Strain Fitness in Pantoea sp. MT58 around IAI47_16125

Experiment: Ying_AminoAcid20 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 2
3,413,040	+		IAI47_16120	0.56	-4.1
3,413,041	-		IAI47_16120	0.56	-2.2
3,413,041	-		IAI47_16120	0.56	-2.9
3,413,147	-		IAI47_16120	0.66	-1.5
3,413,147	-		IAI47_16120	0.66	-2.6
3,413,241	+		IAI47_16120	0.74	-2.3
3,413,242	-		IAI47_16120	0.74	-4.5
3,413,300	-		IAI47_16120	0.79	-4.4
3,413,360	-		IAI47_16120	0.84	-3.4
3,413,373	+		IAI47_16120	0.85	-0.7
3,413,373	+		IAI47_16120	0.85	-1.7
3,413,373	+		IAI47_16120	0.85	-1.2
3,413,373	+		IAI47_16120	0.85	-2.7
3,413,373	+		IAI47_16120	0.85	-2.0
3,413,373	+		IAI47_16120	0.85	-2.2
3,413,373	+		IAI47_16120	0.85	-3.2
3,413,374	-		IAI47_16120	0.85	-2.0
3,413,374	-		IAI47_16120	0.85	-4.0
3,413,374	-		IAI47_16120	0.85	-3.2
3,413,383	+		IAI47_16120	0.86	-2.3
3,413,400	+		IAI47_16120	0.88	-3.5
3,413,400	+		IAI47_16120	0.88	-2.3
3,413,400	+		IAI47_16120	0.88	-3.7
3,413,401	-		IAI47_16120	0.88	-1.2
3,413,401	-		IAI47_16120	0.88	-2.2
3,413,402	-		IAI47_16120	0.88	-1.5
3,413,571	-				-0.7
3,413,572	+				-0.7
3,413,572	+				-1.2
3,413,593	+				-3.2
3,413,656	+				-1.5
3,413,656	+				-3.3
3,413,656	+				-1.7
3,413,657	-				-0.9
3,413,657	-				-0.2
3,413,657	-				-0.2
3,413,707	-				+0.6
3,413,715	+				+1.8
3,413,715	+				-0.2
3,413,716	-				-0.3
3,413,733	+				-1.0
3,413,733	+				+0.8
3,413,733	+				+1.2
3,413,733	+				-1.1
3,413,768	+				+0.3
3,413,768	+				+0.1
3,413,768	+				+0.2
3,413,789	-				-0.0
3,413,818	-				-0.3
3,414,828	-				+0.1
3,414,828	-				+1.6
3,414,841	+				+0.4
3,414,852	+				+0.7
3,414,852	+				+0.3
3,414,852	+				+0.0
3,414,853	-				+0.5
3,414,853	-				-1.7
3,414,902	+				+0.2
3,414,902	+				+1.4
3,414,902	+				-2.2
3,414,903	-				-0.3
3,414,903	-				+1.2
3,414,905	+				-0.2
3,414,905	+				-2.5
3,414,905	+				+0.8
3,414,906	-				+0.4
3,414,906	-				-0.2
3,414,906	-				-0.5
3,414,915	+				-0.2
3,414,915	+				-0.7
3,414,915	+				-0.3
3,414,915	+				-0.0
3,414,916	-				-0.1
3,414,916	-				+2.2
3,414,918	+				+0.3
3,414,918	+				-0.6
3,414,918	+				+0.4
3,414,919	-				+1.2
3,414,919	-				-0.3
3,414,928	-				+0.7
3,414,928	-				+1.8
3,414,946	+				+1.3
3,414,947	-				+0.3
3,414,947	-				+0.8
3,414,947	-				-0.2
3,414,952	+				+1.2
3,414,996	+				+1.0
3,414,997	-				-0.6
3,414,997	-				+0.6
3,414,997	-				-1.2
3,415,041	-				+1.4
3,415,041	-				-0.2
3,415,052	-				+0.4
3,415,052	-				+0.8
3,415,061	+				-0.5
3,415,061	+				+0.8
3,415,062	-				+0.3
3,415,062	-				+0.0
3,415,062	-				+1.0
3,415,062	-				-0.2
3,415,062	-				-0.4
3,415,062	-				-1.4
3,415,062	-				-0.3
3,415,065	+				-0.6
3,415,066	-				+0.3
3,415,066	-				-0.6
3,415,066	-				-1.4
3,415,066	-				-0.2
3,415,066	-				+1.8
3,415,085	+				+0.1
3,415,086	-				-1.3
3,415,086	-				-1.2
3,415,086	-				-0.5