Strain Fitness in Pantoea sp. MT58 around IAI47_18435

Experiment: Ying_AminoAcid20 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 2
3,924,108	+				+1.7
3,924,108	+				-0.1
3,924,108	+				-0.6
3,924,109	-				+1.9
3,924,109	-				-0.5
3,924,109	-				+0.9
3,924,128	+				-0.6
3,924,128	+				-2.0
3,924,128	+				-1.6
3,924,128	+				+1.0
3,924,128	+				+1.4
3,924,128	+				-0.7
3,924,128	+				-0.6
3,924,128	+				-0.7
3,924,128	+				-1.6
3,924,128	+				-1.1
3,924,128	+				-1.4
3,924,129	-				-0.1
3,924,129	-				+0.9
3,924,129	-				-0.5
3,924,129	-				-0.6
3,924,129	-				-0.1
3,924,129	-				+0.9
3,924,129	-				+0.3
3,924,129	-				+0.0
3,924,129	-				-0.8
3,924,208	+				+0.1
3,924,208	+				-1.3
3,924,208	+				+0.4
3,924,208	+				-2.5
3,924,208	+				-1.0
3,924,208	+				-2.1
3,924,208	+				-1.3
3,924,208	+				-0.1
3,924,209	-				-0.4
3,924,209	-				+1.3
3,924,209	-				-0.5
3,924,209	-				-1.4
3,924,209	-				-1.1
3,924,219	-				-2.3
3,924,289	+		IAI47_18435	0.14	+0.3
3,924,290	-		IAI47_18435	0.14	-1.1
3,924,290	-		IAI47_18435	0.14	+0.4
3,924,290	-		IAI47_18435	0.14	+0.9
3,924,290	-		IAI47_18435	0.14	-0.1
3,924,290	-		IAI47_18435	0.14	-0.0
3,924,290	-		IAI47_18435	0.14	-1.1
3,924,290	-		IAI47_18435	0.14	-0.6
3,924,291	+		IAI47_18435	0.14	-0.3
3,924,291	+		IAI47_18435	0.14	-0.4
3,924,291	+		IAI47_18435	0.14	-1.4
3,924,291	+		IAI47_18435	0.14	-2.3
3,924,291	+		IAI47_18435	0.14	+0.1
3,924,291	+		IAI47_18435	0.14	-2.0
3,924,291	+		IAI47_18435	0.14	-0.9
3,924,291	+		IAI47_18435	0.14	+0.3
3,924,291	+		IAI47_18435	0.14	+0.6
3,924,292	-		IAI47_18435	0.14	+0.6
3,924,292	-		IAI47_18435	0.14	-1.5
3,924,292	-		IAI47_18435	0.14	+0.3
3,924,296	+		IAI47_18435	0.15	+0.1
3,924,319	+		IAI47_18435	0.17	-1.7
3,924,355	+		IAI47_18435	0.20	+0.4
3,924,356	-		IAI47_18435	0.20	-1.1
3,924,409	+		IAI47_18435	0.25	-0.4
3,924,409	+		IAI47_18435	0.25	+0.1
3,924,409	+		IAI47_18435	0.25	-1.2
3,924,409	+		IAI47_18435	0.25	-0.7
3,924,409	+		IAI47_18435	0.25	-1.0
3,924,409	+		IAI47_18435	0.25	+2.1
3,924,409	+		IAI47_18435	0.25	-1.1
3,924,409	+		IAI47_18435	0.25	-0.1
3,924,409	+		IAI47_18435	0.25	-0.1
3,924,410	-		IAI47_18435	0.25	+0.6
3,924,410	-		IAI47_18435	0.25	-0.9
3,924,410	-		IAI47_18435	0.25	+0.0
3,924,410	-		IAI47_18435	0.25	+0.9
3,924,410	-		IAI47_18435	0.25	-1.3
3,924,410	-		IAI47_18435	0.25	+1.7
3,924,410	-		IAI47_18435	0.25	+0.3
3,924,410	-		IAI47_18435	0.25	-1.3
3,924,410	-		IAI47_18435	0.25	-0.1
3,924,410	-		IAI47_18435	0.25	-1.3
3,924,413	+		IAI47_18435	0.25	+0.9
3,924,493	+		IAI47_18435	0.32	-1.5
3,924,546	+		IAI47_18435	0.37	-0.7
3,924,546	+		IAI47_18435	0.37	-0.0
3,924,546	+		IAI47_18435	0.37	+0.5
3,924,546	+		IAI47_18435	0.37	+0.6
3,924,546	+		IAI47_18435	0.37	+0.2
3,924,547	-		IAI47_18435	0.37	-0.1
3,924,689	+		IAI47_18435	0.49	-0.6
3,924,689	+		IAI47_18435	0.49	+0.9
3,924,724	-		IAI47_18435	0.52	-0.7
3,924,761	+		IAI47_18435	0.56	+0.9
3,924,761	+		IAI47_18435	0.56	-1.3
3,924,899	+		IAI47_18435	0.68	-0.1
3,924,899	+		IAI47_18435	0.68	+0.6
3,924,902	+		IAI47_18435	0.68	-0.1
3,924,958	+		IAI47_18435	0.73	+1.1
3,924,958	+		IAI47_18435	0.73	-1.4
3,924,958	+		IAI47_18435	0.73	-0.4
3,924,958	+		IAI47_18435	0.73	-1.1
3,924,958	+		IAI47_18435	0.73	+0.3
3,924,958	+		IAI47_18435	0.73	+0.4
3,924,958	+		IAI47_18435	0.73	+0.2
3,924,958	+		IAI47_18435	0.73	-0.3
3,924,958	+		IAI47_18435	0.73	+0.1
3,924,958	+		IAI47_18435	0.73	+0.3
3,924,958	+		IAI47_18435	0.73	-0.1
3,924,958	+		IAI47_18435	0.73	+0.9
3,924,958	+		IAI47_18435	0.73	-2.0
3,924,958	+		IAI47_18435	0.73	+1.1
3,924,958	+		IAI47_18435	0.73	-1.3
3,924,958	+		IAI47_18435	0.73	+0.8
3,924,958	+		IAI47_18435	0.73	-0.1
3,924,959	-		IAI47_18435	0.73	+0.6
3,924,959	-		IAI47_18435	0.73	-0.3
3,924,959	-		IAI47_18435	0.73	+1.6
3,924,959	-		IAI47_18435	0.73	+0.2
3,924,959	-		IAI47_18435	0.73	+0.6
3,924,959	-		IAI47_18435	0.73	-0.4
3,924,959	-		IAI47_18435	0.73	-0.4
3,924,959	-		IAI47_18435	0.73	-1.1
3,924,959	-		IAI47_18435	0.73	+0.9
3,924,959	-		IAI47_18435	0.73	-1.4
3,924,959	-		IAI47_18435	0.73	+0.5
3,924,959	-		IAI47_18435	0.73	+0.5
3,924,959	-		IAI47_18435	0.73	-0.7
3,924,959	-		IAI47_18435	0.73	-0.7
3,924,959	-		IAI47_18435	0.73	-0.3
3,924,959	-		IAI47_18435	0.73	-2.1
3,924,959	-		IAI47_18435	0.73	-1.0
3,924,959	-		IAI47_18435	0.73	-2.0
3,924,960	+		IAI47_18435	0.73	+1.0
3,924,960	+		IAI47_18435	0.73	-1.9
3,924,960	+		IAI47_18435	0.73	+1.2
3,924,960	+		IAI47_18435	0.73	-0.1
3,924,961	-		IAI47_18435	0.73	-0.5
3,924,961	-		IAI47_18435	0.73	+1.7
3,924,961	-		IAI47_18435	0.73	+0.2
3,924,961	-		IAI47_18435	0.73	+0.7
3,924,961	-		IAI47_18435	0.73	+0.9
3,924,961	-		IAI47_18435	0.73	-0.0
3,924,961	-		IAI47_18435	0.73	-0.1
3,924,961	-		IAI47_18435	0.73	-0.1
3,924,961	-		IAI47_18435	0.73	+0.1
3,924,961	-		IAI47_18435	0.73	-1.1
3,924,961	-		IAI47_18435	0.73	+0.7
3,924,961	-		IAI47_18435	0.73	-1.7
3,925,032	+		IAI47_18435	0.80	-0.3
3,925,032	+		IAI47_18435	0.80	-1.1
3,925,033	-		IAI47_18435	0.80	+0.3
3,925,033	-		IAI47_18435	0.80	-1.1
3,925,034	+		IAI47_18435	0.80	-3.3
3,925,035	-		IAI47_18435	0.80	-0.9
3,925,043	+		IAI47_18435	0.81	-0.1
3,925,043	+		IAI47_18435	0.81	-0.5
3,925,044	-		IAI47_18435	0.81	+1.3
3,925,044	-		IAI47_18435	0.81	+0.3
3,925,049	+		IAI47_18435	0.81	-1.0
3,925,050	-		IAI47_18435	0.81	-1.1
3,925,077	+		IAI47_18435	0.84	+1.4
3,925,077	+		IAI47_18435	0.84	+0.9
3,925,078	-		IAI47_18435	0.84	+0.9
3,925,085	+		IAI47_18435	0.84	-1.5
3,925,085	+		IAI47_18435	0.84	+0.5
3,925,085	+		IAI47_18435	0.84	-0.8
3,925,085	+		IAI47_18435	0.84	-0.4
3,925,086	-		IAI47_18435	0.84	-0.1
3,925,086	-		IAI47_18435	0.84	+1.6
3,925,086	-		IAI47_18435	0.84	-0.7
3,925,086	-		IAI47_18435	0.84	-0.1
3,925,086	-		IAI47_18435	0.84	-1.5
3,925,086	-		IAI47_18435	0.84	-1.0
3,925,086	-		IAI47_18435	0.84	-0.4
3,925,086	-		IAI47_18435	0.84	-1.1
3,925,086	-		IAI47_18435	0.84	-0.4
3,925,148	+		IAI47_18435	0.90	-0.1
3,925,148	+		IAI47_18435	0.90	+0.3
3,925,148	+		IAI47_18435	0.90	-1.5
3,925,148	+		IAI47_18435	0.90	+0.9
3,925,148	+		IAI47_18435	0.90	-0.6
3,925,148	+		IAI47_18435	0.90	-0.6
3,925,148	+		IAI47_18435	0.90	+0.9
3,925,148	+		IAI47_18435	0.90	-0.1
3,925,149	-				+0.3
3,925,149	-				-0.0
3,925,214	+				-0.7
3,925,215	-				+0.9
3,925,244	+				-0.9
3,925,244	+				+0.1
3,925,245	-				+0.0
3,925,245	-				-1.1
3,925,260	+				+0.3
3,925,260	+				+2.0
3,925,270	+				+0.5
3,925,270	+				-0.1
3,925,270	+				-1.5
3,925,270	+				+0.9
3,925,270	+				-0.1
3,925,270	+				+0.3
3,925,270	+				-1.3
3,925,271	-				-0.7
3,925,271	-				-1.1
3,925,275	+				+1.6
3,925,275	+				+0.4
3,925,275	+				+0.6
3,925,275	+				-0.5
3,925,275	+				+0.6
3,925,275	+				-2.7
3,925,276	-				+0.1
3,925,276	-				-0.1
3,925,276	-				-1.0
3,925,276	-				+0.3
3,925,276	-				+0.0
3,925,276	-				+0.2
3,925,279	+				-1.0
3,925,279	+				+0.0
3,925,279	+				-0.4
3,925,279	+				-1.1
3,925,288	+				-0.7
3,925,343	+				-0.5
3,925,343	+				+0.1
3,925,343	+				+0.5
3,925,344	-				-1.7
3,925,344	-				+0.1
3,925,363	+				-0.3
3,925,372	+				-0.5
3,925,402	+		IAI47_18440	0.11	+0.2
3,925,402	+		IAI47_18440	0.11	+0.6
3,925,405	-		IAI47_18440	0.12	-1.7
3,925,409	-		IAI47_18440	0.12	-1.3
3,925,438	-		IAI47_18440	0.14	-2.1
3,925,502	-		IAI47_18440	0.20	-2.1
3,925,525	+		IAI47_18440	0.22	+0.7
3,925,525	+		IAI47_18440	0.22	-1.7
3,925,525	+		IAI47_18440	0.22	-0.9
3,925,526	-		IAI47_18440	0.22	-0.7
3,925,588	+		IAI47_18440	0.27	-0.1
3,925,626	-		IAI47_18440	0.30	-1.5
3,925,626	-		IAI47_18440	0.30	+0.4
3,925,626	-		IAI47_18440	0.30	+0.1
3,925,626	-		IAI47_18440	0.30	-1.5
3,925,626	-		IAI47_18440	0.30	+0.5
3,925,675	+		IAI47_18440	0.34	+0.9
3,925,676	-		IAI47_18440	0.34	-2.7
3,925,676	-		IAI47_18440	0.34	+0.1
3,925,676	-		IAI47_18440	0.34	-0.2
3,925,717	+		IAI47_18440	0.38	+0.0
3,925,718	-		IAI47_18440	0.38	+1.2
3,925,718	-		IAI47_18440	0.38	-1.1
3,925,718	-		IAI47_18440	0.38	-0.3
3,925,747	+		IAI47_18440	0.40	-0.6
3,925,747	+		IAI47_18440	0.40	-0.4
3,925,747	+		IAI47_18440	0.40	-0.7
3,925,747	+		IAI47_18440	0.40	-0.6
3,925,748	-		IAI47_18440	0.40	-0.4
3,925,748	-		IAI47_18440	0.40	+0.0
3,925,762	+		IAI47_18440	0.42	+0.6
3,925,762	+		IAI47_18440	0.42	+0.6
3,925,762	+		IAI47_18440	0.42	+0.9
3,925,786	+		IAI47_18440	0.44	-0.6
3,925,786	+		IAI47_18440	0.44	-0.3
3,925,786	+		IAI47_18440	0.44	+0.4
3,925,786	+		IAI47_18440	0.44	-1.0
3,925,786	+		IAI47_18440	0.44	-0.7
3,925,786	+		IAI47_18440	0.44	+0.7
3,925,786	+		IAI47_18440	0.44	-0.6
3,925,787	-		IAI47_18440	0.44	-0.6
3,925,787	-		IAI47_18440	0.44	-1.1
3,925,787	-		IAI47_18440	0.44	-0.9
3,925,787	-		IAI47_18440	0.44	-0.5
3,925,787	-		IAI47_18440	0.44	+0.4
3,925,787	-		IAI47_18440	0.44	+1.3
3,925,787	-		IAI47_18440	0.44	+0.4
3,925,853	+		IAI47_18440	0.49	+0.9
3,925,853	+		IAI47_18440	0.49	-0.4
3,925,853	+		IAI47_18440	0.49	-0.6
3,925,853	+		IAI47_18440	0.49	-0.4
3,925,853	+		IAI47_18440	0.49	-0.7
3,925,853	+		IAI47_18440	0.49	+2.1
3,925,854	-		IAI47_18440	0.49	-0.4
3,925,854	-		IAI47_18440	0.49	-2.4
3,925,856	-		IAI47_18440	0.49	-0.3
3,925,856	-		IAI47_18440	0.49	-0.6
3,925,856	-		IAI47_18440	0.49	+0.1
3,925,888	+		IAI47_18440	0.52	-0.1
3,925,889	-		IAI47_18440	0.52	-0.9
3,926,050	+		IAI47_18440	0.66	-0.1
3,926,050	+		IAI47_18440	0.66	-1.1
3,926,117	-		IAI47_18440	0.71	-1.0
3,926,117	-		IAI47_18440	0.71	+0.2
3,926,117	-		IAI47_18440	0.71	-1.0
3,926,117	-		IAI47_18440	0.71	-0.5
3,926,117	-		IAI47_18440	0.71	-0.8
3,926,144	+		IAI47_18440	0.73	-0.7
3,926,144	+		IAI47_18440	0.73	+0.5
3,926,144	+		IAI47_18440	0.73	+0.4
3,926,145	-		IAI47_18440	0.74	+0.4
3,926,160	+		IAI47_18440	0.75	+0.0
3,926,161	-		IAI47_18440	0.75	+0.9
3,926,176	+		IAI47_18440	0.76	-0.5
3,926,176	+		IAI47_18440	0.76	-0.1
3,926,177	-		IAI47_18440	0.76	+0.4
3,926,177	-		IAI47_18440	0.76	+0.5
3,926,214	+		IAI47_18440	0.79	+1.6
3,926,214	+		IAI47_18440	0.79	+0.0
3,926,214	+		IAI47_18440	0.79	+0.2
3,926,214	+		IAI47_18440	0.79	+0.9
3,926,214	+		IAI47_18440	0.79	-1.0
3,926,215	-		IAI47_18440	0.79	-0.1
3,926,227	+		IAI47_18440	0.80	+0.3
3,926,227	+		IAI47_18440	0.80	-0.0
3,926,260	+		IAI47_18440	0.83	-0.5
3,926,261	-		IAI47_18440	0.83	-0.6