Strain Fitness in Pantoea sp. MT58 around IAI47_19415

Experiment: Ying_AminoAcid20 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 2
108,648	+		IAI47_19410	0.12	+0.0
108,677	+		IAI47_19410	0.15	+0.1
108,678	-		IAI47_19410	0.15	+0.4
108,678	-		IAI47_19410	0.15	-1.6
108,678	-		IAI47_19410	0.15	+0.8
108,680	+		IAI47_19410	0.15	-0.8
108,680	+		IAI47_19410	0.15	-0.2
108,680	+		IAI47_19410	0.15	+2.0
108,680	+		IAI47_19410	0.15	+1.6
108,680	+		IAI47_19410	0.15	+0.3
108,681	-		IAI47_19410	0.15	-1.2
108,681	-		IAI47_19410	0.15	-0.2
108,681	-		IAI47_19410	0.15	-0.7
108,681	-		IAI47_19410	0.15	+0.6
108,699	+		IAI47_19410	0.17	-0.8
108,715	+		IAI47_19410	0.18	-0.7
108,715	+		IAI47_19410	0.18	+0.3
108,716	-		IAI47_19410	0.18	-1.3
108,769	+		IAI47_19410	0.23	-1.2
108,770	-		IAI47_19410	0.23	+0.3
108,770	-		IAI47_19410	0.23	+1.2
108,770	-		IAI47_19410	0.23	-1.0
108,866	-		IAI47_19410	0.32	+1.1
108,873	+		IAI47_19410	0.33	+1.1
108,873	+		IAI47_19410	0.33	-0.2
108,874	-		IAI47_19410	0.33	+0.3
108,948	-		IAI47_19410	0.40	+0.8
109,111	-		IAI47_19410	0.54	+0.3
109,111	-		IAI47_19410	0.54	-2.6
109,120	+		IAI47_19410	0.55	-1.0
109,120	+		IAI47_19410	0.55	+1.7
109,151	+		IAI47_19410	0.58	-2.2
109,152	-		IAI47_19410	0.58	-0.7
109,152	-		IAI47_19410	0.58	-1.5
109,163	+		IAI47_19410	0.59	+0.4
109,163	+		IAI47_19410	0.59	-1.9
109,163	+		IAI47_19410	0.59	-0.7
109,164	-		IAI47_19410	0.59	-0.4
109,190	+		IAI47_19410	0.62	-0.2
109,257	-		IAI47_19410	0.68	-1.2
109,373	-		IAI47_19410	0.78	-0.0
109,373	-		IAI47_19410	0.78	-0.7
109,426	-		IAI47_19410	0.83	-0.2
109,426	-		IAI47_19410	0.83	-0.4
109,456	+		IAI47_19410	0.86	+0.1
109,457	-		IAI47_19410	0.86	-0.6
109,457	-		IAI47_19410	0.86	+0.2
109,526	-				-0.4
109,526	-				-0.4
109,526	-				-0.3
109,549	+				-0.2
109,550	-				-1.0
109,564	+				-0.4
109,568	-				+1.8
109,589	+				+0.7
109,665	+				+1.0
109,723	+				-0.2
109,723	+				+0.1
109,723	+				-0.4
109,723	+				+0.8
109,723	+				-0.3
109,723	+				-0.2
109,724	-				-1.1
109,724	-				+0.1
109,724	-				-1.2
109,724	-				+0.8
109,724	-				-0.7
109,726	+				+1.4
109,727	-				+0.2
109,727	-				-0.2
109,746	-				+0.3
109,748	+				-0.3
109,748	+				-0.5
109,748	+				+0.2
109,748	+				-0.2
109,749	-				+1.3
109,749	-				+1.1
109,749	-				+0.3
109,749	-				+0.1
109,749	-				-0.5
109,822	+				-1.6
109,823	-				+0.0
109,823	-				+0.2
109,823	-				+0.0
109,823	-				-0.7
109,873	+		IAI47_19415	0.11	+0.9
109,873	+		IAI47_19415	0.11	+2.6
109,873	+		IAI47_19415	0.11	+0.8
109,940	-		IAI47_19415	0.14	+0.6
109,940	-		IAI47_19415	0.14	+0.4
109,997	+		IAI47_19415	0.17	+0.8
110,029	+		IAI47_19415	0.18	+0.1
110,029	+		IAI47_19415	0.18	-0.5
110,029	+		IAI47_19415	0.18	+0.6
110,029	+		IAI47_19415	0.18	-0.3
110,029	+		IAI47_19415	0.18	-0.2
110,029	+		IAI47_19415	0.18	-0.2
110,029	+		IAI47_19415	0.18	+0.3
110,029	+		IAI47_19415	0.18	+0.1
110,029	+		IAI47_19415	0.18	-0.2
110,030	-		IAI47_19415	0.18	+0.8
110,030	-		IAI47_19415	0.18	+0.8
110,030	-		IAI47_19415	0.18	+0.1
110,030	-		IAI47_19415	0.18	+0.8
110,030	-		IAI47_19415	0.18	-0.7
110,030	-		IAI47_19415	0.18	-2.0
110,035	+		IAI47_19415	0.18	+0.8
110,035	+		IAI47_19415	0.18	-1.2
110,035	+		IAI47_19415	0.18	+1.1
110,035	+		IAI47_19415	0.18	+1.6
110,035	+		IAI47_19415	0.18	+1.3
110,035	+		IAI47_19415	0.18	+0.8
110,035	+		IAI47_19415	0.18	-2.3
110,036	-		IAI47_19415	0.18	-1.5
110,036	-		IAI47_19415	0.18	-0.0
110,036	-		IAI47_19415	0.18	+0.5
110,108	+		IAI47_19415	0.22	+0.0
110,109	-		IAI47_19415	0.22	+1.0
110,109	-		IAI47_19415	0.22	+2.2
110,109	-		IAI47_19415	0.22	+0.1
110,133	-		IAI47_19415	0.23	+0.1
110,133	-		IAI47_19415	0.23	-0.5
110,135	+		IAI47_19415	0.23	+1.6
110,136	-		IAI47_19415	0.23	+0.1
110,136	-		IAI47_19415	0.23	-0.2
110,136	-		IAI47_19415	0.23	+1.4
110,136	-		IAI47_19415	0.23	+0.3
110,308	+		IAI47_19415	0.31	-0.0
110,308	+		IAI47_19415	0.31	-0.0
110,308	+		IAI47_19415	0.31	-0.2
110,309	-		IAI47_19415	0.31	-0.3
110,309	-		IAI47_19415	0.31	-0.5
110,328	-		IAI47_19415	0.32	-0.3
110,335	+		IAI47_19415	0.33	-0.7
110,335	+		IAI47_19415	0.33	-1.0
110,336	-		IAI47_19415	0.33	+0.4
110,336	-		IAI47_19415	0.33	+0.2
110,336	-		IAI47_19415	0.33	+1.7
110,363	+		IAI47_19415	0.34	+0.5
110,363	+		IAI47_19415	0.34	+0.8
110,363	+		IAI47_19415	0.34	+1.4
110,363	+		IAI47_19415	0.34	-0.1
110,364	-		IAI47_19415	0.34	-0.2
110,364	-		IAI47_19415	0.34	+0.1
110,364	-		IAI47_19415	0.34	+0.8
110,425	+		IAI47_19415	0.37	-1.0
110,425	+		IAI47_19415	0.37	+0.6
110,426	-		IAI47_19415	0.37	-0.6
110,426	-		IAI47_19415	0.37	-1.0
110,486	+		IAI47_19415	0.40	-1.5
110,486	+		IAI47_19415	0.40	-0.2
110,491	+		IAI47_19415	0.40	+0.6
110,492	-				-0.5
110,492	-		IAI47_19415	0.40	-0.4
110,505	-		IAI47_19415	0.41	+2.6
110,522	+		IAI47_19415	0.41	-0.6
110,523	-		IAI47_19415	0.41	+0.4
110,526	-		IAI47_19415	0.42	-0.6
110,578	+		IAI47_19415	0.44	-0.2
110,578	+		IAI47_19415	0.44	+0.2
110,578	+		IAI47_19415	0.44	-0.6
110,578	+		IAI47_19415	0.44	+0.8
110,578	+		IAI47_19415	0.44	-0.5
110,579	-		IAI47_19415	0.44	-0.7
110,579	-		IAI47_19415	0.44	+0.4
110,593	+		IAI47_19415	0.45	-0.3
110,594	-		IAI47_19415	0.45	-0.7
110,594	-		IAI47_19415	0.45	-0.2
110,623	+		IAI47_19415	0.46	+0.8
110,624	-		IAI47_19415	0.46	-0.8
110,638	+		IAI47_19415	0.47	+0.2
110,639	-		IAI47_19415	0.47	+1.2
110,639	-		IAI47_19415	0.47	-0.2
110,639	-		IAI47_19415	0.47	+0.7
110,639	-		IAI47_19415	0.47	+1.1
110,656	+		IAI47_19415	0.48	-1.2
110,657	-		IAI47_19415	0.48	-1.0
110,657	-		IAI47_19415	0.48	-0.6
110,724	+		IAI47_19415	0.51	+0.6
110,724	+		IAI47_19415	0.51	-0.2
110,724	+		IAI47_19415	0.51	-0.7
110,724	+		IAI47_19415	0.51	+1.6
110,724	+		IAI47_19415	0.51	-0.5
110,724	+		IAI47_19415	0.51	+0.4
110,725	-		IAI47_19415	0.51	-0.7
110,725	-		IAI47_19415	0.51	+0.8
110,725	-		IAI47_19415	0.51	+0.3
110,725	-		IAI47_19415	0.51	-0.4
110,725	-		IAI47_19415	0.51	-0.2
110,728	+		IAI47_19415	0.51	+0.0
110,728	+		IAI47_19415	0.51	-1.9
110,728	+		IAI47_19415	0.51	+1.1
110,728	+		IAI47_19415	0.51	-0.5
110,728	+		IAI47_19415	0.51	+0.3
110,729	-		IAI47_19415	0.51	+0.8
110,729	-		IAI47_19415	0.51	-0.7
110,729	-		IAI47_19415	0.51	-2.3
110,819	+		IAI47_19415	0.55	-0.5
110,819	+		IAI47_19415	0.55	-0.2
110,820	-		IAI47_19415	0.55	+1.2
110,820	-		IAI47_19415	0.55	-1.2
110,820	-		IAI47_19415	0.55	-0.7
110,820	-		IAI47_19415	0.55	-1.6
110,820	-		IAI47_19415	0.55	+0.6
110,822	+		IAI47_19415	0.56	+0.4
110,822	+		IAI47_19415	0.56	-0.0
110,822	+		IAI47_19415	0.56	+0.3
110,822	+		IAI47_19415	0.56	-0.3
110,822	+		IAI47_19415	0.56	-1.0
110,822	+		IAI47_19415	0.56	+0.5
110,822	+		IAI47_19415	0.56	+2.4
110,822	+		IAI47_19415	0.56	-0.7
110,823	-		IAI47_19415	0.56	-0.5
110,823	-		IAI47_19415	0.56	-0.4
110,823	-		IAI47_19415	0.56	+1.1
110,823	-		IAI47_19415	0.56	+0.3
110,827	+		IAI47_19415	0.56	+0.1
110,828	-		IAI47_19415	0.56	-0.5
110,828	-		IAI47_19415	0.56	-0.9
110,828	-		IAI47_19415	0.56	-2.5
110,828	-		IAI47_19415	0.56	+0.4
110,853	+		IAI47_19415	0.57	+0.3
110,876	+		IAI47_19415	0.58	-0.7
110,890	+		IAI47_19415	0.59	-0.2
110,890	+		IAI47_19415	0.59	-0.3
110,891	-		IAI47_19415	0.59	-0.7
110,891	-		IAI47_19415	0.59	-0.2
110,891	-		IAI47_19415	0.59	+0.4
110,912	+		IAI47_19415	0.60	+0.0
110,912	+		IAI47_19415	0.60	+0.2
110,912	+		IAI47_19415	0.60	-0.2
110,930	+		IAI47_19415	0.61	+0.8
110,930	+		IAI47_19415	0.61	-0.6
110,930	+		IAI47_19415	0.61	-0.3
110,931	-		IAI47_19415	0.61	+1.0
110,936	+		IAI47_19415	0.61	+1.8
110,937	-		IAI47_19415	0.61	+2.2
110,963	+		IAI47_19415	0.62	+0.3
110,964	-		IAI47_19415	0.62	-1.2
110,964	-		IAI47_19415	0.62	+0.4
111,004	+		IAI47_19415	0.64	+0.8
111,004	+		IAI47_19415	0.64	-1.0
111,011	+		IAI47_19415	0.64	-0.3
111,011	+		IAI47_19415	0.64	-0.2
111,011	+		IAI47_19415	0.64	-1.2
111,012	-		IAI47_19415	0.64	-0.7
111,016	+		IAI47_19415	0.65	-0.6
111,017	-		IAI47_19415	0.65	-0.5
111,017	-		IAI47_19415	0.65	-0.4
111,017	-		IAI47_19415	0.65	-1.7
111,023	-		IAI47_19415	0.65	+0.8
111,023	-		IAI47_19415	0.65	+0.0
111,031	+		IAI47_19415	0.65	-0.2
111,031	+		IAI47_19415	0.65	-0.5
111,032	-		IAI47_19415	0.65	+0.0
111,032	-		IAI47_19415	0.65	+0.1
111,032	-		IAI47_19415	0.65	+0.3
111,032	-		IAI47_19415	0.65	-0.4
111,084	+		IAI47_19415	0.68	-0.3
111,084	+		IAI47_19415	0.68	+1.2
111,084	+		IAI47_19415	0.68	-0.7
111,085	-		IAI47_19415	0.68	+1.3
111,085	-		IAI47_19415	0.68	-0.4
111,085	-		IAI47_19415	0.68	-0.2
111,085	-		IAI47_19415	0.68	+0.3
111,085	-		IAI47_19415	0.68	-0.4
111,085	-		IAI47_19415	0.68	-0.5
111,118	+		IAI47_19415	0.69	+0.0
111,119	-		IAI47_19415	0.70	-1.4
111,217	+		IAI47_19415	0.74	+0.2
111,217	+		IAI47_19415	0.74	+0.7
111,218	-		IAI47_19415	0.74	-0.4
111,245	+		IAI47_19415	0.75	-2.0
111,245	+		IAI47_19415	0.75	+1.6
111,245	+		IAI47_19415	0.75	-0.2
111,246	-		IAI47_19415	0.76	+0.7
111,246	-		IAI47_19415	0.76	+0.4
111,246	-		IAI47_19415	0.76	-0.4
111,246	-		IAI47_19415	0.76	+0.4
111,246	-		IAI47_19415	0.76	-0.2
111,246	-		IAI47_19415	0.76	-0.2
111,246	-		IAI47_19415	0.76	-0.6
111,246	-		IAI47_19415	0.76	-0.2
111,247	+		IAI47_19415	0.76	-0.1
111,247	+		IAI47_19415	0.76	+0.1
111,247	+		IAI47_19415	0.76	+1.3
111,247	+		IAI47_19415	0.76	-0.6
111,247	+		IAI47_19415	0.76	+1.3
111,247	+		IAI47_19415	0.76	-1.2
111,248	-		IAI47_19415	0.76	+0.3
111,248	-		IAI47_19415	0.76	+0.7
111,301	+		IAI47_19415	0.78	-0.9
111,301	+		IAI47_19415	0.78	+1.4
111,392	-		IAI47_19415	0.82	+0.2
111,616	+				+0.6
111,617	-				-1.3
111,617	-				+0.3
111,653	+				-0.7
111,695	+				+0.5
111,695	+				-0.6
111,695	+				-1.3
111,695	+				+0.1
111,695	+				-1.3
111,695	+				-0.2
111,695	+				-0.6
111,696	-				+0.3
111,696	-				-0.5
111,696	-				-1.2
111,696	-				-0.8
111,696	-				+0.1
111,781	+				+0.3
111,781	+				+0.8
111,782	-				+1.5
111,800	+				+0.5
111,801	-				+0.8
111,803	+				-0.2
111,803	+				-0.7
111,804	-				-1.7
111,804	-				+0.3
111,855	+				+1.0
111,855	+				-0.6
111,855	+				+1.3
111,855	+				+1.4
111,855	+				-0.0
111,855	+				-1.5
111,856	-				-0.2
111,856	-				-1.5
111,867	+				-1.3
111,867	+				-1.2
111,868	-				-0.4
111,868	-				+0.3
111,868	-				-0.3
111,963	-				-0.2
111,967	+				+0.2
111,996	-				-0.0
112,089	+				-0.9
112,089	+				+1.3
112,090	-				+0.4
112,090	-				+0.4
112,137	-				+2.2
112,137	-				+2.0
112,204	+				-0.7
112,204	+				+1.8
112,205	-				+0.3
112,205	-				+0.3
112,205	-				-0.5
112,214	+				-1.2
112,215	-				+0.3
112,215	-				-0.3
112,215	-				+1.5
112,338	+		IAI47_19420	0.11	-0.7
112,338	+		IAI47_19420	0.11	+0.8
112,338	+		IAI47_19420	0.11	+0.1
112,340	+		IAI47_19420	0.12	+0.1
112,340	+		IAI47_19420	0.12	+0.3
112,341	-		IAI47_19420	0.12	-1.0
112,393	+		IAI47_19420	0.18	+1.3
112,449	-		IAI47_19420	0.24	+0.3
112,479	-		IAI47_19420	0.27	+0.7
112,514	+		IAI47_19420	0.31	+0.5
112,514	+		IAI47_19420	0.31	+0.4
112,514	+		IAI47_19420	0.31	-0.7
112,514	+		IAI47_19420	0.31	+0.8
112,514	+		IAI47_19420	0.31	+0.0
112,514	+		IAI47_19420	0.31	-0.7
112,515	-		IAI47_19420	0.31	-0.2
112,515	-		IAI47_19420	0.31	+1.3
112,515	-		IAI47_19420	0.31	-0.9
112,515	-		IAI47_19420	0.31	+0.8
112,515	-		IAI47_19420	0.31	+1.4
112,590	+		IAI47_19420	0.40	-1.1
112,590	+		IAI47_19420	0.40	+0.4
112,590	+		IAI47_19420	0.40	+0.2
112,591	-		IAI47_19420	0.40	-0.5
112,619	+		IAI47_19420	0.43	-0.2
112,620	-		IAI47_19420	0.43	-0.4
112,677	-		IAI47_19420	0.49	+0.5
112,688	+		IAI47_19420	0.51	-0.4
112,688	+		IAI47_19420	0.51	-0.2
112,688	+		IAI47_19420	0.51	+0.4
112,689	-		IAI47_19420	0.51	-0.0
112,713	+		IAI47_19420	0.54	+0.5
112,713	+		IAI47_19420	0.54	+0.6
112,729	+		IAI47_19420	0.55	+0.3
112,729	+		IAI47_19420	0.55	+0.3
112,730	-		IAI47_19420	0.55	-0.4
112,736	+		IAI47_19420	0.56	-1.2