Experiment: Ying_AminoAcid20 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_00455 and IAI47_00460 are separated by 138 nucleotides IAI47_00460 and IAI47_00465 are separated by 438 nucleotides
IAI47_00455: IAI47_00455 - nitrogen regulation protein NR(II), at 101,915 to 102,964
_00455
IAI47_00460: IAI47_00460 - glutamate--ammonia ligase, at 103,103 to 104,512
_00460
IAI47_00465: IAI47_00465 - ribosome-dependent GTPase TypA, at 104,951 to 106,774
_00465
Position (kb) 103
104
105 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 102.118 kb on + strand, within IAI47_00455 at 102.118 kb on + strand, within IAI47_00455 at 102.119 kb on - strand, within IAI47_00455 at 102.119 kb on - strand, within IAI47_00455 at 102.119 kb on - strand, within IAI47_00455 at 102.119 kb on - strand, within IAI47_00455 at 102.119 kb on - strand, within IAI47_00455 at 102.125 kb on + strand, within IAI47_00455 at 102.125 kb on + strand, within IAI47_00455 at 102.235 kb on + strand, within IAI47_00455 at 102.242 kb on + strand, within IAI47_00455 at 102.242 kb on + strand, within IAI47_00455 at 102.242 kb on + strand, within IAI47_00455 at 102.294 kb on + strand, within IAI47_00455 at 102.343 kb on + strand, within IAI47_00455 at 102.343 kb on + strand, within IAI47_00455 at 102.343 kb on + strand, within IAI47_00455 at 102.343 kb on + strand, within IAI47_00455 at 102.343 kb on + strand, within IAI47_00455 at 102.347 kb on + strand, within IAI47_00455 at 102.347 kb on + strand, within IAI47_00455 at 102.347 kb on + strand, within IAI47_00455 at 102.407 kb on + strand, within IAI47_00455 at 102.451 kb on + strand, within IAI47_00455 at 102.451 kb on + strand, within IAI47_00455 at 102.465 kb on + strand, within IAI47_00455 at 102.466 kb on - strand, within IAI47_00455 at 102.466 kb on - strand, within IAI47_00455 at 102.466 kb on - strand, within IAI47_00455 at 102.501 kb on - strand, within IAI47_00455 at 102.541 kb on + strand, within IAI47_00455 at 102.541 kb on + strand, within IAI47_00455 at 102.541 kb on + strand, within IAI47_00455 at 102.599 kb on + strand, within IAI47_00455 at 102.599 kb on + strand, within IAI47_00455 at 102.599 kb on + strand, within IAI47_00455 at 102.628 kb on + strand, within IAI47_00455 at 102.629 kb on - strand, within IAI47_00455 at 102.656 kb on + strand, within IAI47_00455 at 102.656 kb on + strand, within IAI47_00455 at 102.657 kb on - strand, within IAI47_00455 at 102.657 kb on - strand, within IAI47_00455 at 102.691 kb on + strand, within IAI47_00455 at 102.691 kb on + strand, within IAI47_00455 at 102.691 kb on + strand, within IAI47_00455 at 102.691 kb on + strand, within IAI47_00455 at 102.691 kb on + strand, within IAI47_00455 at 102.691 kb on + strand, within IAI47_00455 at 102.691 kb on + strand, within IAI47_00455 at 102.691 kb on + strand, within IAI47_00455 at 102.691 kb on + strand, within IAI47_00455 at 102.692 kb on - strand, within IAI47_00455 at 102.692 kb on - strand, within IAI47_00455 at 102.692 kb on - strand, within IAI47_00455 at 102.692 kb on - strand, within IAI47_00455 at 102.692 kb on - strand, within IAI47_00455 at 102.692 kb on - strand, within IAI47_00455 at 102.721 kb on + strand, within IAI47_00455 at 102.721 kb on + strand, within IAI47_00455 at 102.722 kb on - strand, within IAI47_00455 at 102.778 kb on + strand, within IAI47_00455 at 102.778 kb on + strand, within IAI47_00455 at 102.779 kb on - strand, within IAI47_00455 at 102.779 kb on - strand, within IAI47_00455 at 102.800 kb on + strand, within IAI47_00455 at 102.801 kb on - strand, within IAI47_00455 at 102.848 kb on + strand, within IAI47_00455 at 102.874 kb on - strand at 102.907 kb on + strand at 102.907 kb on + strand at 102.907 kb on + strand at 102.907 kb on + strand at 102.907 kb on + strand at 102.908 kb on - strand at 102.908 kb on - strand at 102.917 kb on + strand at 102.917 kb on + strand at 102.917 kb on + strand at 102.918 kb on - strand at 102.964 kb on + strand at 102.964 kb on + strand at 102.965 kb on - strand at 102.971 kb on + strand at 102.971 kb on + strand at 102.972 kb on - strand at 102.997 kb on + strand at 103.003 kb on + strand at 103.003 kb on + strand at 103.003 kb on + strand at 103.003 kb on + strand at 103.003 kb on + strand at 103.003 kb on + strand at 103.003 kb on + strand at 103.031 kb on + strand at 103.032 kb on - strand at 103.069 kb on - strand at 103.104 kb on + strand at 103.104 kb on + strand at 103.510 kb on - strand, within IAI47_00460 at 103.651 kb on - strand, within IAI47_00460 at 103.697 kb on - strand, within IAI47_00460 at 103.745 kb on - strand, within IAI47_00460 at 103.798 kb on - strand, within IAI47_00460 at 104.020 kb on - strand, within IAI47_00460 at 104.261 kb on - strand, within IAI47_00460 at 104.417 kb on - strand at 104.417 kb on - strand at 104.432 kb on - strand at 104.432 kb on - strand at 104.513 kb on - strand at 104.513 kb on - strand at 104.513 kb on - strand at 104.543 kb on - strand at 104.543 kb on - strand at 104.546 kb on + strand at 104.546 kb on + strand at 104.547 kb on - strand at 104.547 kb on - strand at 104.547 kb on - strand at 104.547 kb on - strand at 104.547 kb on - strand at 104.547 kb on - strand at 104.547 kb on - strand at 104.547 kb on - strand at 104.547 kb on - strand at 104.547 kb on - strand at 104.547 kb on - strand at 104.547 kb on - strand at 104.646 kb on + strand at 104.646 kb on + strand at 104.646 kb on + strand at 104.647 kb on - strand at 104.657 kb on + strand at 104.658 kb on - strand at 104.658 kb on - strand at 104.697 kb on + strand at 104.727 kb on + strand at 104.727 kb on + strand at 104.727 kb on + strand at 104.727 kb on + strand at 104.728 kb on - strand at 104.728 kb on - strand at 104.760 kb on + strand at 104.761 kb on - strand at 104.761 kb on - strand at 104.761 kb on - strand at 104.761 kb on - strand at 104.761 kb on - strand at 104.773 kb on + strand at 104.773 kb on + strand at 104.774 kb on - strand at 104.774 kb on - strand at 104.804 kb on + strand at 104.804 kb on + strand at 104.805 kb on - strand at 104.815 kb on + strand at 104.815 kb on + strand at 104.816 kb on - strand at 104.816 kb on - strand at 104.816 kb on - strand at 104.816 kb on - strand at 104.816 kb on - strand at 104.816 kb on - strand at 104.816 kb on - strand at 104.855 kb on + strand at 104.855 kb on + strand at 104.855 kb on + strand at 104.855 kb on + strand at 104.855 kb on + strand at 104.855 kb on + strand at 104.855 kb on + strand at 104.855 kb on + strand at 104.856 kb on - strand at 104.856 kb on - strand at 104.856 kb on - strand at 104.859 kb on + strand at 104.859 kb on + strand at 104.859 kb on + strand at 104.859 kb on + strand at 104.860 kb on - strand at 104.860 kb on - strand at 104.860 kb on - strand at 104.860 kb on - strand at 104.860 kb on - strand at 104.863 kb on - strand at 104.913 kb on + strand at 104.913 kb on + strand at 104.913 kb on + strand at 104.914 kb on - strand at 104.914 kb on - strand at 104.918 kb on + strand at 104.919 kb on - strand at 104.926 kb on + strand at 104.932 kb on + strand at 104.932 kb on + strand at 104.968 kb on + strand at 105.139 kb on + strand, within IAI47_00465 at 105.140 kb on - strand, within IAI47_00465 at 105.140 kb on - strand, within IAI47_00465 at 105.173 kb on - strand, within IAI47_00465 at 105.265 kb on + strand, within IAI47_00465 at 105.266 kb on - strand, within IAI47_00465 at 105.339 kb on + strand, within IAI47_00465 at 105.339 kb on + strand, within IAI47_00465 at 105.340 kb on - strand, within IAI47_00465 at 105.382 kb on - strand, within IAI47_00465 at 105.382 kb on - strand, within IAI47_00465 at 105.460 kb on + strand, within IAI47_00465 at 105.496 kb on + strand at 105.497 kb on - strand at 105.509 kb on + strand, within IAI47_00465
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 2 remove 102,118 + IAI47_00455 0.19 +1.0 102,118 + IAI47_00455 0.19 +0.6 102,119 - IAI47_00455 0.19 -1.8 102,119 - IAI47_00455 0.19 +0.8 102,119 - IAI47_00455 0.19 -0.8 102,119 - IAI47_00455 0.19 -1.0 102,119 - IAI47_00455 0.19 -1.2 102,125 + IAI47_00455 0.20 -0.2 102,125 + IAI47_00455 0.20 -0.2 102,235 + IAI47_00455 0.30 +0.8 102,242 + IAI47_00455 0.31 -2.5 102,242 + IAI47_00455 0.31 -1.3 102,242 + IAI47_00455 0.31 +0.5 102,294 + IAI47_00455 0.36 -0.2 102,343 + IAI47_00455 0.41 -0.3 102,343 + IAI47_00455 0.41 +1.1 102,343 + IAI47_00455 0.41 +0.8 102,343 + IAI47_00455 0.41 -1.2 102,343 + IAI47_00455 0.41 -0.3 102,347 + IAI47_00455 0.41 +0.8 102,347 + IAI47_00455 0.41 -1.4 102,347 + IAI47_00455 0.41 -1.2 102,407 + IAI47_00455 0.47 -1.6 102,451 + IAI47_00455 0.51 +1.0 102,451 + IAI47_00455 0.51 +0.5 102,465 + IAI47_00455 0.52 -0.3 102,466 - IAI47_00455 0.52 -1.2 102,466 - IAI47_00455 0.52 -0.8 102,466 - IAI47_00455 0.52 -1.5 102,501 - IAI47_00455 0.56 -0.6 102,541 + IAI47_00455 0.60 +2.1 102,541 + IAI47_00455 0.60 +2.4 102,541 + IAI47_00455 0.60 -2.5 102,599 + IAI47_00455 0.65 -0.7 102,599 + IAI47_00455 0.65 -0.8 102,599 + IAI47_00455 0.65 -1.0 102,628 + IAI47_00455 0.68 -0.8 102,629 - IAI47_00455 0.68 -0.5 102,656 + IAI47_00455 0.71 +0.8 102,656 + IAI47_00455 0.71 -0.8 102,657 - IAI47_00455 0.71 -3.9 102,657 - IAI47_00455 0.71 -1.0 102,691 + IAI47_00455 0.74 +0.3 102,691 + IAI47_00455 0.74 +0.4 102,691 + IAI47_00455 0.74 +0.2 102,691 + IAI47_00455 0.74 -1.0 102,691 + IAI47_00455 0.74 -2.0 102,691 + IAI47_00455 0.74 +2.8 102,691 + IAI47_00455 0.74 +0.1 102,691 + IAI47_00455 0.74 -2.3 102,691 + IAI47_00455 0.74 +0.2 102,692 - IAI47_00455 0.74 -1.2 102,692 - IAI47_00455 0.74 -0.8 102,692 - IAI47_00455 0.74 -0.8 102,692 - IAI47_00455 0.74 -1.7 102,692 - IAI47_00455 0.74 -0.9 102,692 - IAI47_00455 0.74 -1.3 102,721 + IAI47_00455 0.77 -0.2 102,721 + IAI47_00455 0.77 +0.8 102,722 - IAI47_00455 0.77 -2.2 102,778 + IAI47_00455 0.82 -0.8 102,778 + IAI47_00455 0.82 -0.6 102,779 - IAI47_00455 0.82 -1.9 102,779 - IAI47_00455 0.82 -1.8 102,800 + IAI47_00455 0.84 -0.3 102,801 - IAI47_00455 0.84 -0.8 102,848 + IAI47_00455 0.89 -0.9 102,874 - +0.4 102,907 + -1.0 102,907 + +1.4 102,907 + -0.4 102,907 + -0.4 102,907 + +0.6 102,908 - +0.0 102,908 - +0.0 102,917 + +0.8 102,917 + -0.9 102,917 + -0.5 102,918 - -1.5 102,964 + -1.2 102,964 + +1.1 102,965 - -0.6 102,971 + -0.8 102,971 + -1.2 102,972 - -0.0 102,997 + -0.4 103,003 + +0.8 103,003 + +0.8 103,003 + +0.2 103,003 + -0.0 103,003 + +1.1 103,003 + +0.4 103,003 + -0.1 103,031 + +0.4 103,032 - -0.8 103,069 - -1.2 103,104 + -0.5 103,104 + -0.0 103,510 - IAI47_00460 0.29 -1.5 103,651 - IAI47_00460 0.39 -0.2 103,697 - IAI47_00460 0.42 -1.5 103,745 - IAI47_00460 0.46 -1.5 103,798 - IAI47_00460 0.49 -1.5 104,020 - IAI47_00460 0.65 +0.8 104,261 - IAI47_00460 0.82 +0.8 104,417 - -2.0 104,417 - +0.8 104,432 - -0.2 104,432 - -0.2 104,513 - -1.2 104,513 - +0.8 104,513 - -0.2 104,543 - -2.3 104,543 - -1.2 104,546 + -0.8 104,546 + -1.9 104,547 - -1.8 104,547 - +0.8 104,547 - +0.2 104,547 - -0.2 104,547 - +0.3 104,547 - -2.6 104,547 - -1.4 104,547 - +0.4 104,547 - +0.8 104,547 - +0.1 104,547 - -0.8 104,547 - -2.3 104,646 + -0.8 104,646 + -0.2 104,646 + -1.2 104,647 - +0.5 104,657 + -1.3 104,658 - -0.9 104,658 - +0.1 104,697 + -1.0 104,727 + -2.3 104,727 + +0.3 104,727 + -1.0 104,727 + +0.4 104,728 - +1.0 104,728 - +0.0 104,760 + -2.5 104,761 - -0.6 104,761 - -1.8 104,761 - -2.0 104,761 - +0.1 104,761 - +0.8 104,773 + -1.0 104,773 + -1.2 104,774 - +0.3 104,774 - -0.6 104,804 + -1.8 104,804 + -0.8 104,805 - +0.7 104,815 + +0.8 104,815 + -0.8 104,816 - +0.7 104,816 - +1.4 104,816 - -0.1 104,816 - -0.5 104,816 - -0.8 104,816 - +0.7 104,816 - -1.0 104,855 + -1.2 104,855 + +0.8 104,855 + +0.4 104,855 + -0.5 104,855 + -0.2 104,855 + +0.2 104,855 + +0.1 104,855 + +0.3 104,856 - -1.1 104,856 - +1.2 104,856 - +0.4 104,859 + -0.4 104,859 + +0.5 104,859 + +0.2 104,859 + +1.1 104,860 - +0.1 104,860 - -0.2 104,860 - +0.8 104,860 - -1.8 104,860 - -0.3 104,863 - -0.8 104,913 + +1.8 104,913 + +0.4 104,913 + +0.7 104,914 - -2.3 104,914 - +0.4 104,918 + -0.2 104,919 - -1.2 104,926 + +0.3 104,932 + +0.0 104,932 + +0.1 104,968 + -1.2 105,139 + IAI47_00465 0.10 -0.8 105,140 - IAI47_00465 0.10 -2.0 105,140 - IAI47_00465 0.10 -2.5 105,173 - IAI47_00465 0.12 -1.2 105,265 + IAI47_00465 0.17 +2.4 105,266 - IAI47_00465 0.17 +0.2 105,339 + IAI47_00465 0.21 +1.4 105,339 + IAI47_00465 0.21 -0.8 105,340 - IAI47_00465 0.21 -1.5 105,382 - IAI47_00465 0.24 -0.8 105,382 - IAI47_00465 0.24 +0.8 105,460 + IAI47_00465 0.28 +0.2 105,496 + -0.2 105,497 - -1.5 105,509 + IAI47_00465 0.31 -0.8
Or see this region's nucleotide sequence