+1.1
104,860	-				+0.1
104,860	-				-0.2
104,860	-				+0.8
104,860	-				-1.8
104,860	-				-0.3
104,863	-				-0.8
104,913	+				+1.8
104,913	+				+0.4
104,913	+				+0.7
104,914	-				-2.3
104,914	-				+0.4
104,918	+				-0.2
104,919	-				-1.2
104,926	+				+0.3
104,932	+				+0.0
104,932	+				+0.1
104,968	+				-1.2
105,139	+		IAI47_00465	0.10	-0.8
105,140	-		IAI47_00465	0.10	-2.0
105,140	-		IAI47_00465	0.10	-2.5
105,173	-		IAI47_00465	0.12	-1.2
105,265	+		IAI47_00465	0.17	+2.4
105,266	-		IAI47_00465	0.17	+0.2
105,339	+		IAI47_00465	0.21	+1.4
105,339	+		IAI47_00465	0.21	-0.8
105,340	-		IAI47_00465	0.21	-1.5
105,382	-		IAI47_00465	0.24	-0.8
105,382	-		IAI47_00465	0.24	+0.8
105,460	+		IAI47_00465	0.28	+0.2
105,496	+				-0.2
105,497	-				-1.5
105,509	+		IAI47_00465	0.31	-0.8
105,591	-		IAI47_00465	0.35	-0.8
105,591	-		IAI47_00465	0.35	+0.8
105,599	+		IAI47_00465	0.36	-0.2
105,600	-		IAI47_00465	0.36	-1.8
105,600	-		IAI47_00465	0.36	-0.8
105,644	-		IAI47_00465	0.38	-1.8
105,697	+		IAI47_00465	0.41	-0.8
105,698	+		IAI47_00465	0.41	-0.2
105,775	+		IAI47_00465	0.45	+0.2
105,919	+		IAI47_00465	0.53	+0.8
105,919	+		IAI47_00465	0.53	-1.2
105,919	+		IAI47_00465	0.53	+1.4
105,920	-		IAI47_00465	0.53	-0.5
105,920	-		IAI47_00465	0.53	-0.2
105,920	-				-1.0
105,923	+		IAI47_00465	0.53	-3.0
105,924	-		IAI47_00465	0.53	-0.8
105,924	-		IAI47_00465	0.53	-0.2
106,159	+		IAI47_00465	0.66	-0.2
106,159	+		IAI47_00465	0.66	-2.0
106,159	+		IAI47_00465	0.66	-0.8
106,271	+				-1.5
106,352	-				-0.5
106,352	-		IAI47_00465	0.77	-1.8
106,364	+		IAI47_00465	0.77	+0.8
106,475	-				+1.7
106,504	+		IAI47_00465	0.85	-2.3
106,540	+				+0.8
106,554	+		IAI47_00465	0.88	-2.2
106,554	+		IAI47_00465	0.88	-0.8
106,555	-		IAI47_00465	0.88	-1.0
106,570	+		IAI47_00465	0.89	+0.4
106,600	+				-1.2
106,623	+				-1.2
106,714	+				-1.0
106,741	+				-2.2
106,742	-				-0.2
106,742	-				-2.9
106,762	+				-0.2
106,762	+				+0.2
106,772	+				-1.2
106,772	+				-0.8
106,772	+				-0.0
106,772	+				-0.8
106,772	+				-0.4
106,773	-				-0.6
106,773	-				+0.0
106,784	+				-0.1
106,784	+				+1.1
106,785	-				-1.6
106,785	-				-0.6
106,792	-				+0.8
106,792	-				+0.0
106,837	+				-0.9
106,837	+				-1.2
106,838	-				-1.5
106,838	-				+1.8
106,838	-				+1.1
106,838	-				+0.8
106,857	+				+0.3
106,858	-				-1.3
106,883	-				+0.2
106,883	-				-0.2
106,883	-				+0.2
106,901	-				-0.2
106,947	+				+1.4
106,948	-				-0.2
106,954	-				+0.4
106,956	+				-0.2
106,957	-				+0.4
106,957	-				-0.8
106,957	-				+0.8
106,990	+				-0.8
106,990	+				-0.6
106,990	+				-0.8
106,990	+				+0.3
106,990	+				-1.2
106,990	+				+1.1
106,990	+				-0.3
106,990	+				+0.2
106,990	+				+1.1
106,990	+				-2.3
106,990	+				+0.4
106,991	-				+0.2
106,991	-				-0.3
106,991	-				+0.0
106,991	-				+0.2
106,991	-				-0.8
106,991	-				+0.2
106,991	-				+1.0
106,991	-				+0.6
106,991	-				+1.2
106,991	-				-0.8
106,991	-				-2.3
106,991	-				+0.2
106,991	-				-0.5
106,992	+				-0.4
106,992	+				-0.0
106,992	+				+0.3
106,992	+				+0.8
106,992	+				+0.1
106,993	-				+1.8
106,993	-				-2.0
106,993	-				-0.8
106,993	-				-0.2
106,993	-				-0.8
106,993	-				-0.9
107,016	+				-0.2
107,016	+				-1.8
107,016	+				-0.2
107,016	+				-0.2
107,017	-				-1.6
107,017	-				-0.0
107,061	+		IAI47_00470	0.13	+2.6
107,062	-		IAI47_00470	0.13	-0.4
107,062	-		IAI47_00470	0.13	-0.5
107,070	-		IAI47_00470	0.14	-0.3
107,084	+		IAI47_00470	0.17	+1.0
107,084	+		IAI47_00470	0.17	+0.8
107,084	+		IAI47_00470	0.17	-0.9
107,084	+		IAI47_00470	0.17	-1.1
107,085	-		IAI47_00470	0.17	-2.3
107,085	-		IAI47_00470	0.17	+1.7
107,194	+		IAI47_00470	0.35	+0.6
107,194	+		IAI47_00470	0.35	+0.3
107,194	+		IAI47_00470	0.35	-0.6
107,194	+		IAI47_00470	0.35	+0.2
107,194	+		IAI47_00470	0.35	-0.7
107,194	+		IAI47_00470	0.35	-0.5
107,194	+		IAI47_00470	0.35	-1.2
107,194	+		IAI47_00470	0.35	+0.2
107,195	-		IAI47_00470	0.35	+0.8
107,195	-		IAI47_00470	0.35	+0.3
107,195	-		IAI47_00470	0.35	-0.6
107,195	-		IAI47_00470	0.35	+0.8
107,195	-		IAI47_00470	0.35	+1.2
107,259	-		IAI47_00470	0.46	+0.0
107,259	-		IAI47_00470	0.46	+1.8
107,294	+		IAI47_00470	0.52	+0.0
107,294	+		IAI47_00470	0.52	-1.0
107,294	+		IAI47_00470	0.52	+0.8
107,294	+		IAI47_00470	0.52	-0.2
107,294	+		IAI47_00470	0.52	+0.5
107,295	-		IAI47_00470	0.52	-0.3
107,295	-		IAI47_00470	0.52	+0.2
107,305	-		IAI47_00470	0.54	+0.2
107,305	-		IAI47_00470	0.54	+2.6
107,318	+		IAI47_00470	0.56	+0.3
107,318	+		IAI47_00470	0.56	-0.9
107,318	+		IAI47_00470	0.56	+1.2
107,318	+		IAI47_00470	0.56	-0.4
107,318	+		IAI47_00470	0.56	-0.5
107,318	+		IAI47_00470	0.56	+0.2
107,318	+		IAI47_00470	0.56	-1.5
107,318	+		IAI47_00470	0.56	-0.4
107,318	+		IAI47_00470	0.56	-2.1
107,318	+		IAI47_00470	0.56	+1.4
107,319	-		IAI47_00470	0.56	+0.4
107,319	-		IAI47_00470	0.56	-0.2
107,319	-		IAI47_00470	0.56	-1.3
107,319	-		IAI47_00470	0.56	-0.2
107,319	-		IAI47_00470	0.56	-0.5
107,319	-		IAI47_00470	0.56	-0.2
107,319	-		IAI47_00470	0.56	-0.5
107,319	-		IAI47_00470	0.56	+0.1
107,319	-		IAI47_00470	0.56	-1.3
107,319	-		IAI47_00470	0.56	+0.2
107,370	+		IAI47_00470	0.65	+0.0
107,371	-		IAI47_00470	0.65	+0.5
107,378	-		IAI47_00470	0.66	+0.8
107,393	+		IAI47_00470	0.69	+0.7
107,393	+		IAI47_00470	0.69	+0.4
107,393	+		IAI47_00470	0.69	+2.0
107,393	+		IAI47_00470	0.69	+0.3
107,393	+		IAI47_00470	0.69	-0.0
107,393	+		IAI47_00470	0.69	-0.9
107,393	+		IAI47_00470	0.69	-1.1
107,393	+		IAI47_00470	0.69	+0.8
107,393	+		IAI47_00470	0.69	+1.0
107,393	+		IAI47_00470	0.69	+0.7
107,394	-		IAI47_00470	0.69	-0.2
107,394	-		IAI47_00470	0.69	-1.2
107,394	-		IAI47_00470	0.69	+1.0
107,394	-		IAI47_00470	0.69	-0.4
107,394	-		IAI47_00470	0.69	+0.1
107,394	-		IAI47_00470	0.69	-0.0
107,394	-		IAI47_00470	0.69	-0.6
107,394	-		IAI47_00470	0.69	+0.3
107,394	-		IAI47_00470	0.69	+0.6
107,394	-		IAI47_00470	0.69	-2.6
107,394	-		IAI47_00470	0.69	+0.6
107,394	-		IAI47_00470	0.69	+0.1
107,397	+		IAI47_00470	0.69	-0.6
107,397	+		IAI47_00470	0.69	+0.1
107,397	+		IAI47_00470	0.69	+0.8
107,397	+		IAI47_00470	0.69	-0.2
107,397	+		IAI47_00470	0.69	+1.3
107,397	+		IAI47_00470	0.69	+2.4
107,397	+		IAI47_00470	0.69	-0.3
107,397	+		IAI47_00470	0.69	+0.3
107,398	-		IAI47_00470	0.69	+0.8
107,398	-		IAI47_00470	0.69	+1.0
107,398	-		IAI47_00470	0.69	-0.0
107,398	-		IAI47_00470	0.69	+1.4
107,398	-		IAI47_00470	0.69	+0.8
107,398	-		IAI47_00470	0.69	+0.2
107,398	-		IAI47_00470	0.69	-0.3
107,398	-		IAI47_00470	0.69	+1.4
107,422	+		IAI47_00470	0.73	+0.5
107,481	+		IAI47_00470	0.83	+0.2
107,481	+		IAI47_00470	0.83	+0.1
107,481	+		IAI47_00470	0.83	-0.7
107,482	-		IAI47_00470	0.83	-0.8
107,482	-		IAI47_00470	0.83	+0.4
107,528	+				-0.2
107,528	+				+0.6
107,529	-				+0.1
107,529	-				+0.2
107,535	+				-0.2
107,544	+				-0.9
107,545	-				-0.2
107,545	-				-0.0
107,573	+				+0.2
107,573	+				+0.9
107,573	+				-0.0
107,573	+				-0.5
107,574	-				+0.3
107,574	-				+1.4
107,578	+				+0.1
107,578	+				+1.3
107,578	+				+0.7
107,578	+				-0.3
107,578	+				+1.6
107,578	+				-0.0
107,578	+				+0.5
107,579	-				-0.5
107,579	-				-1.7
107,579	-				+0.0
107,579	-				-0.2
107,579	-				+0.0
107,642	+				-1.3
107,686	-		IAI47_00475	0.12	-1.0
107,695	+		IAI47_00475	0.13	-0.2
107,695	+		IAI47_00475	0.13	+0.4
107,695	+		IAI47_00475	0.13	+0.2
107,695	+		IAI47_00475	0.13	-1.8
107,695	+		IAI47_00475	0.13	-0.6
107,695	+		IAI47_00475	0.13	-0.6
107,695	+		IAI47_00475	0.13	+0.2
107,695	+		IAI47_00475	0.13	-0.1
107,696	-		IAI47_00475	0.13	+0.8
107,696	-		IAI47_00475	0.13	-0.1
107,696	-		IAI47_00475	0.13	+0.8
107,696	-		IAI47_00475	0.13	-1.3
107,696	-		IAI47_00475	0.13	-0.6
107,696	-		IAI47_00475	0.13	+0.0
107,696	-		IAI47_00475	0.13	+0.4
107,696	-		IAI47_00475	0.13	+1.0
107,696	-		IAI47_00475	0.13	-0.8
107,696	-		IAI47_00475	0.13	-0.5
107,696	-		IAI47_00475	0.13	-1.0
107,696	-		IAI47_00475	0.13	-0.3
107,724	+		IAI47_00475	0.16	+1.4
107,725	-		IAI47_00475	0.16	+0.0
107,725	-		IAI47_00475	0.16	+1.6