Experiment: Ying_AminoAcid20 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_00295 and IAI47_00300 are separated by 47 nucleotides IAI47_00300 and IAI47_00305 are separated by 432 nucleotides
IAI47_00295: IAI47_00295 - 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG, at 63,356 to 63,973
_00295
IAI47_00300: IAI47_00300 - tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG, at 64,021 to 65,910
_00300
IAI47_00305: IAI47_00305 - FMN-binding protein MioC, at 66,343 to 66,783
_00305
Position (kb) 64
65
66 Strain fitness (log2 ratio) -2
-1
0
1
2 at 63.044 kb on - strand at 63.044 kb on - strand at 63.044 kb on - strand at 63.077 kb on + strand at 63.077 kb on + strand at 63.077 kb on + strand at 63.077 kb on + strand at 63.077 kb on + strand at 63.078 kb on - strand at 63.078 kb on - strand at 63.078 kb on - strand at 63.083 kb on + strand at 63.084 kb on - strand at 63.084 kb on - strand at 63.101 kb on + strand at 63.102 kb on - strand at 63.104 kb on + strand at 63.105 kb on - strand at 63.105 kb on - strand at 63.105 kb on - strand at 63.118 kb on + strand at 63.118 kb on + strand at 63.130 kb on - strand at 63.130 kb on - strand at 63.132 kb on - strand at 63.132 kb on - strand at 63.154 kb on - strand at 63.194 kb on - strand at 63.303 kb on + strand at 63.303 kb on + strand at 63.303 kb on + strand at 63.303 kb on + strand at 63.304 kb on - strand at 63.304 kb on - strand at 63.304 kb on - strand at 63.304 kb on - strand at 63.304 kb on - strand at 63.304 kb on - strand at 63.332 kb on + strand at 63.332 kb on + strand at 63.333 kb on - strand at 63.333 kb on - strand at 63.333 kb on - strand at 63.345 kb on + strand at 63.345 kb on + strand at 63.346 kb on - strand at 63.346 kb on - strand at 63.346 kb on - strand at 63.357 kb on + strand at 63.358 kb on - strand at 63.415 kb on + strand at 63.415 kb on + strand at 63.416 kb on - strand at 63.416 kb on - strand at 63.435 kb on + strand, within IAI47_00295 at 63.435 kb on + strand, within IAI47_00295 at 63.435 kb on + strand, within IAI47_00295 at 63.436 kb on - strand, within IAI47_00295 at 63.436 kb on - strand, within IAI47_00295 at 63.482 kb on - strand, within IAI47_00295 at 63.535 kb on + strand, within IAI47_00295 at 63.697 kb on + strand, within IAI47_00295 at 63.698 kb on - strand, within IAI47_00295 at 63.716 kb on + strand, within IAI47_00295 at 63.716 kb on + strand, within IAI47_00295 at 63.716 kb on + strand, within IAI47_00295 at 63.716 kb on + strand, within IAI47_00295 at 63.717 kb on - strand, within IAI47_00295 at 63.717 kb on - strand, within IAI47_00295 at 63.717 kb on - strand, within IAI47_00295 at 63.717 kb on - strand, within IAI47_00295 at 63.717 kb on - strand, within IAI47_00295 at 63.766 kb on + strand, within IAI47_00295 at 63.766 kb on + strand, within IAI47_00295 at 63.767 kb on - strand, within IAI47_00295 at 63.767 kb on - strand, within IAI47_00295 at 63.805 kb on + strand, within IAI47_00295 at 63.805 kb on + strand, within IAI47_00295 at 63.806 kb on - strand, within IAI47_00295 at 63.806 kb on - strand, within IAI47_00295 at 63.814 kb on + strand, within IAI47_00295 at 63.814 kb on + strand, within IAI47_00295 at 63.815 kb on - strand, within IAI47_00295 at 63.815 kb on - strand, within IAI47_00295 at 63.861 kb on + strand, within IAI47_00295 at 63.862 kb on - strand, within IAI47_00295 at 63.877 kb on + strand, within IAI47_00295 at 63.877 kb on + strand, within IAI47_00295 at 63.877 kb on + strand, within IAI47_00295 at 63.878 kb on - strand, within IAI47_00295 at 63.878 kb on - strand, within IAI47_00295 at 63.894 kb on + strand, within IAI47_00295 at 63.894 kb on + strand, within IAI47_00295 at 63.894 kb on + strand, within IAI47_00295 at 63.894 kb on + strand, within IAI47_00295 at 63.895 kb on - strand, within IAI47_00295 at 63.895 kb on - strand, within IAI47_00295 at 63.895 kb on - strand, within IAI47_00295 at 63.934 kb on + strand at 63.935 kb on - strand at 63.935 kb on - strand at 63.947 kb on + strand at 63.978 kb on + strand at 63.978 kb on + strand at 63.978 kb on + strand at 63.978 kb on + strand at 63.978 kb on + strand at 63.978 kb on + strand at 63.978 kb on + strand at 63.978 kb on + strand at 63.978 kb on + strand at 63.978 kb on + strand at 63.979 kb on - strand at 63.979 kb on - strand at 63.979 kb on - strand at 63.979 kb on - strand at 63.979 kb on - strand at 63.979 kb on - strand at 63.979 kb on - strand at 64.032 kb on + strand at 64.032 kb on + strand at 64.032 kb on + strand at 64.033 kb on - strand at 64.033 kb on - strand at 64.033 kb on - strand at 64.059 kb on - strand at 64.686 kb on - strand, within IAI47_00300 at 65.118 kb on - strand, within IAI47_00300 at 65.266 kb on - strand, within IAI47_00300 at 66.027 kb on - strand at 66.238 kb on + strand at 66.255 kb on + strand at 66.802 kb on - strand at 66.802 kb on - strand at 66.815 kb on + strand at 66.815 kb on + strand at 66.815 kb on + strand at 66.815 kb on + strand at 66.816 kb on - strand at 66.816 kb on - strand at 66.816 kb on - strand at 66.816 kb on - strand at 66.816 kb on - strand at 66.816 kb on - strand at 66.816 kb on - strand at 66.816 kb on - strand at 66.816 kb on - strand at 66.857 kb on + strand at 66.857 kb on + strand at 66.857 kb on + strand at 66.858 kb on - strand at 66.858 kb on - strand at 66.860 kb on + strand at 66.860 kb on + strand at 66.860 kb on + strand at 66.860 kb on + strand at 66.860 kb on + strand at 66.860 kb on + strand at 66.860 kb on + strand at 66.860 kb on + strand at 66.860 kb on + strand at 66.860 kb on + strand at 66.861 kb on - strand at 66.861 kb on - strand at 66.861 kb on - strand at 66.861 kb on - strand at 66.861 kb on - strand at 66.861 kb on - strand at 66.861 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 2 remove 63,044 - +0.3 63,044 - +0.5 63,044 - +0.4 63,077 + +0.0 63,077 + -1.3 63,077 + -1.3 63,077 + +0.3 63,077 + -0.5 63,078 - -1.0 63,078 - -0.2 63,078 - +0.0 63,083 + -0.3 63,084 - +0.7 63,084 - +1.3 63,101 + -0.7 63,102 - -0.8 63,104 + +0.4 63,105 - +0.8 63,105 - -0.4 63,105 - -0.4 63,118 + +0.3 63,118 + -1.3 63,130 - +1.8 63,130 - +0.5 63,132 - +0.6 63,132 - -0.2 63,154 - -0.2 63,194 - -0.3 63,303 + +1.8 63,303 + -0.9 63,303 + +0.0 63,303 + -0.0 63,304 - +0.9 63,304 - +0.3 63,304 - +0.2 63,304 - +0.5 63,304 - -0.4 63,304 - -1.2 63,332 + +0.0 63,332 + -1.2 63,333 - +0.1 63,333 - +0.3 63,333 - +0.3 63,345 + +0.0 63,345 + -0.1 63,346 - +0.2 63,346 - -0.8 63,346 - -0.1 63,357 + -0.5 63,358 - +1.4 63,415 + -0.9 63,415 + +1.0 63,416 - +0.4 63,416 - +0.8 63,435 + IAI47_00295 0.13 +0.0 63,435 + IAI47_00295 0.13 +0.3 63,435 + IAI47_00295 0.13 +0.4 63,436 - IAI47_00295 0.13 -0.8 63,436 - IAI47_00295 0.13 -0.0 63,482 - IAI47_00295 0.20 +0.8 63,535 + IAI47_00295 0.29 -1.4 63,697 + IAI47_00295 0.55 +2.1 63,698 - IAI47_00295 0.55 -1.0 63,716 + IAI47_00295 0.58 -0.2 63,716 + IAI47_00295 0.58 -0.2 63,716 + IAI47_00295 0.58 +0.0 63,716 + IAI47_00295 0.58 -0.0 63,717 - IAI47_00295 0.58 -0.9 63,717 - IAI47_00295 0.58 -1.6 63,717 - IAI47_00295 0.58 -0.3 63,717 - IAI47_00295 0.58 -1.2 63,717 - IAI47_00295 0.58 +1.3 63,766 + IAI47_00295 0.66 +0.2 63,766 + IAI47_00295 0.66 +0.1 63,767 - IAI47_00295 0.67 -0.4 63,767 - IAI47_00295 0.67 +0.3 63,805 + IAI47_00295 0.73 -0.7 63,805 + IAI47_00295 0.73 +0.4 63,806 - IAI47_00295 0.73 +0.7 63,806 - IAI47_00295 0.73 +0.8 63,814 + IAI47_00295 0.74 +1.4 63,814 + IAI47_00295 0.74 -0.4 63,815 - IAI47_00295 0.74 +0.4 63,815 - IAI47_00295 0.74 -1.8 63,861 + IAI47_00295 0.82 +1.1 63,862 - IAI47_00295 0.82 -1.5 63,877 + IAI47_00295 0.84 +0.2 63,877 + IAI47_00295 0.84 -1.2 63,877 + IAI47_00295 0.84 -0.5 63,878 - IAI47_00295 0.84 +0.5 63,878 - IAI47_00295 0.84 -0.3 63,894 + IAI47_00295 0.87 +0.8 63,894 + IAI47_00295 0.87 -0.2 63,894 + IAI47_00295 0.87 -0.2 63,894 + IAI47_00295 0.87 +0.5 63,895 - IAI47_00295 0.87 +0.1 63,895 - IAI47_00295 0.87 -1.2 63,895 - IAI47_00295 0.87 -0.9 63,934 + +0.0 63,935 - -0.2 63,935 - -0.9 63,947 + +0.8 63,978 + -0.4 63,978 + -0.2 63,978 + -1.8 63,978 + +0.2 63,978 + -0.2 63,978 + -0.3 63,978 + -0.9 63,978 + +0.6 63,978 + -0.2 63,978 + -1.0 63,979 - +1.2 63,979 - -0.7 63,979 - +2.1 63,979 - +0.4 63,979 - +1.0 63,979 - -0.0 63,979 - -1.2 64,032 + -0.9 64,032 + +0.6 64,032 + +0.4 64,033 - -1.3 64,033 - -0.6 64,033 - +1.8 64,059 - -2.2 64,686 - IAI47_00300 0.35 -2.5 65,118 - IAI47_00300 0.58 -0.8 65,266 - IAI47_00300 0.66 -0.2 66,027 - -0.2 66,238 + -1.3 66,255 + +0.1 66,802 - -0.8 66,802 - +0.3 66,815 + -2.3 66,815 + -0.0 66,815 + -0.2 66,815 + -0.6 66,816 - +0.4 66,816 - +1.5 66,816 - +0.4 66,816 - -0.5 66,816 - -0.1 66,816 - -0.2 66,816 - -2.3 66,816 - +1.4 66,816 - -0.1 66,857 + +1.2 66,857 + +1.1 66,857 + +0.5 66,858 - -1.8 66,858 - -0.6 66,860 + -0.7 66,860 + -0.8 66,860 + +0.8 66,860 + +0.6 66,860 + -1.0 66,860 + -0.8 66,860 + -0.6 66,860 + -0.0 66,860 + +2.2 66,860 + -0.8 66,861 - -0.0 66,861 - -0.3 66,861 - -0.8 66,861 - -0.4 66,861 - -1.5 66,861 - -0.8 66,861 - -0.2
Or see this region's nucleotide sequence