Strain Fitness in Pantoea sp. MT58 around IAI47_00395

Experiment: Ying_AminoAcid20 rep B; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_00385 and IAI47_00390 are separated by 82 nucleotidesIAI47_00390 and IAI47_00395 are separated by 221 nucleotidesIAI47_00395 and IAI47_00400 are separated by 77 nucleotidesIAI47_00400 and IAI47_00405 are separated by 85 nucleotidesIAI47_00405 and IAI47_00410 are separated by 1 nucleotides IAI47_00385: IAI47_00385 - 16S ribosomal RNA, at 85,333 to 86,879 _00385 IAI47_00390: IAI47_00390 - tRNA-Glu, at 86,962 to 87,036 _00390 IAI47_00395: IAI47_00395 - 23S ribosomal RNA, at 87,258 to 90,192 _00395 IAI47_00400: IAI47_00400 - 5S ribosomal RNA, at 90,270 to 90,385 _00400 IAI47_00405: IAI47_00405 - molybdopterin-guanine dinucleotide biosynthesis protein B, at 90,471 to 90,977 _00405 IAI47_00410: IAI47_00410 - molybdenum cofactor guanylyltransferase MobA, at 90,979 to 91,545 _00410 Position (kb) 87 88 89 90 91Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 90.430 kb on + strandat 90.430 kb on + strandat 90.464 kb on - strandat 90.512 kb on + strandat 90.513 kb on - strandat 90.513 kb on - strandat 90.513 kb on - strandat 90.525 kb on + strand, within IAI47_00405at 90.525 kb on + strand, within IAI47_00405at 90.526 kb on - strand, within IAI47_00405at 90.526 kb on - strand, within IAI47_00405at 90.526 kb on - strand, within IAI47_00405at 90.631 kb on - strand, within IAI47_00405at 90.641 kb on + strand, within IAI47_00405at 90.642 kb on - strand, within IAI47_00405at 90.645 kb on + strand, within IAI47_00405at 90.645 kb on + strand, within IAI47_00405at 90.659 kb on + strand, within IAI47_00405at 90.660 kb on - strand, within IAI47_00405at 90.660 kb on - strand, within IAI47_00405at 90.660 kb on - strand, within IAI47_00405at 90.676 kb on - strand, within IAI47_00405at 90.676 kb on - strand, within IAI47_00405at 90.676 kb on - strand, within IAI47_00405at 90.676 kb on - strand, within IAI47_00405at 90.676 kb on - strand, within IAI47_00405at 90.701 kb on + strand, within IAI47_00405at 90.701 kb on + strand, within IAI47_00405at 90.702 kb on - strand, within IAI47_00405at 90.715 kb on + strand, within IAI47_00405at 90.715 kb on + strand, within IAI47_00405at 90.715 kb on + strand, within IAI47_00405at 90.715 kb on + strand, within IAI47_00405at 90.715 kb on + strand, within IAI47_00405at 90.716 kb on - strand, within IAI47_00405at 90.716 kb on - strand, within IAI47_00405at 90.716 kb on - strand, within IAI47_00405at 90.716 kb on - strand, within IAI47_00405at 90.716 kb on - strand, within IAI47_00405at 90.716 kb on - strand, within IAI47_00405at 90.716 kb on - strand, within IAI47_00405at 90.716 kb on - strand, within IAI47_00405at 90.817 kb on + strand, within IAI47_00405at 90.817 kb on + strand, within IAI47_00405at 90.817 kb on + strand, within IAI47_00405at 90.817 kb on + strand, within IAI47_00405at 90.817 kb on + strand, within IAI47_00405at 90.817 kb on + strand, within IAI47_00405at 90.817 kb on + strand, within IAI47_00405at 90.817 kb on + strand, within IAI47_00405at 90.817 kb on + strand, within IAI47_00405at 90.817 kb on + strand, within IAI47_00405at 90.817 kb on + strand, within IAI47_00405at 90.817 kb on + strand, within IAI47_00405at 90.818 kb on - strand, within IAI47_00405at 90.818 kb on - strand, within IAI47_00405at 90.818 kb on - strand, within IAI47_00405at 90.818 kb on - strand, within IAI47_00405at 90.818 kb on - strand, within IAI47_00405at 90.818 kb on - strand, within IAI47_00405at 90.818 kb on - strand, within IAI47_00405at 90.818 kb on - strand, within IAI47_00405at 90.821 kb on + strand, within IAI47_00405at 90.821 kb on + strand, within IAI47_00405at 90.821 kb on + strand, within IAI47_00405at 90.821 kb on + strand, within IAI47_00405at 90.821 kb on + strand, within IAI47_00405at 90.821 kb on + strand, within IAI47_00405at 90.821 kb on + strand, within IAI47_00405at 90.821 kb on + strand, within IAI47_00405at 90.821 kb on + strand, within IAI47_00405at 90.822 kb on - strand, within IAI47_00405at 90.822 kb on - strand, within IAI47_00405at 90.822 kb on - strand, within IAI47_00405at 90.822 kb on - strand, within IAI47_00405at 90.822 kb on - strand, within IAI47_00405at 90.822 kb on - strand, within IAI47_00405at 90.822 kb on - strand, within IAI47_00405at 90.822 kb on - strand, within IAI47_00405at 90.822 kb on - strand, within IAI47_00405at 90.822 kb on - strand, within IAI47_00405at 90.822 kb on - strand, within IAI47_00405at 90.822 kb on - strand, within IAI47_00405at 90.827 kb on + strand, within IAI47_00405at 90.827 kb on + strand, within IAI47_00405at 90.828 kb on - strand, within IAI47_00405at 90.866 kb on + strand, within IAI47_00405at 90.866 kb on + strand, within IAI47_00405at 90.866 kb on + strand, within IAI47_00405at 90.866 kb on + strand, within IAI47_00405at 90.866 kb on + strand, within IAI47_00405at 90.866 kb on + strand, within IAI47_00405at 90.867 kb on - strand, within IAI47_00405at 90.867 kb on - strand, within IAI47_00405at 90.890 kb on + strand, within IAI47_00405at 90.890 kb on + strand, within IAI47_00405at 90.918 kb on + strand, within IAI47_00405at 90.918 kb on + strand, within IAI47_00405at 90.932 kb on + strandat 90.933 kb on - strandat 90.963 kb on + strandat 90.963 kb on + strandat 90.963 kb on + strandat 90.963 kb on + strandat 90.963 kb on + strandat 90.963 kb on + strandat 90.964 kb on - strandat 90.964 kb on - strandat 90.964 kb on - strandat 90.970 kb on - strandat 90.977 kb on + strandat 90.977 kb on + strandat 90.977 kb on + strandat 90.977 kb on + strandat 90.977 kb on + strandat 90.977 kb on + strandat 90.977 kb on + strandat 90.977 kb on + strandat 90.977 kb on + strandat 90.977 kb on + strandat 90.977 kb on + strandat 90.977 kb on + strandat 90.977 kb on + strandat 90.977 kb on + strandat 90.977 kb on + strandat 90.977 kb on + strandat 90.977 kb on + strandat 90.978 kb on - strandat 90.978 kb on - strandat 90.978 kb on - strandat 90.978 kb on - strandat 90.978 kb on - strandat 90.978 kb on - strandat 90.978 kb on - strandat 90.978 kb on - strandat 90.978 kb on - strandat 90.978 kb on - strandat 90.978 kb on - strandat 90.978 kb on - strandat 90.978 kb on - strandat 91.008 kb on + strandat 91.008 kb on + strandat 91.008 kb on + strandat 91.008 kb on + strandat 91.008 kb on + strandat 91.009 kb on - strandat 91.011 kb on + strandat 91.011 kb on + strandat 91.011 kb on + strandat 91.012 kb on - strandat 91.012 kb on - strandat 91.012 kb on - strandat 91.012 kb on - strandat 91.012 kb on - strandat 91.012 kb on - strandat 91.012 kb on - strandat 91.012 kb on - strandat 91.012 kb on - strandat 91.012 kb on - strandat 91.012 kb on - strandat 91.014 kb on + strandat 91.015 kb on - strandat 91.015 kb on - strandat 91.015 kb on - strandat 91.015 kb on - strandat 91.015 kb on - strandat 91.048 kb on + strand, within IAI47_00410at 91.048 kb on + strand, within IAI47_00410at 91.048 kb on + strand, within IAI47_00410at 91.049 kb on - strand, within IAI47_00410at 91.083 kb on + strand, within IAI47_00410at 91.083 kb on + strand, within IAI47_00410at 91.083 kb on + strand, within IAI47_00410at 91.083 kb on + strand, within IAI47_00410at 91.084 kb on - strand, within IAI47_00410at 91.084 kb on - strand, within IAI47_00410at 91.084 kb on - strand, within IAI47_00410at 91.084 kb on - strand, within IAI47_00410at 91.084 kb on - strand, within IAI47_00410at 91.084 kb on - strand, within IAI47_00410at 91.084 kb on - strand, within IAI47_00410at 91.084 kb on - strand, within IAI47_00410at 91.084 kb on - strand, within IAI47_00410at 91.084 kb on - strand, within IAI47_00410at 91.109 kb on + strand, within IAI47_00410at 91.109 kb on + strand, within IAI47_00410at 91.110 kb on - strand, within IAI47_00410at 91.110 kb on - strand, within IAI47_00410at 91.110 kb on - strand, within IAI47_00410at 91.110 kb on - strand, within IAI47_00410at 91.115 kb on + strand, within IAI47_00410at 91.115 kb on + strand, within IAI47_00410at 91.115 kb on + strand, within IAI47_00410at 91.115 kb on + strand, within IAI47_00410at 91.115 kb on + strand, within IAI47_00410at 91.116 kb on - strand, within IAI47_00410at 91.116 kb on - strand, within IAI47_00410at 91.116 kb on - strand, within IAI47_00410at 91.116 kb on - strand, within IAI47_00410at 91.131 kb on + strand, within IAI47_00410at 91.131 kb on + strand, within IAI47_00410at 91.131 kb on + strand, within IAI47_00410at 91.131 kb on + strand, within IAI47_00410at 91.132 kb on - strand, within IAI47_00410

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 2
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90,430 + +0.0
90,430 + +0.4
90,464 - +0.4
90,512 + -0.0
90,513 - -0.2
90,513 - +0.1
90,513 - +0.2
90,525 + IAI47_00405 0.11 +0.5
90,525 + IAI47_00405 0.11 +0.7
90,526 - IAI47_00405 0.11 -2.3
90,526 - IAI47_00405 0.11 +0.3
90,526 - IAI47_00405 0.11 +1.4
90,631 - IAI47_00405 0.32 +0.7
90,641 + IAI47_00405 0.34 +0.2
90,642 - IAI47_00405 0.34 -1.5
90,645 + IAI47_00405 0.34 -0.5
90,645 + IAI47_00405 0.34 +0.8
90,659 + IAI47_00405 0.37 -1.2
90,660 - IAI47_00405 0.37 +1.3
90,660 - IAI47_00405 0.37 -1.5
90,660 - IAI47_00405 0.37 +0.6
90,676 - IAI47_00405 0.40 -0.0
90,676 - IAI47_00405 0.40 +1.1
90,676 - IAI47_00405 0.40 +0.5
90,676 - IAI47_00405 0.40 +0.6
90,676 - IAI47_00405 0.40 +0.3
90,701 + IAI47_00405 0.45 +0.6
90,701 + IAI47_00405 0.45 +1.8
90,702 - IAI47_00405 0.46 -0.9
90,715 + IAI47_00405 0.48 -0.6
90,715 + IAI47_00405 0.48 -1.1
90,715 + IAI47_00405 0.48 +0.2
90,715 + IAI47_00405 0.48 +0.5
90,715 + IAI47_00405 0.48 +0.1
90,716 - IAI47_00405 0.48 +1.3
90,716 - IAI47_00405 0.48 +0.5
90,716 - IAI47_00405 0.48 -0.3
90,716 - IAI47_00405 0.48 -2.5
90,716 - IAI47_00405 0.48 -0.2
90,716 - IAI47_00405 0.48 +2.1
90,716 - IAI47_00405 0.48 -0.0
90,716 - IAI47_00405 0.48 +0.5
90,817 + IAI47_00405 0.68 -0.5
90,817 + IAI47_00405 0.68 +0.2
90,817 + IAI47_00405 0.68 +0.1
90,817 + IAI47_00405 0.68 -1.0
90,817 + IAI47_00405 0.68 -0.5
90,817 + IAI47_00405 0.68 +0.1
90,817 + IAI47_00405 0.68 +1.1
90,817 + IAI47_00405 0.68 +0.1
90,817 + IAI47_00405 0.68 -0.5
90,817 + IAI47_00405 0.68 +0.8
90,817 + IAI47_00405 0.68 +0.0
90,817 + IAI47_00405 0.68 +0.4
90,818 - IAI47_00405 0.68 +0.3
90,818 - IAI47_00405 0.68 +0.5
90,818 - IAI47_00405 0.68 -0.8
90,818 - IAI47_00405 0.68 +0.1
90,818 - IAI47_00405 0.68 -0.9
90,818 - IAI47_00405 0.68 -0.3
90,818 - IAI47_00405 0.68 +0.7
90,818 - IAI47_00405 0.68 -1.3
90,821 + IAI47_00405 0.69 -0.4
90,821 + IAI47_00405 0.69 +0.6
90,821 + IAI47_00405 0.69 -0.5
90,821 + IAI47_00405 0.69 -0.4
90,821 + IAI47_00405 0.69 +0.5
90,821 + IAI47_00405 0.69 -2.2
90,821 + IAI47_00405 0.69 +0.3
90,821 + IAI47_00405 0.69 -0.5
90,821 + IAI47_00405 0.69 -1.2
90,822 - IAI47_00405 0.69 -0.8
90,822 - IAI47_00405 0.69 +0.8
90,822 - IAI47_00405 0.69 -1.8
90,822 - IAI47_00405 0.69 +0.3
90,822 - IAI47_00405 0.69 +0.2
90,822 - IAI47_00405 0.69 -0.3
90,822 - IAI47_00405 0.69 -0.5
90,822 - IAI47_00405 0.69 +0.0
90,822 - IAI47_00405 0.69 -0.3
90,822 - IAI47_00405 0.69 +0.2
90,822 - IAI47_00405 0.69 -1.5
90,822 - IAI47_00405 0.69 -0.1
90,827 + IAI47_00405 0.70 -0.8
90,827 + IAI47_00405 0.70 +0.2
90,828 - IAI47_00405 0.70 -1.1
90,866 + IAI47_00405 0.78 +1.2
90,866 + IAI47_00405 0.78 +0.1
90,866 + IAI47_00405 0.78 -0.4
90,866 + IAI47_00405 0.78 +1.1
90,866 + IAI47_00405 0.78 -0.2
90,866 + IAI47_00405 0.78 -0.3
90,867 - IAI47_00405 0.78 +0.8
90,867 - IAI47_00405 0.78 -0.3
90,890 + IAI47_00405 0.83 +1.4
90,890 + IAI47_00405 0.83 -1.5
90,918 + IAI47_00405 0.88 -0.8
90,918 + IAI47_00405 0.88 -0.2
90,932 + -1.2
90,933 - +0.7
90,963 + +0.8
90,963 + -1.0
90,963 + -0.5
90,963 + -1.0
90,963 + +0.9
90,963 + -0.1
90,964 - -1.0
90,964 - -0.3
90,964 - +0.1
90,970 - -0.6
90,977 + -0.8
90,977 + +0.7
90,977 + +0.5
90,977 + +1.4
90,977 + -0.0
90,977 + +0.2
90,977 + -0.2
90,977 + -1.0
90,977 + -0.3
90,977 + +0.2
90,977 + +0.4
90,977 + +1.4
90,977 + +0.8
90,977 + +0.4
90,977 + +0.1
90,977 + +1.7
90,977 + +1.0
90,978 - -1.8
90,978 - +0.1
90,978 - -0.6
90,978 - -1.9
90,978 - +1.1
90,978 - -0.5
90,978 - -0.5
90,978 - +1.8
90,978 - -0.0
90,978 - +0.8
90,978 - -0.2
90,978 - +0.8
90,978 - -1.3
91,008 + -0.6
91,008 + -0.2
91,008 + -1.0
91,008 + -0.3
91,008 + -1.5
91,009 - +0.3
91,011 + +0.5
91,011 + -2.2
91,011 + -0.6
91,012 - -0.2
91,012 - +0.7
91,012 - -1.0
91,012 - +1.3
91,012 - +0.6
91,012 - +1.1
91,012 - +1.2
91,012 - -0.9
91,012 - +0.4
91,012 - +0.6
91,012 - +0.3
91,014 + -1.3
91,015 - +0.8
91,015 - -1.7
91,015 - -0.4
91,015 - +1.2
91,015 - +0.0
91,048 + IAI47_00410 0.12 -0.3
91,048 + IAI47_00410 0.12 +1.3
91,048 + IAI47_00410 0.12 +0.8
91,049 - IAI47_00410 0.12 +0.3
91,083 + IAI47_00410 0.18 -1.0
91,083 + IAI47_00410 0.18 +0.7
91,083 + IAI47_00410 0.18 -2.6
91,083 + IAI47_00410 0.18 +0.7
91,084 - IAI47_00410 0.19 +0.2
91,084 - IAI47_00410 0.19 +0.2
91,084 - IAI47_00410 0.19 +0.6
91,084 - IAI47_00410 0.19 -2.9
91,084 - IAI47_00410 0.19 -2.2
91,084 - IAI47_00410 0.19 +0.6
91,084 - IAI47_00410 0.19 +0.0
91,084 - IAI47_00410 0.19 -0.3
91,084 - IAI47_00410 0.19 -0.2
91,084 - IAI47_00410 0.19 +0.0
91,109 + IAI47_00410 0.23 -0.8
91,109 + IAI47_00410 0.23 +2.6
91,110 - IAI47_00410 0.23 -0.9
91,110 - IAI47_00410 0.23 +0.3
91,110 - IAI47_00410 0.23 -1.2
91,110 - IAI47_00410 0.23 +1.3
91,115 + IAI47_00410 0.24 -1.8
91,115 + IAI47_00410 0.24 -0.0
91,115 + IAI47_00410 0.24 -1.9
91,115 + IAI47_00410 0.24 -0.3
91,115 + IAI47_00410 0.24 -0.6
91,116 - IAI47_00410 0.24 +0.1
91,116 - IAI47_00410 0.24 -1.1
91,116 - IAI47_00410 0.24 +0.1
91,116 - IAI47_00410 0.24 -0.2
91,131 + IAI47_00410 0.27 -1.1
91,131 + IAI47_00410 0.27 -0.4
91,131 + IAI47_00410 0.27 -0.2
91,131 + IAI47_00410 0.27 +1.1
91,132 - IAI47_00410 0.27 +0.1

Or see this region's nucleotide sequence