Strain Fitness in Pantoea sp. MT58 around IAI47_15705

Experiment: Ying_AminoAcid20 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 2
3,310,819	+		IAI47_15700	0.50	-0.6
3,310,857	+		IAI47_15700	0.52	-1.5
3,310,857	+		IAI47_15700	0.52	+0.0
3,310,857	+		IAI47_15700	0.52	+1.2
3,310,857	+		IAI47_15700	0.52	-0.0
3,310,858	-		IAI47_15700	0.52	-0.4
3,310,858	-		IAI47_15700	0.52	+1.4
3,310,858	-		IAI47_15700	0.52	-0.7
3,310,858	-		IAI47_15700	0.52	-1.9
3,310,859	+		IAI47_15700	0.52	+0.8
3,310,859	+		IAI47_15700	0.52	-0.5
3,310,859	+		IAI47_15700	0.52	-0.5
3,310,859	+		IAI47_15700	0.52	-0.2
3,310,859	+		IAI47_15700	0.52	+1.7
3,310,859	+		IAI47_15700	0.52	-1.2
3,310,859	+		IAI47_15700	0.52	+0.7
3,310,859	+		IAI47_15700	0.52	+0.5
3,310,859	+		IAI47_15700	0.52	-0.7
3,310,859	+		IAI47_15700	0.52	+1.4
3,310,860	-		IAI47_15700	0.53	+0.1
3,310,860	-		IAI47_15700	0.53	-1.0
3,310,860	-		IAI47_15700	0.53	-1.1
3,310,860	-		IAI47_15700	0.53	-1.2
3,310,860	-		IAI47_15700	0.53	-0.0
3,310,860	-		IAI47_15700	0.53	+0.3
3,310,860	-		IAI47_15700	0.53	+0.4
3,310,860	-		IAI47_15700	0.53	-1.0
3,310,872	+		IAI47_15700	0.53	+0.2
3,310,872	+		IAI47_15700	0.53	-0.1
3,310,873	-		IAI47_15700	0.53	-0.2
3,310,873	-		IAI47_15700	0.53	-0.6
3,310,905	+		IAI47_15700	0.55	+0.0
3,310,962	-		IAI47_15700	0.59	+0.1
3,311,030	+		IAI47_15700	0.63	+1.1
3,311,037	+		IAI47_15700	0.64	-0.6
3,311,038	-		IAI47_15700	0.64	+0.0
3,311,064	+		IAI47_15700	0.65	+0.2
3,311,065	-		IAI47_15700	0.65	-1.3
3,311,065	-		IAI47_15700	0.65	-0.5
3,311,188	-		IAI47_15700	0.73	+0.5
3,311,188	-		IAI47_15700	0.73	+0.5
3,311,188	-		IAI47_15700	0.73	+0.1
3,311,207	+		IAI47_15700	0.74	-0.3
3,311,207	+		IAI47_15700	0.74	-0.4
3,311,208	-		IAI47_15700	0.74	+0.6
3,311,208	-		IAI47_15700	0.74	+1.3
3,311,208	-		IAI47_15700	0.74	+0.3
3,311,238	+		IAI47_15700	0.76	-0.2
3,311,238	+		IAI47_15700	0.76	-0.7
3,311,239	-		IAI47_15700	0.76	+1.4
3,311,353	-		IAI47_15700	0.83	+0.8
3,311,354	+		IAI47_15700	0.83	-0.4
3,311,354	+		IAI47_15700	0.83	-1.0
3,311,354	+		IAI47_15700	0.83	+2.0
3,311,354	+		IAI47_15700	0.83	-0.6
3,311,354	+		IAI47_15700	0.83	+1.0
3,311,354	+		IAI47_15700	0.83	+0.1
3,311,354	+		IAI47_15700	0.83	-0.6
3,311,354	+		IAI47_15700	0.83	+1.6
3,311,354	+		IAI47_15700	0.83	+1.0
3,311,355	-		IAI47_15700	0.83	+0.0
3,311,355	-		IAI47_15700	0.83	+0.2
3,311,355	-		IAI47_15700	0.83	-1.2
3,311,355	-		IAI47_15700	0.83	+0.6
3,311,376	+		IAI47_15700	0.85	-0.2
3,311,418	+		IAI47_15700	0.87	-1.3
3,311,420	+		IAI47_15700	0.87	-0.4
3,311,420	+		IAI47_15700	0.87	+0.6
3,311,420	+		IAI47_15700	0.87	+0.3
3,311,420	+		IAI47_15700	0.87	+1.1
3,311,421	-		IAI47_15700	0.87	-0.2
3,311,421	-		IAI47_15700	0.87	-0.8
3,311,483	+				+1.0
3,311,483	+				+0.5
3,311,483	+				+0.8
3,311,483	+				+0.3
3,311,484	-				+1.4
3,311,484	-				+1.0
3,311,484	-				+1.3
3,311,484	-				-0.6
3,311,484	-				-1.5
3,311,661	-				-0.7
3,311,745	-				-0.0
3,311,745	-				-1.1
3,311,762	+				+0.3
3,311,762	+				+0.2
3,311,762	+				+0.5
3,311,762	+				-0.0
3,311,762	+				-0.7
3,311,763	-				-1.5
3,311,763	-				+0.2
3,311,763	-				+0.3
3,311,763	-				+1.6
3,311,763	-				-1.2
3,311,763	-				+1.3
3,311,771	+				+0.4
3,311,771	+				-0.5
3,311,772	-				+0.6
3,311,786	+				+0.4
3,311,786	+				+0.5
3,311,787	-				-2.5
3,311,787	-				+3.4
3,311,787	-				-0.4
3,311,806	+				-1.2
3,311,806	+				+1.2
3,311,806	+				-0.0
3,311,806	+				-0.4
3,311,807	-				-0.3
3,311,807	-				+0.8
3,311,807	-				-0.7
3,311,807	-				-1.3
3,311,807	-				-1.7
3,311,818	+				-0.5
3,311,818	+				-0.9
3,311,818	+				+0.8
3,311,819	-				-2.1
3,311,924	+		IAI47_15705	0.34	-0.4
3,312,015	+		IAI47_15705	0.60	+0.8
3,312,015	+		IAI47_15705	0.60	-0.2
3,312,019	+		IAI47_15705	0.61	+1.0
3,312,020	-		IAI47_15705	0.61	+0.6
3,312,023	+		IAI47_15705	0.62	+0.4
3,312,023	+		IAI47_15705	0.62	+0.3
3,312,023	+		IAI47_15705	0.62	+0.8
3,312,024	-		IAI47_15705	0.62	-0.3
3,312,024	-		IAI47_15705	0.62	+0.1
3,312,024	-		IAI47_15705	0.62	+0.4
3,312,032	+		IAI47_15705	0.65	-0.6
3,312,032	+		IAI47_15705	0.65	+0.1
3,312,032	+		IAI47_15705	0.65	-0.6
3,312,032	+		IAI47_15705	0.65	-0.0
3,312,032	+		IAI47_15705	0.65	-0.5
3,312,032	+		IAI47_15705	0.65	-0.7
3,312,032	+		IAI47_15705	0.65	+0.3
3,312,033	-		IAI47_15705	0.65	-0.9
3,312,033	-		IAI47_15705	0.65	-0.4
3,312,033	-		IAI47_15705	0.65	+0.3
3,312,033	-		IAI47_15705	0.65	-0.1
3,312,033	-		IAI47_15705	0.65	-1.2
3,312,033	-		IAI47_15705	0.65	-1.5
3,312,058	+		IAI47_15705	0.72	+0.8
3,312,058	+		IAI47_15705	0.72	+1.4
3,312,058	+		IAI47_15705	0.72	+0.3
3,312,058	+		IAI47_15705	0.72	+0.3
3,312,058	+		IAI47_15705	0.72	+1.2
3,312,058	+		IAI47_15705	0.72	+1.0
3,312,058	+		IAI47_15705	0.72	-0.7
3,312,059	-		IAI47_15705	0.72	+0.4
3,312,059	-		IAI47_15705	0.72	-3.3
3,312,059	-		IAI47_15705	0.72	+1.0
3,312,059	-		IAI47_15705	0.72	-0.0
3,312,059	-		IAI47_15705	0.72	-0.3
3,312,059	-		IAI47_15705	0.72	-1.2
3,312,059	-		IAI47_15705	0.72	+0.3
3,312,062	+		IAI47_15705	0.73	+0.5
3,312,062	+		IAI47_15705	0.73	-2.0
3,312,063	-		IAI47_15705	0.74	+0.4
3,312,097	+		IAI47_15705	0.83	-0.3
3,312,106	+		IAI47_15705	0.86	+2.1
3,312,107	-		IAI47_15705	0.86	-0.2
3,312,143	+				-0.0
3,312,143	+				-0.5
3,312,143	+				+1.1
3,312,152	+				+0.5
3,312,152	+				+0.3
3,312,152	+				-0.1
3,312,153	-				+0.8
3,312,153	-				-0.2
3,312,153	-				-0.4
3,312,205	+				-0.0
3,312,205	+				-0.6
3,312,205	+				-0.7
3,312,205	+				+0.5
3,312,205	+				-1.7
3,312,205	+				-0.3
3,312,205	+				+0.4
3,312,205	+				-0.4
3,312,206	-				+0.1
3,312,206	-				+0.3
3,312,206	-				+0.6
3,312,206	-				-0.4
3,312,206	-				+0.8
3,312,206	-				-0.5
3,312,206	-				+1.6
3,312,209	+				+1.3
3,312,209	+				+0.1
3,312,209	+				-0.2
3,312,209	+				+2.3
3,312,209	+				-0.2
3,312,209	+				-0.2
3,312,209	+				-0.6
3,312,209	+				+0.0
3,312,209	+				+0.0
3,312,209	+				-0.2
3,312,209	+				+0.4
3,312,209	+				-0.5
3,312,210	-				+1.2
3,312,210	-				-0.2
3,312,210	-				+1.1
3,312,210	-				+0.2
3,312,210	-				+1.3
3,312,210	-				-0.3
3,312,210	-				+0.4
3,312,210	-				+0.5
3,312,210	-				-0.2
3,312,210	-				+1.1
3,312,278	+				+1.3
3,312,278	+				-0.0
3,312,278	+				-0.6
3,312,279	-				+2.4
3,312,309	-				+0.0
3,312,309	-				+1.0
3,312,309	-				+1.8
3,312,309	-				+1.3
3,312,319	-				+0.1
3,312,333	-				+0.8
3,312,360	+		IAI47_15710	0.12	+0.7
3,312,361	-		IAI47_15710	0.12	+1.6
3,312,394	+		IAI47_15710	0.16	+0.8
3,312,394	+		IAI47_15710	0.16	+0.7
3,312,394	+		IAI47_15710	0.16	-0.2
3,312,394	+		IAI47_15710	0.16	+1.0
3,312,439	+		IAI47_15710	0.21	+1.0
3,312,439	+		IAI47_15710	0.21	+2.8
3,312,439	+		IAI47_15710	0.21	+1.4
3,312,440	-		IAI47_15710	0.21	+1.2
3,312,443	+		IAI47_15710	0.22	-0.7
3,312,443	+		IAI47_15710	0.22	-0.3
3,312,540	+		IAI47_15710	0.33	-0.2
3,312,540	+		IAI47_15710	0.33	-0.2
3,312,540	+		IAI47_15710	0.33	+0.5
3,312,540	+		IAI47_15710	0.33	+3.3
3,312,541	-		IAI47_15710	0.33	+0.8
3,312,568	+		IAI47_15710	0.36	+0.0
3,312,569	-		IAI47_15710	0.36	+0.5
3,312,571	+		IAI47_15710	0.36	+0.4
3,312,571	+		IAI47_15710	0.36	+1.4
3,312,571	+		IAI47_15710	0.36	+1.2
3,312,571	+		IAI47_15710	0.36	+0.1
3,312,571	+		IAI47_15710	0.36	+0.6
3,312,571	+		IAI47_15710	0.36	-0.0
3,312,571	+		IAI47_15710	0.36	-1.3
3,312,572	-		IAI47_15710	0.36	+2.5
3,312,572	-		IAI47_15710	0.36	+1.4
3,312,572	-		IAI47_15710	0.36	-0.2
3,312,572	-		IAI47_15710	0.36	-0.2
3,312,572	-		IAI47_15710	0.36	+1.1
3,312,572	-		IAI47_15710	0.36	-0.6
3,312,572	-		IAI47_15710	0.36	+1.8
3,312,597	+		IAI47_15710	0.39	+0.6
3,312,614	+		IAI47_15710	0.41	+0.2
3,312,614	+		IAI47_15710	0.41	+0.1
3,312,615	-		IAI47_15710	0.41	+0.2
3,312,615	-		IAI47_15710	0.41	+0.9
3,312,615	-		IAI47_15710	0.41	+1.8
3,312,641	+		IAI47_15710	0.44	+0.3
3,312,641	+		IAI47_15710	0.44	+1.7
3,312,642	-		IAI47_15710	0.45	+2.2
3,312,642	-		IAI47_15710	0.45	-0.2
3,312,642	-		IAI47_15710	0.45	-0.3
3,312,642	-		IAI47_15710	0.45	+0.5
3,312,659	-		IAI47_15710	0.47	+1.6
3,312,659	-		IAI47_15710	0.47	-0.2
3,312,683	-		IAI47_15710	0.49	+0.8
3,312,683	-		IAI47_15710	0.49	-0.5
3,312,733	+		IAI47_15710	0.55	+1.1
3,312,733	+		IAI47_15710	0.55	-0.5
3,312,733	+		IAI47_15710	0.55	+0.8
3,312,733	+		IAI47_15710	0.55	+0.1
3,312,766	+		IAI47_15710	0.59	+1.1
3,312,767	-		IAI47_15710	0.59	+0.3
3,312,767	-		IAI47_15710	0.59	-0.0
3,312,780	-		IAI47_15710	0.61	+1.2
3,312,890	+		IAI47_15710	0.73	-0.0
3,312,891	-		IAI47_15710	0.73	+1.4
3,312,933	-		IAI47_15710	0.78	+0.7
3,312,935	+		IAI47_15710	0.78	+0.6
3,312,935	+		IAI47_15710	0.78	+0.0
3,312,936	-		IAI47_15710	0.79	+0.5
3,312,943	+		IAI47_15710	0.79	-0.5
3,312,943	+		IAI47_15710	0.79	+0.8
3,312,944	-		IAI47_15710	0.80	+1.4
3,312,944	-		IAI47_15710	0.80	+0.3
3,312,946	+		IAI47_15710	0.80	+0.0
3,312,946	+		IAI47_15710	0.80	+0.8
3,312,947	-		IAI47_15710	0.80	-0.3
3,312,947	-		IAI47_15710	0.80	+0.4
3,312,947	-		IAI47_15710	0.80	+0.5
3,312,947	-		IAI47_15710	0.80	+0.8
3,312,970	+		IAI47_15710	0.83	-0.2
3,312,970	+		IAI47_15710	0.83	+0.3
3,313,043	+				-0.5
3,313,044	-				-0.3
3,313,046	+				-0.1
3,313,046	+				+0.8
3,313,046	+				+0.4
3,313,046	+				-0.5
3,313,047	-				-0.5
3,313,047	-				-0.6
3,313,047	-				+0.6
3,313,047	-				+1.0
3,313,088	+				-0.6
3,313,088	+				+0.3
3,313,088	+				+0.6
3,313,089	-				+0.8
3,313,089	-				+0.0
3,313,089	-				-0.2
3,313,089	-				+1.0
3,313,089	-				+0.5
3,313,132	+				+0.5
3,313,141	-				+0.1