Strain Fitness in Pantoea sp. MT58 around IAI47_00105

Experiment: Ying_AminoAcid20 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 2
21,137	-		IAI47_00100	0.32	+0.2
21,196	+		IAI47_00100	0.36	+0.1
21,196	+		IAI47_00100	0.36	+0.4
21,196	+		IAI47_00100	0.36	+1.3
21,196	+		IAI47_00100	0.36	-0.0
21,197	-		IAI47_00100	0.36	+0.4
21,197	-		IAI47_00100	0.36	+0.1
21,197	-		IAI47_00100	0.36	-0.0
21,234	+		IAI47_00100	0.38	+0.2
21,234	+		IAI47_00100	0.38	+0.4
21,234	+		IAI47_00100	0.38	+1.0
21,234	+		IAI47_00100	0.38	+0.8
21,235	-		IAI47_00100	0.39	-0.2
21,235	-		IAI47_00100	0.39	-0.7
21,305	+		IAI47_00100	0.43	-0.0
21,306	-		IAI47_00100	0.43	+0.4
21,306	-		IAI47_00100	0.43	+0.1
21,331	+		IAI47_00100	0.45	+1.0
21,331	+		IAI47_00100	0.45	+1.3
21,331	+		IAI47_00100	0.45	+0.8
21,332	-		IAI47_00100	0.45	+0.1
21,332	-		IAI47_00100	0.45	-0.5
21,332	-		IAI47_00100	0.45	+0.2
21,332	-		IAI47_00100	0.45	-0.0
21,343	-		IAI47_00100	0.46	-0.2
21,377	+		IAI47_00100	0.48	+0.3
21,377	+		IAI47_00100	0.48	+1.5
21,377	+		IAI47_00100	0.48	+0.2
21,377	+		IAI47_00100	0.48	-0.5
21,377	+		IAI47_00100	0.48	+0.7
21,377	+		IAI47_00100	0.48	-0.4
21,377	+		IAI47_00100	0.48	-0.4
21,377	+		IAI47_00100	0.48	+1.1
21,378	-		IAI47_00100	0.48	+0.5
21,378	-		IAI47_00100	0.48	-0.8
21,378	-		IAI47_00100	0.48	+0.8
21,378	-		IAI47_00100	0.48	-0.1
21,378	-		IAI47_00100	0.48	+0.1
21,454	+		IAI47_00100	0.54	-0.4
21,455	-		IAI47_00100	0.54	-0.8
21,478	+		IAI47_00100	0.55	+0.6
21,478	+		IAI47_00100	0.55	+0.4
21,487	+		IAI47_00100	0.56	+0.6
21,487	+		IAI47_00100	0.56	+0.7
21,487	+		IAI47_00100	0.56	+0.2
21,487	+		IAI47_00100	0.56	+0.2
21,487	+		IAI47_00100	0.56	-0.5
21,488	-		IAI47_00100	0.56	+0.2
21,488	-		IAI47_00100	0.56	-1.5
21,488	-		IAI47_00100	0.56	-0.3
21,494	+		IAI47_00100	0.56	+0.3
21,494	+		IAI47_00100	0.56	-0.6
21,494	+		IAI47_00100	0.56	+0.3
21,494	+		IAI47_00100	0.56	+0.7
21,494	+		IAI47_00100	0.56	+1.1
21,495	-		IAI47_00100	0.56	+0.5
21,495	-		IAI47_00100	0.56	+1.2
21,495	-		IAI47_00100	0.56	-0.3
21,495	-		IAI47_00100	0.56	-0.5
21,495	-		IAI47_00100	0.56	+0.3
21,495	-		IAI47_00100	0.56	+1.0
21,495	-		IAI47_00100	0.56	-0.2
21,495	-		IAI47_00100	0.56	-0.4
21,495	-		IAI47_00100	0.56	+1.8
21,495	-		IAI47_00100	0.56	+0.5
21,495	-		IAI47_00100	0.56	+0.1
21,495	-		IAI47_00100	0.56	-0.2
21,495	-		IAI47_00100	0.56	+0.5
21,496	+		IAI47_00100	0.56	-0.8
21,496	+		IAI47_00100	0.56	+0.4
21,497	-		IAI47_00100	0.56	+1.7
21,497	-		IAI47_00100	0.56	-1.5
21,497	-		IAI47_00100	0.56	-0.5
21,544	+		IAI47_00100	0.60	+0.1
21,545	-		IAI47_00100	0.60	+2.5
21,545	-		IAI47_00100	0.60	-0.3
21,680	+		IAI47_00100	0.69	-0.2
21,680	+		IAI47_00100	0.69	+0.7
21,680	+		IAI47_00100	0.69	+0.7
21,680	+		IAI47_00100	0.69	-0.1
21,680	+		IAI47_00100	0.69	+0.5
21,680	+		IAI47_00100	0.69	+1.1
21,680	+		IAI47_00100	0.69	-0.5
21,680	+		IAI47_00100	0.69	-0.1
21,680	+		IAI47_00100	0.69	-0.0
21,680	+		IAI47_00100	0.69	-0.5
21,681	-		IAI47_00100	0.69	+0.7
21,681	-		IAI47_00100	0.69	-1.2
21,681	-		IAI47_00100	0.69	+0.6
21,681	-		IAI47_00100	0.69	+0.0
21,681	-		IAI47_00100	0.69	+0.2
21,681	-		IAI47_00100	0.69	+1.2
21,681	-		IAI47_00100	0.69	-0.6
21,707	+		IAI47_00100	0.71	+0.1
21,707	+		IAI47_00100	0.71	-2.3
21,707	+		IAI47_00100	0.71	-0.5
21,707	+		IAI47_00100	0.71	-0.2
21,707	+		IAI47_00100	0.71	-0.6
21,708	-		IAI47_00100	0.71	+0.4
21,708	-		IAI47_00100	0.71	+1.0
21,708	-		IAI47_00100	0.71	-0.4
21,708	-		IAI47_00100	0.71	-1.5
21,708	-		IAI47_00100	0.71	+0.8
21,709	+		IAI47_00100	0.71	-0.8
21,776	+		IAI47_00100	0.76	+0.1
21,776	+		IAI47_00100	0.76	-0.7
21,777	-		IAI47_00100	0.76	+1.1
21,777	-		IAI47_00100	0.76	-0.6
21,893	+		IAI47_00100	0.84	-0.8
21,893	+		IAI47_00100	0.84	-0.2
21,893	+		IAI47_00100	0.84	-0.0
21,893	+		IAI47_00100	0.84	+1.2
21,893	+		IAI47_00100	0.84	-1.9
21,893	+		IAI47_00100	0.84	-0.5
21,893	+		IAI47_00100	0.84	+1.2
21,893	+		IAI47_00100	0.84	+0.2
21,893	+		IAI47_00100	0.84	+0.5
21,893	+		IAI47_00100	0.84	+0.3
21,893	+		IAI47_00100	0.84	-0.2
21,893	+		IAI47_00100	0.84	+0.0
21,893	+		IAI47_00100	0.84	+1.1
21,894	+		IAI47_00100	0.84	-1.0
21,894	-		IAI47_00100	0.84	+0.1
21,894	-		IAI47_00100	0.84	-0.3
21,894	-		IAI47_00100	0.84	-0.6
21,894	-		IAI47_00100	0.84	+0.5
21,894	-		IAI47_00100	0.84	+2.8
21,894	-		IAI47_00100	0.84	-0.3
21,894	-		IAI47_00100	0.84	+1.2
21,894	-		IAI47_00100	0.84	-0.4
21,894	-		IAI47_00100	0.84	-0.4
21,958	+		IAI47_00100	0.88	+1.0
22,010	+				-0.8
22,010	+				+1.1
22,072	+				-0.4
22,072	+				-0.7
22,072	+				-2.5
22,072	+				-0.5
22,072	+				-0.4
22,072	+				-1.6
22,073	-				-0.3
22,073	-				+0.3
22,130	+				+1.0
22,130	+				-0.0
22,130	+				+1.3
22,131	-				+1.8
22,131	-				+1.2
22,131	-				+1.8
22,131	-				+1.5
22,189	-				-0.2
22,208	+				-1.8
22,208	+				-0.2
22,208	+				+0.6
22,208	+				-1.3
22,208	+				+0.7
22,208	+				-0.2
22,208	+				+0.8
22,208	+				+0.0
22,208	+				+0.7
22,209	-				-0.2
22,209	-				-1.1
22,209	-				+1.1
22,209	-				-0.7
22,221	+				-1.5
22,221	+				+0.7
22,221	+				+1.3
22,222	-				-0.1
22,222	-				+0.6
22,222	-				+0.1
22,222	-				+1.4
22,222	-				+1.1
22,222	-				+0.8
22,303	-		IAI47_00105	0.14	-0.8
22,314	-		IAI47_00105	0.15	+2.4
22,409	+		IAI47_00105	0.22	+0.5
22,451	+		IAI47_00105	0.26	+1.1
22,451	+		IAI47_00105	0.26	-0.9
22,451	+		IAI47_00105	0.26	-0.3
22,451	+		IAI47_00105	0.26	+0.1
22,451	+		IAI47_00105	0.26	+0.5
22,451	+		IAI47_00105	0.26	-0.8
22,451	+		IAI47_00105	0.26	+1.5
22,452	-		IAI47_00105	0.26	-0.6
22,452	-		IAI47_00105	0.26	+1.3
22,452	-		IAI47_00105	0.26	+1.1
22,452	-		IAI47_00105	0.26	-0.6
22,452	-		IAI47_00105	0.26	+0.4
22,452	-		IAI47_00105	0.26	-1.1
22,452	-		IAI47_00105	0.26	-0.5
22,452	-		IAI47_00105	0.26	-0.6
22,452	-		IAI47_00105	0.26	+0.1
22,551	+		IAI47_00105	0.34	+0.1
22,551	+		IAI47_00105	0.34	+0.6
22,551	+		IAI47_00105	0.34	-0.4
22,551	+		IAI47_00105	0.34	-0.8
22,552	-		IAI47_00105	0.34	-0.6
22,552	-		IAI47_00105	0.34	-2.9
22,552	-		IAI47_00105	0.34	-0.1
22,578	+		IAI47_00105	0.36	-0.2
22,578	+		IAI47_00105	0.36	-0.5
22,578	+		IAI47_00105	0.36	-0.6
22,579	-		IAI47_00105	0.36	+1.0
22,579	-		IAI47_00105	0.36	+1.4
22,599	+		IAI47_00105	0.38	+0.4
22,599	+		IAI47_00105	0.38	-0.5
22,599	+		IAI47_00105	0.38	+0.3
22,599	+		IAI47_00105	0.38	+1.8
22,599	+		IAI47_00105	0.38	+2.1
22,600	-		IAI47_00105	0.38	+0.4
22,600	-		IAI47_00105	0.38	+0.2
22,602	+		IAI47_00105	0.38	+1.4
22,602	+		IAI47_00105	0.38	+0.3
22,603	-		IAI47_00105	0.38	+1.1
22,718	+		IAI47_00105	0.47	-0.3
22,718	+		IAI47_00105	0.47	+0.0
22,718	+		IAI47_00105	0.47	-0.0
22,718	+		IAI47_00105	0.47	-1.2
22,718	+		IAI47_00105	0.47	-0.9
22,718	+		IAI47_00105	0.47	+0.3
22,719	-		IAI47_00105	0.47	+0.2
22,719	-		IAI47_00105	0.47	-0.3
22,719	-		IAI47_00105	0.47	+0.0
22,719	-		IAI47_00105	0.47	-0.6
22,719	-		IAI47_00105	0.47	+1.2
22,719	-		IAI47_00105	0.47	+0.4
22,719	-		IAI47_00105	0.47	+0.8
22,800	+		IAI47_00105	0.54	+1.2
22,801	-		IAI47_00105	0.54	-0.6
22,806	+		IAI47_00105	0.54	-0.8
22,880	+		IAI47_00105	0.60	+0.1
22,880	+		IAI47_00105	0.60	-0.3
22,881	-		IAI47_00105	0.60	+0.1
22,881	-		IAI47_00105	0.60	-0.3
22,881	-		IAI47_00105	0.60	+0.8
22,881	-		IAI47_00105	0.60	+3.4
22,881	-		IAI47_00105	0.60	-1.0
22,881	-		IAI47_00105	0.60	-0.3
22,881	-		IAI47_00105	0.60	-0.2
22,881	-		IAI47_00105	0.60	-1.5
22,881	-		IAI47_00105	0.60	+1.2
22,881	-		IAI47_00105	0.60	-0.1
22,881	-		IAI47_00105	0.60	+0.1
22,884	+		IAI47_00105	0.60	-0.3
22,884	+		IAI47_00105	0.60	+0.8
22,885	-		IAI47_00105	0.60	+0.3
22,962	-		IAI47_00105	0.67	-1.2
22,970	+		IAI47_00105	0.67	-0.4
22,971	-		IAI47_00105	0.67	-0.1
23,030	+		IAI47_00105	0.72	+0.0
23,030	+		IAI47_00105	0.72	-1.2
23,030	+		IAI47_00105	0.72	+0.1
23,030	+		IAI47_00105	0.72	-0.2
23,031	-		IAI47_00105	0.72	+2.1
23,031	-		IAI47_00105	0.72	-0.0
23,038	-		IAI47_00105	0.73	-2.9
23,045	+		IAI47_00105	0.73	+0.0
23,045	+		IAI47_00105	0.73	-0.2
23,045	+		IAI47_00105	0.73	-0.5
23,046	-		IAI47_00105	0.73	-1.0
23,046	-		IAI47_00105	0.73	-0.4
23,046	-		IAI47_00105	0.73	-1.4
23,171	+		IAI47_00105	0.83	+0.4
23,172	-		IAI47_00105	0.83	+0.2
23,172	-		IAI47_00105	0.83	+0.7
23,172	-		IAI47_00105	0.83	+0.5
23,172	-		IAI47_00105	0.83	+0.0
23,172	-		IAI47_00105	0.83	+0.9
23,172	-		IAI47_00105	0.83	-0.6
23,172	-		IAI47_00105	0.83	+1.0
23,172	-		IAI47_00105	0.83	-1.8
23,172	-		IAI47_00105	0.83	+1.0
23,234	+		IAI47_00105	0.88	+0.7
23,234	+		IAI47_00105	0.88	-0.5
23,234	+		IAI47_00105	0.88	-0.2
23,234	+		IAI47_00105	0.88	+1.6
23,235	-		IAI47_00105	0.88	-1.3
23,313	+				+0.3
23,313	+				-0.5
23,314	-				-0.2
23,350	-				-0.2
23,380	-				-0.8
23,380	-				-0.9
23,380	-				-0.3
23,380	-				-0.0
23,386	+				-1.0
23,386	+				-0.7
23,387	-				-0.2
23,390	+				-0.7
23,391	-				+0.4
23,391	-				-1.3
23,391	-				-0.2
23,400	-				-0.2
23,420	+				+0.7
23,462	+				-0.9
23,462	+				+0.8
23,463	-				-0.0
23,530	+				-0.2
23,531	-				+1.4
23,817	+		IAI47_00110	0.37	+1.0
23,818	-		IAI47_00110	0.37	+1.2
23,914	-		IAI47_00110	0.46	+0.8
23,914	-		IAI47_00110	0.46	-1.0
23,915	+		IAI47_00110	0.47	+0.1
23,915	+		IAI47_00110	0.47	-0.7
23,915	+		IAI47_00110	0.47	+0.8
23,915	+		IAI47_00110	0.47	+3.1
23,915	+		IAI47_00110	0.47	-0.2
23,916	-		IAI47_00110	0.47	+1.1
23,971	-		IAI47_00110	0.52	-2.3
23,971	-		IAI47_00110	0.52	+0.2
23,988	+		IAI47_00110	0.54	-0.5
24,001	-		IAI47_00110	0.55	-0.9
24,001	-		IAI47_00110	0.55	-0.8
24,007	+		IAI47_00110	0.56	+1.4
24,007	+		IAI47_00110	0.56	-0.3
24,007	+		IAI47_00110	0.56	-0.2
24,007	+		IAI47_00110	0.56	+0.3
24,008	-		IAI47_00110	0.56	-0.3
24,008	-		IAI47_00110	0.56	-0.2
24,008	-		IAI47_00110	0.56	+0.4
24,008	-		IAI47_00110	0.56	+1.1
24,008	-		IAI47_00110	0.56	-0.5
24,008	-		IAI47_00110	0.56	-0.5
24,008	-		IAI47_00110	0.56	+0.1
24,060	+		IAI47_00110	0.61	+0.4
24,061	-		IAI47_00110	0.62	-0.2
24,190	+		IAI47_00110	0.75	+0.8
24,190	+		IAI47_00110	0.75	-0.2
24,320	+		IAI47_00110	0.88	-1.6
24,320	+		IAI47_00110	0.88	+2.4
24,320	+		IAI47_00110	0.88	+0.3
24,320	+		IAI47_00110	0.88	+2.8
24,320	+		IAI47_00110	0.88	-0.7
24,321	-		IAI47_00110	0.88	-0.3
24,321	-		IAI47_00110	0.88	-0.2
24,321	-		IAI47_00110	0.88	-0.8