Strain Fitness in Pantoea sp. MT58 around IAI47_21730

Experiment: Ying_AminoAcid20 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 2
89,080	+		IAI47_21725	0.70	+1.4
89,080	+		IAI47_21725	0.70	+0.8
89,126	-		IAI47_21725	0.72	+0.4
89,141	+		IAI47_21725	0.72	+2.0
89,141	+		IAI47_21725	0.72	+0.2
89,142	-		IAI47_21725	0.72	+0.2
89,261	+		IAI47_21725	0.76	-0.5
89,261	+		IAI47_21725	0.76	+2.0
89,262	-		IAI47_21725	0.76	-0.2
89,262	-		IAI47_21725	0.76	-0.0
89,358	+		IAI47_21725	0.79	-0.3
89,358	+		IAI47_21725	0.79	+0.9
89,358	+		IAI47_21725	0.79	+0.3
89,358	+		IAI47_21725	0.79	+1.9
89,358	+		IAI47_21725	0.79	+1.0
89,358	+		IAI47_21725	0.79	-1.0
89,359	-		IAI47_21725	0.79	-0.5
89,359	-		IAI47_21725	0.79	-0.7
89,359	-		IAI47_21725	0.79	-0.6
89,359	-		IAI47_21725	0.79	-1.3
89,368	+		IAI47_21725	0.80	+1.0
89,368	+		IAI47_21725	0.80	-0.5
89,368	+		IAI47_21725	0.80	-0.8
89,368	+		IAI47_21725	0.80	-1.3
89,368	+		IAI47_21725	0.80	-0.4
89,369	-		IAI47_21725	0.80	+0.7
89,369	-		IAI47_21725	0.80	-0.0
89,468	+		IAI47_21725	0.83	-0.2
89,468	+		IAI47_21725	0.83	-0.7
89,468	+		IAI47_21725	0.83	-0.4
89,468	+		IAI47_21725	0.83	+2.0
89,469	-		IAI47_21725	0.83	-0.0
89,469	-		IAI47_21725	0.83	-1.7
89,469	-		IAI47_21725	0.83	-0.0
89,469	-		IAI47_21725	0.83	+0.2
89,638	+		IAI47_21725	0.88	+2.6
89,639	-		IAI47_21725	0.88	+0.6
89,639	-		IAI47_21725	0.88	+1.4
89,639	-		IAI47_21725	0.88	+1.0
89,660	+		IAI47_21725	0.89	-0.6
89,693	+				-0.0
89,694	-				-1.2
89,732	+				-0.2
89,732	+				-0.3
89,732	+				+0.8
89,732	+				-1.3
89,733	-				-0.7
89,733	-				+0.1
89,750	+				+0.6
89,786	+				-1.2
89,861	+				-0.7
89,862	-				-0.3
89,862	-				-0.7
89,904	-				+0.3
89,925	-				-0.6
89,939	+				+0.7
89,939	+				-0.7
89,939	+				-0.0
89,939	+				-0.8
89,939	+				-0.2
89,939	+				-0.1
89,939	+				+1.1
89,940	-				-0.6
89,940	-				+0.6
89,940	-				+1.7
89,940	-				-0.8
89,940	-				+2.0
89,940	-				+2.0
89,944	+				-0.4
89,960	-				-0.2
89,988	+				-0.0
89,989	-				-1.0
90,108	+		IAI47_21730	0.24	+1.0
90,108	+		IAI47_21730	0.24	-1.0
90,108	+		IAI47_21730	0.24	-0.6
90,108	+		IAI47_21730	0.24	-1.9
90,109	-		IAI47_21730	0.24	-1.6
90,109	-		IAI47_21730	0.24	-1.3
90,153	+		IAI47_21730	0.42	-0.6
90,154	-		IAI47_21730	0.42	-0.3
90,154	-		IAI47_21730	0.42	-1.2
90,154	-		IAI47_21730	0.42	+0.2
90,159	+		IAI47_21730	0.44	-0.8
90,159	+		IAI47_21730	0.44	+1.7
90,159	+		IAI47_21730	0.44	-0.7
90,159	+		IAI47_21730	0.44	-1.2
90,159	+		IAI47_21730	0.44	+0.2
90,160	-		IAI47_21730	0.45	+0.4
90,160	-		IAI47_21730	0.45	-0.4
90,160	-		IAI47_21730	0.45	-0.8
90,171	+		IAI47_21730	0.49	-0.3
90,172	-		IAI47_21730	0.50	-1.6
90,278	+				-1.6
90,278	+				-0.0
90,278	+				-0.4
90,279	-				-0.0
90,279	-				+1.4
90,285	+				-0.6
90,285	+				+1.0
90,286	-				-0.0
90,286	-				+0.4
90,286	-				-0.6
90,287	+				+0.5
90,287	+				-0.6
90,287	+				+0.7
90,287	+				+0.5
90,287	+				-0.6
90,287	+				-1.0
90,287	+				-0.0
90,287	+				+0.4
90,287	+				-0.7
90,287	+				-0.5
90,287	+				-0.1
90,288	-				-1.3
90,288	-				-0.9
90,288	-				-1.3
90,288	-				+0.2
90,288	-				+1.0
90,288	-				-0.4
90,288	-				-0.1
90,288	-				+1.0
90,288	-				-0.5
90,288	-				-0.0
90,288	-				+0.2
90,288	-				-1.2
90,288	-				+2.3
90,288	-				+0.6
90,288	-				-2.0
90,288	-				-0.9
90,288	-				-1.0
90,288	-				+1.0
90,288	-				+1.2
90,288	-				-0.2
90,288	-				-1.2
90,288	-				-0.6
90,288	-				-0.0
90,289	+				+1.4
90,289	+				-1.1
90,289	+				-1.0
90,289	+				-0.0
90,289	+				-0.3
90,289	+				-0.4
90,289	+				-0.0
90,289	+				-0.7
90,289	+				-0.2
90,290	-				-0.0
90,290	-				-0.8
90,290	-				-0.0
90,290	-				+2.0
90,290	-				+0.7
90,290	-				-0.3
90,290	-				-1.1
90,290	-				+0.3
90,290	-				-1.3
90,290	-				-1.3
90,290	-				-0.3
90,290	-				-0.8
90,305	-				+0.2
90,337	+				-2.2
90,338	-				-0.7
90,350	-				+0.6
90,350	-				-1.3
90,354	+				+0.2
90,354	+				-0.0
90,354	+				-0.0
90,354	+				-0.8
90,354	+				-0.0
90,354	+				+1.2
90,354	+				+0.2
90,354	+				-0.2
90,355	-				-0.3
90,355	-				+0.5
90,355	-				-0.2
90,380	+				+0.2
90,380	+				-1.5
90,380	+				-0.6
90,381	-				-0.3
90,381	-				+1.2
90,574	-		IAI47_21735	0.22	+0.5
90,659	+		IAI47_21735	0.31	+1.0
90,659	+		IAI47_21735	0.31	+2.0
90,660	-		IAI47_21735	0.31	+0.2
90,660	-		IAI47_21735	0.31	-0.0
90,660	-		IAI47_21735	0.31	+0.3
90,660	-		IAI47_21735	0.31	+0.3
90,660	-		IAI47_21735	0.31	+2.0
90,735	+		IAI47_21735	0.40	-0.2
90,736	-		IAI47_21735	0.40	-0.1
90,742	+		IAI47_21735	0.41	+0.5
90,743	-		IAI47_21735	0.41	-1.3
90,851	-		IAI47_21735	0.53	+0.7
90,862	+		IAI47_21735	0.54	-0.0
90,862	+		IAI47_21735	0.54	+0.2
90,862	+		IAI47_21735	0.54	+0.3
90,862	+		IAI47_21735	0.54	-0.2
90,885	+		IAI47_21735	0.57	-0.6
90,885	+		IAI47_21735	0.57	+0.4
90,885	+		IAI47_21735	0.57	+1.0
90,885	+		IAI47_21735	0.57	-1.0
90,885	+		IAI47_21735	0.57	+0.4
90,885	+		IAI47_21735	0.57	-1.3
90,885	+		IAI47_21735	0.57	+1.2
90,886	-		IAI47_21735	0.57	+1.0
90,920	+		IAI47_21735	0.61	+1.4
90,931	-		IAI47_21735	0.62	+0.3
90,936	+		IAI47_21735	0.62	-1.0
90,937	-		IAI47_21735	0.62	-1.8
90,937	-		IAI47_21735	0.62	-0.6
90,937	-		IAI47_21735	0.62	+1.0
90,937	-		IAI47_21735	0.62	+0.1
90,963	+		IAI47_21735	0.65	-0.0
90,963	+		IAI47_21735	0.65	-1.3
90,964	-		IAI47_21735	0.65	-0.7
91,165	+		IAI47_21735	0.88	-0.5
91,165	+		IAI47_21735	0.88	+0.0
91,165	+		IAI47_21735	0.88	-0.4
91,166	-		IAI47_21735	0.88	-1.6
91,193	-				+1.0
91,251	-				-0.2
91,272	+				-0.5
91,272	+				-1.4
91,273	-				-1.3
91,273	-				+0.6
91,293	-				-0.0