Strain Fitness in Pantoea sp. MT58 around IAI47_17895

Experiment: Ying_AminoAcid20 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 2
3,798,629	+		IAI47_17885	0.87	+0.1
3,798,630	-		IAI47_17885	0.87	+0.9
3,798,630	-		IAI47_17885	0.87	-0.1
3,798,630	-		IAI47_17885	0.87	-1.1
3,798,630	-		IAI47_17885	0.87	-0.0
3,798,676	+				-0.3
3,798,676	+				+0.3
3,798,677	-				+0.5
3,798,701	+				+1.3
3,798,701	+				-1.2
3,798,701	+				+0.1
3,798,702	-				+0.9
3,798,702	-				+0.3
3,798,702	-				-0.2
3,798,710	+				+1.5
3,798,740	+				-0.6
3,798,740	+				+0.1
3,798,741	-				-1.5
3,798,741	-				-0.9
3,798,741	-				-0.5
3,798,741	-				-0.5
3,798,741	-				-0.3
3,798,741	-				-0.3
3,798,797	+				+0.9
3,798,798	-				+1.2
3,798,798	-				-0.7
3,798,868	+				+2.0
3,798,868	+				+1.9
3,798,868	+				-0.1
3,798,868	+				+0.1
3,798,868	+				-0.0
3,798,868	+				+0.3
3,798,868	+				-0.4
3,798,869	-				-1.1
3,798,869	-				+1.4
3,798,869	-				+0.5
3,798,869	-				+0.7
3,798,869	-				+1.2
3,798,869	-				-0.5
3,799,540	-				+0.1
3,799,540	-				+3.4
3,799,555	-				+0.6
3,799,555	-				-0.1
3,799,556	+				-1.0
3,799,557	-				-0.0
3,799,557	-				-2.0
3,799,557	-				+0.9
3,799,557	-				+0.1
3,799,557	-				+1.1
3,799,557	-				-0.1
3,799,558	+				+0.4
3,799,558	+				+0.3
3,799,558	+				+0.6
3,799,559	-				+0.7
3,799,559	-				+0.9
3,799,559	-				-0.7
3,799,559	-				-0.7
3,799,615	+				-1.1
3,799,627	-				+1.1
3,799,627	-				-1.8
3,799,673	+		IAI47_17895	0.13	-2.1
3,799,673	+		IAI47_17895	0.13	+0.2
3,799,673	+		IAI47_17895	0.13	-0.6
3,799,673	+		IAI47_17895	0.13	+1.2
3,799,673	+		IAI47_17895	0.13	+0.3
3,799,673	+		IAI47_17895	0.13	+0.6
3,799,673	+		IAI47_17895	0.13	+0.5
3,799,674	-		IAI47_17895	0.13	-0.5
3,799,674	-		IAI47_17895	0.13	+1.3
3,799,674	-		IAI47_17895	0.13	+0.1
3,799,674	-		IAI47_17895	0.13	-0.2
3,799,674	-		IAI47_17895	0.13	-0.4
3,799,774	+		IAI47_17895	0.40	+0.7
3,799,862	-		IAI47_17895	0.64	-0.6
3,799,862	-		IAI47_17895	0.64	-1.4
3,799,862	-		IAI47_17895	0.64	+1.4
3,799,864	+		IAI47_17895	0.65	-1.1
3,799,864	+		IAI47_17895	0.65	-0.1
3,799,864	+		IAI47_17895	0.65	-0.3
3,799,864	+		IAI47_17895	0.65	-0.1
3,799,864	+		IAI47_17895	0.65	-0.1
3,799,864	+		IAI47_17895	0.65	+1.9
3,799,864	+		IAI47_17895	0.65	+0.4
3,799,864	+		IAI47_17895	0.65	-1.1
3,799,865	-		IAI47_17895	0.65	-1.7
3,799,865	-		IAI47_17895	0.65	+0.9
3,799,865	-		IAI47_17895	0.65	+2.4
3,799,865	-		IAI47_17895	0.65	-0.5
3,799,944	+		IAI47_17895	0.86	+2.2
3,799,944	+		IAI47_17895	0.86	-0.1
3,799,944	+		IAI47_17895	0.86	-0.9
3,799,945	-		IAI47_17895	0.87	-0.1
3,799,958	+				-0.9
3,799,961	+				-0.1
3,799,961	+				-1.1
3,799,961	+				-0.9
3,799,961	+				+1.0
3,799,962	-				-0.4
3,799,962	-				-0.1
3,799,962	-				+1.1
3,799,962	-				-0.7
3,799,970	-				+0.9
3,799,984	+				+0.5
3,799,984	+				-0.7
3,799,984	+				+1.2
3,799,984	+				-1.1
3,799,985	-				-0.1
3,799,985	-				+0.6