Experiment: Ying_AminoAcid20 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_20125 and IAI47_20130 are separated by 44 nucleotides IAI47_20130 and IAI47_20135 are separated by 51 nucleotides IAI47_20135 and IAI47_20140 are separated by 388 nucleotides
IAI47_20125: IAI47_20125 - hypothetical protein, at 258,873 to 259,268
_20125
IAI47_20130: IAI47_20130 - nuclear transport factor 2 family protein, at 259,313 to 259,786
_20130
IAI47_20135: IAI47_20135 - 6,7-dimethyl-8-ribityllumazine synthase, at 259,838 to 260,272
_20135
IAI47_20140: IAI47_20140 - phage antirepressor KilAC domain-containing protein, at 260,661 to 261,368
_20140
Position (kb) 259
260
261 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 258.887 kb on + strand at 258.888 kb on - strand at 258.888 kb on - strand at 258.916 kb on + strand, within IAI47_20125 at 258.916 kb on + strand, within IAI47_20125 at 258.916 kb on + strand, within IAI47_20125 at 259.042 kb on + strand, within IAI47_20125 at 259.042 kb on + strand, within IAI47_20125 at 259.042 kb on + strand, within IAI47_20125 at 259.042 kb on + strand, within IAI47_20125 at 259.043 kb on - strand, within IAI47_20125 at 259.043 kb on - strand, within IAI47_20125 at 259.066 kb on + strand, within IAI47_20125 at 259.067 kb on - strand, within IAI47_20125 at 259.067 kb on - strand, within IAI47_20125 at 259.067 kb on - strand, within IAI47_20125 at 259.067 kb on - strand, within IAI47_20125 at 259.067 kb on - strand, within IAI47_20125 at 259.070 kb on + strand, within IAI47_20125 at 259.070 kb on + strand, within IAI47_20125 at 259.070 kb on + strand, within IAI47_20125 at 259.071 kb on - strand, within IAI47_20125 at 259.125 kb on + strand, within IAI47_20125 at 259.125 kb on + strand, within IAI47_20125 at 259.145 kb on + strand, within IAI47_20125 at 259.146 kb on - strand, within IAI47_20125 at 259.146 kb on - strand, within IAI47_20125 at 259.146 kb on - strand, within IAI47_20125 at 259.171 kb on + strand, within IAI47_20125 at 259.171 kb on + strand, within IAI47_20125 at 259.171 kb on + strand, within IAI47_20125 at 259.172 kb on - strand, within IAI47_20125 at 259.172 kb on - strand, within IAI47_20125 at 259.212 kb on + strand, within IAI47_20125 at 259.212 kb on + strand, within IAI47_20125 at 259.213 kb on - strand, within IAI47_20125 at 259.221 kb on - strand, within IAI47_20125 at 259.250 kb on + strand at 259.250 kb on + strand at 259.251 kb on - strand at 259.251 kb on - strand at 259.314 kb on + strand at 259.315 kb on - strand at 259.315 kb on - strand at 259.316 kb on + strand at 259.316 kb on + strand at 259.317 kb on - strand at 259.317 kb on - strand at 259.400 kb on - strand, within IAI47_20130 at 259.433 kb on + strand, within IAI47_20130 at 259.433 kb on + strand, within IAI47_20130 at 259.434 kb on - strand, within IAI47_20130 at 259.470 kb on + strand, within IAI47_20130 at 259.470 kb on + strand, within IAI47_20130 at 259.471 kb on - strand, within IAI47_20130 at 259.471 kb on - strand, within IAI47_20130 at 259.471 kb on - strand, within IAI47_20130 at 259.471 kb on - strand, within IAI47_20130 at 259.480 kb on - strand, within IAI47_20130 at 259.509 kb on + strand, within IAI47_20130 at 259.510 kb on - strand, within IAI47_20130 at 259.510 kb on - strand, within IAI47_20130 at 259.558 kb on + strand, within IAI47_20130 at 259.558 kb on + strand, within IAI47_20130 at 259.559 kb on - strand, within IAI47_20130 at 259.559 kb on - strand, within IAI47_20130 at 259.646 kb on - strand, within IAI47_20130 at 259.668 kb on + strand, within IAI47_20130 at 259.669 kb on - strand, within IAI47_20130 at 259.801 kb on - strand at 259.801 kb on - strand at 259.909 kb on + strand, within IAI47_20135 at 259.909 kb on + strand, within IAI47_20135 at 259.909 kb on + strand, within IAI47_20135 at 259.909 kb on + strand, within IAI47_20135 at 259.910 kb on - strand, within IAI47_20135 at 259.910 kb on - strand, within IAI47_20135 at 259.911 kb on + strand, within IAI47_20135 at 259.911 kb on + strand, within IAI47_20135 at 259.911 kb on + strand, within IAI47_20135 at 259.911 kb on + strand, within IAI47_20135 at 259.911 kb on + strand, within IAI47_20135 at 259.911 kb on + strand, within IAI47_20135 at 259.912 kb on - strand, within IAI47_20135 at 259.912 kb on - strand, within IAI47_20135 at 259.912 kb on - strand, within IAI47_20135 at 259.912 kb on - strand, within IAI47_20135 at 259.912 kb on - strand, within IAI47_20135 at 259.912 kb on - strand, within IAI47_20135 at 259.912 kb on - strand, within IAI47_20135 at 259.912 kb on - strand, within IAI47_20135 at 259.912 kb on - strand, within IAI47_20135 at 259.945 kb on + strand, within IAI47_20135 at 259.946 kb on - strand, within IAI47_20135 at 260.043 kb on + strand, within IAI47_20135 at 260.043 kb on + strand, within IAI47_20135 at 260.043 kb on + strand, within IAI47_20135 at 260.043 kb on + strand, within IAI47_20135 at 260.043 kb on + strand, within IAI47_20135 at 260.043 kb on + strand, within IAI47_20135 at 260.043 kb on + strand, within IAI47_20135 at 260.044 kb on - strand, within IAI47_20135 at 260.044 kb on - strand, within IAI47_20135 at 260.044 kb on - strand, within IAI47_20135 at 260.044 kb on - strand, within IAI47_20135 at 260.057 kb on + strand, within IAI47_20135 at 260.057 kb on + strand, within IAI47_20135 at 260.057 kb on + strand, within IAI47_20135 at 260.057 kb on + strand, within IAI47_20135 at 260.058 kb on - strand, within IAI47_20135 at 260.058 kb on - strand, within IAI47_20135 at 260.058 kb on - strand, within IAI47_20135 at 260.058 kb on - strand, within IAI47_20135 at 260.120 kb on + strand, within IAI47_20135 at 260.166 kb on + strand, within IAI47_20135 at 260.166 kb on + strand, within IAI47_20135 at 260.166 kb on + strand, within IAI47_20135 at 260.167 kb on - strand, within IAI47_20135 at 260.167 kb on - strand, within IAI47_20135 at 260.245 kb on + strand at 260.245 kb on + strand at 260.246 kb on - strand at 260.248 kb on + strand at 260.248 kb on + strand at 260.249 kb on - strand at 260.249 kb on - strand at 260.286 kb on + strand at 260.286 kb on + strand at 260.286 kb on + strand at 260.286 kb on + strand at 260.287 kb on - strand at 260.288 kb on + strand at 260.288 kb on + strand at 260.289 kb on - strand at 260.289 kb on - strand at 260.289 kb on - strand at 260.384 kb on + strand at 260.384 kb on + strand at 260.384 kb on + strand at 260.384 kb on + strand at 260.384 kb on + strand at 260.384 kb on + strand at 260.384 kb on + strand at 260.385 kb on - strand at 260.385 kb on - strand at 260.385 kb on - strand at 260.385 kb on - strand at 260.386 kb on + strand at 260.386 kb on + strand at 260.386 kb on + strand at 260.386 kb on + strand at 260.392 kb on - strand at 260.392 kb on - strand at 260.397 kb on - strand at 260.423 kb on + strand at 260.423 kb on + strand at 260.423 kb on + strand at 260.424 kb on - strand at 260.424 kb on - strand at 260.425 kb on + strand at 260.429 kb on + strand at 260.429 kb on + strand at 260.429 kb on + strand at 260.429 kb on + strand at 260.429 kb on + strand at 260.430 kb on - strand at 260.430 kb on - strand at 260.430 kb on - strand at 260.457 kb on + strand at 260.457 kb on + strand at 260.457 kb on + strand at 260.457 kb on + strand at 260.457 kb on + strand at 260.457 kb on + strand at 260.457 kb on + strand at 260.458 kb on - strand at 260.458 kb on - strand at 260.458 kb on - strand at 260.458 kb on - strand at 260.458 kb on - strand at 260.458 kb on - strand at 260.458 kb on - strand at 260.509 kb on + strand at 260.509 kb on + strand at 260.510 kb on - strand at 260.531 kb on + strand at 260.531 kb on + strand at 260.532 kb on - strand at 260.548 kb on - strand at 260.562 kb on - strand at 260.602 kb on - strand at 260.613 kb on - strand at 260.613 kb on - strand at 260.668 kb on + strand at 260.669 kb on - strand at 260.810 kb on + strand, within IAI47_20140 at 260.810 kb on + strand, within IAI47_20140 at 260.810 kb on + strand, within IAI47_20140 at 260.810 kb on + strand, within IAI47_20140 at 260.810 kb on + strand, within IAI47_20140 at 260.811 kb on - strand, within IAI47_20140 at 260.811 kb on - strand, within IAI47_20140 at 260.823 kb on + strand, within IAI47_20140 at 260.824 kb on - strand, within IAI47_20140 at 260.824 kb on - strand, within IAI47_20140 at 260.824 kb on - strand, within IAI47_20140 at 260.853 kb on + strand, within IAI47_20140 at 261.074 kb on + strand, within IAI47_20140 at 261.074 kb on + strand, within IAI47_20140 at 261.180 kb on + strand, within IAI47_20140 at 261.180 kb on + strand, within IAI47_20140 at 261.180 kb on + strand, within IAI47_20140 at 261.180 kb on + strand, within IAI47_20140 at 261.180 kb on + strand, within IAI47_20140 at 261.180 kb on + strand, within IAI47_20140 at 261.181 kb on - strand, within IAI47_20140 at 261.181 kb on - strand, within IAI47_20140 at 261.181 kb on - strand, within IAI47_20140 at 261.181 kb on - strand, within IAI47_20140 at 261.181 kb on - strand, within IAI47_20140 at 261.181 kb on - strand, within IAI47_20140 at 261.181 kb on - strand, within IAI47_20140 at 261.200 kb on + strand, within IAI47_20140 at 261.201 kb on - strand, within IAI47_20140 at 261.213 kb on + strand, within IAI47_20140 at 261.213 kb on + strand, within IAI47_20140 at 261.213 kb on + strand, within IAI47_20140 at 261.214 kb on - strand, within IAI47_20140 at 261.214 kb on - strand, within IAI47_20140 at 261.214 kb on - strand, within IAI47_20140 at 261.214 kb on - strand, within IAI47_20140 at 261.231 kb on + strand, within IAI47_20140 at 261.232 kb on - strand, within IAI47_20140 at 261.236 kb on + strand, within IAI47_20140
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 2 remove 258,887 + +0.9 258,888 - -0.6 258,888 - +0.1 258,916 + IAI47_20125 0.11 +0.2 258,916 + IAI47_20125 0.11 -0.9 258,916 + IAI47_20125 0.11 +1.2 259,042 + IAI47_20125 0.43 +0.4 259,042 + IAI47_20125 0.43 -0.5 259,042 + IAI47_20125 0.43 +0.0 259,042 + IAI47_20125 0.43 -0.2 259,043 - IAI47_20125 0.43 -1.2 259,043 - IAI47_20125 0.43 +0.4 259,066 + IAI47_20125 0.49 +0.6 259,067 - IAI47_20125 0.49 -1.4 259,067 - IAI47_20125 0.49 +0.5 259,067 - IAI47_20125 0.49 -2.1 259,067 - IAI47_20125 0.49 +0.4 259,067 - IAI47_20125 0.49 +0.8 259,070 + IAI47_20125 0.50 +1.9 259,070 + IAI47_20125 0.50 -0.8 259,070 + IAI47_20125 0.50 +0.7 259,071 - IAI47_20125 0.50 +0.1 259,125 + IAI47_20125 0.64 -0.3 259,125 + IAI47_20125 0.64 +0.2 259,145 + IAI47_20125 0.69 +2.4 259,146 - IAI47_20125 0.69 +0.6 259,146 - IAI47_20125 0.69 +0.7 259,146 - IAI47_20125 0.69 -0.2 259,171 + IAI47_20125 0.75 -0.5 259,171 + IAI47_20125 0.75 +0.0 259,171 + IAI47_20125 0.75 -0.2 259,172 - IAI47_20125 0.76 +0.5 259,172 - IAI47_20125 0.76 -0.3 259,212 + IAI47_20125 0.86 -0.1 259,212 + IAI47_20125 0.86 -0.2 259,213 - IAI47_20125 0.86 +0.1 259,221 - IAI47_20125 0.88 -0.8 259,250 + -0.1 259,250 + +1.2 259,251 - -0.3 259,251 - -0.2 259,314 + +0.4 259,315 - +0.5 259,315 - +1.4 259,316 + -0.5 259,316 + -1.0 259,317 - +0.8 259,317 - -0.4 259,400 - IAI47_20130 0.18 +0.8 259,433 + IAI47_20130 0.25 -0.0 259,433 + IAI47_20130 0.25 -0.6 259,434 - IAI47_20130 0.26 -0.4 259,470 + IAI47_20130 0.33 -0.4 259,470 + IAI47_20130 0.33 +0.2 259,471 - IAI47_20130 0.33 +0.3 259,471 - IAI47_20130 0.33 +0.8 259,471 - IAI47_20130 0.33 -0.3 259,471 - IAI47_20130 0.33 -1.0 259,480 - IAI47_20130 0.35 +0.0 259,509 + IAI47_20130 0.41 +1.7 259,510 - IAI47_20130 0.42 +0.4 259,510 - IAI47_20130 0.42 -0.6 259,558 + IAI47_20130 0.52 -1.7 259,558 + IAI47_20130 0.52 +0.4 259,559 - IAI47_20130 0.52 -0.2 259,559 - IAI47_20130 0.52 +1.2 259,646 - IAI47_20130 0.70 -0.9 259,668 + IAI47_20130 0.75 +0.5 259,669 - IAI47_20130 0.75 +0.0 259,801 - -0.2 259,801 - -0.2 259,909 + IAI47_20135 0.16 +1.6 259,909 + IAI47_20135 0.16 -0.5 259,909 + IAI47_20135 0.16 -0.5 259,909 + IAI47_20135 0.16 -0.8 259,910 - IAI47_20135 0.17 -0.2 259,910 - IAI47_20135 0.17 -1.4 259,911 + IAI47_20135 0.17 -0.7 259,911 + IAI47_20135 0.17 -0.8 259,911 + IAI47_20135 0.17 +0.8 259,911 + IAI47_20135 0.17 -0.4 259,911 + IAI47_20135 0.17 +0.3 259,911 + IAI47_20135 0.17 -1.4 259,912 - IAI47_20135 0.17 -0.2 259,912 - IAI47_20135 0.17 -1.4 259,912 - IAI47_20135 0.17 -0.6 259,912 - IAI47_20135 0.17 -0.8 259,912 - IAI47_20135 0.17 -1.1 259,912 - IAI47_20135 0.17 -0.2 259,912 - IAI47_20135 0.17 -0.2 259,912 - IAI47_20135 0.17 +2.4 259,912 - IAI47_20135 0.17 +0.8 259,945 + IAI47_20135 0.25 -0.5 259,946 - IAI47_20135 0.25 -1.5 260,043 + IAI47_20135 0.47 -2.1 260,043 + IAI47_20135 0.47 +2.8 260,043 + IAI47_20135 0.47 -0.8 260,043 + IAI47_20135 0.47 -1.0 260,043 + IAI47_20135 0.47 -0.7 260,043 + IAI47_20135 0.47 -0.2 260,043 + IAI47_20135 0.47 -1.0 260,044 - IAI47_20135 0.47 -0.2 260,044 - IAI47_20135 0.47 -1.8 260,044 - IAI47_20135 0.47 -1.4 260,044 - IAI47_20135 0.47 +0.3 260,057 + IAI47_20135 0.50 +0.6 260,057 + IAI47_20135 0.50 -1.4 260,057 + IAI47_20135 0.50 +0.7 260,057 + IAI47_20135 0.50 +2.4 260,058 - IAI47_20135 0.51 -2.4 260,058 - IAI47_20135 0.51 -0.2 260,058 - IAI47_20135 0.51 +0.8 260,058 - IAI47_20135 0.51 -1.5 260,120 + IAI47_20135 0.65 +0.1 260,166 + IAI47_20135 0.75 -0.5 260,166 + IAI47_20135 0.75 +1.1 260,166 + IAI47_20135 0.75 -1.5 260,167 - IAI47_20135 0.76 +1.2 260,167 - IAI47_20135 0.76 -0.4 260,245 + +0.4 260,245 + -1.2 260,246 - -1.0 260,248 + +0.2 260,248 + +1.8 260,249 - -1.0 260,249 - +1.0 260,286 + +1.6 260,286 + -1.2 260,286 + -0.2 260,286 + -1.5 260,287 - -0.7 260,288 + +0.2 260,288 + -0.2 260,289 - +0.1 260,289 - +1.2 260,289 - -1.2 260,384 + +0.8 260,384 + -0.5 260,384 + -1.4 260,384 + +0.8 260,384 + -0.4 260,384 + -0.8 260,384 + +0.3 260,385 - -0.4 260,385 - +1.1 260,385 - -0.2 260,385 - +0.9 260,386 + -0.2 260,386 + +1.8 260,386 + -1.3 260,386 + +0.8 260,392 - -0.4 260,392 - -0.8 260,397 - -0.2 260,423 + -1.2 260,423 + +0.8 260,423 + -0.6 260,424 - -1.4 260,424 - +1.7 260,425 + -0.8 260,429 + -0.8 260,429 + -0.8 260,429 + +0.4 260,429 + +0.6 260,429 + -0.2 260,430 - -1.0 260,430 - +0.1 260,430 - +1.8 260,457 + +0.6 260,457 + -1.2 260,457 + -1.6 260,457 + -0.2 260,457 + -0.6 260,457 + +0.1 260,457 + +0.8 260,458 - -0.6 260,458 - -0.6 260,458 - +0.4 260,458 - -0.2 260,458 - +0.1 260,458 - -0.4 260,458 - +0.5 260,509 + +0.3 260,509 + -0.6 260,510 - +1.4 260,531 + -1.2 260,531 + +0.8 260,532 - +0.1 260,548 - +0.8 260,562 - -1.0 260,602 - -0.0 260,613 - +0.4 260,613 - +3.6 260,668 + +1.4 260,669 - +0.5 260,810 + IAI47_20140 0.21 -0.5 260,810 + IAI47_20140 0.21 +0.4 260,810 + IAI47_20140 0.21 -0.9 260,810 + IAI47_20140 0.21 +0.5 260,810 + IAI47_20140 0.21 +0.8 260,811 - IAI47_20140 0.21 +0.2 260,811 - IAI47_20140 0.21 +0.4 260,823 + IAI47_20140 0.23 +2.6 260,824 - IAI47_20140 0.23 +0.2 260,824 - IAI47_20140 0.23 +0.1 260,824 - IAI47_20140 0.23 -0.4 260,853 + IAI47_20140 0.27 -1.2 261,074 + IAI47_20140 0.58 +0.9 261,074 + IAI47_20140 0.58 -0.4 261,180 + IAI47_20140 0.73 +1.2 261,180 + IAI47_20140 0.73 -0.2 261,180 + IAI47_20140 0.73 -1.4 261,180 + IAI47_20140 0.73 -0.2 261,180 + IAI47_20140 0.73 +0.3 261,180 + IAI47_20140 0.73 +0.5 261,181 - IAI47_20140 0.73 -0.4 261,181 - IAI47_20140 0.73 -0.9 261,181 - IAI47_20140 0.73 +0.5 261,181 - IAI47_20140 0.73 -1.6 261,181 - IAI47_20140 0.73 +0.7 261,181 - IAI47_20140 0.73 +0.4 261,181 - IAI47_20140 0.73 +1.2 261,200 + IAI47_20140 0.76 -0.6 261,201 - IAI47_20140 0.76 +0.1 261,213 + IAI47_20140 0.78 -0.3 261,213 + IAI47_20140 0.78 -0.6 261,213 + IAI47_20140 0.78 -0.3 261,214 - IAI47_20140 0.78 +0.1 261,214 - IAI47_20140 0.78 -1.2 261,214 - IAI47_20140 0.78 -0.2 261,214 - IAI47_20140 0.78 +0.5 261,231 + IAI47_20140 0.81 -0.4 261,232 - IAI47_20140 0.81 +0.0 261,236 + IAI47_20140 0.81 +1.4
Or see this region's nucleotide sequence