Strain Fitness in Pantoea sp. MT58 around IAI47_08640

Experiment: Ying_AminoAcid20 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 2
1,823,026	+		IAI47_08630	0.61	-0.3
1,823,104	-		IAI47_08630	0.67	+0.0
1,823,133	+		IAI47_08630	0.70	+0.7
1,823,146	+		IAI47_08630	0.71	-1.2
1,823,146	+		IAI47_08630	0.71	+0.3
1,823,147	-		IAI47_08630	0.71	-0.3
1,823,178	+		IAI47_08630	0.74	-1.0
1,823,178	+		IAI47_08630	0.74	-0.0
1,823,179	-		IAI47_08630	0.74	+0.2
1,823,179	-		IAI47_08630	0.74	+0.0
1,823,179	-		IAI47_08630	0.74	+1.2
1,823,195	+		IAI47_08630	0.75	+0.8
1,823,195	+		IAI47_08630	0.75	+0.4
1,823,205	+		IAI47_08630	0.76	+1.8
1,823,205	+		IAI47_08630	0.76	+0.7
1,823,205	+		IAI47_08630	0.76	-0.0
1,823,205	+		IAI47_08630	0.76	+1.2
1,823,205	+		IAI47_08630	0.76	+1.8
1,823,205	+		IAI47_08630	0.76	-0.9
1,823,206	-		IAI47_08630	0.76	-0.2
1,823,206	-		IAI47_08630	0.76	-0.2
1,823,206	-		IAI47_08630	0.76	+0.4
1,823,206	-		IAI47_08630	0.76	+0.8
1,823,206	-		IAI47_08630	0.76	-0.3
1,823,208	+		IAI47_08630	0.76	+0.3
1,823,208	+		IAI47_08630	0.76	-0.3
1,823,208	+		IAI47_08630	0.76	-0.3
1,823,208	+		IAI47_08630	0.76	+0.4
1,823,209	-		IAI47_08630	0.77	-0.1
1,823,209	-		IAI47_08630	0.77	+1.1
1,823,209	-		IAI47_08630	0.77	-0.9
1,823,252	-		IAI47_08630	0.80	-1.5
1,823,252	-		IAI47_08630	0.80	-0.4
1,823,298	+		IAI47_08630	0.84	-1.1
1,823,317	-		IAI47_08630	0.86	+0.4
1,823,317	-		IAI47_08630	0.86	-0.6
1,823,317	-		IAI47_08630	0.86	+1.8
1,823,333	-		IAI47_08630	0.87	-1.5
1,823,333	-		IAI47_08630	0.87	+2.8
1,823,333	-		IAI47_08630	0.87	+0.3
1,823,384	+				+0.8
1,823,384	+				+0.7
1,823,436	-				+0.0
1,823,476	+				+0.4
1,823,476	+				-1.0
1,823,477	-				+0.0
1,823,477	-				+1.3
1,823,477	-				+1.3
1,823,477	-				+3.2
1,823,477	-				-0.2
1,823,477	-				+0.4
1,823,477	-				+0.3
1,823,477	-				-0.4
1,823,493	+				+0.8
1,823,514	+				+1.8
1,823,514	+				+1.9
1,823,514	+				-1.0
1,823,514	+				+1.7
1,823,514	+				-0.5
1,823,515	-				+1.1
1,823,515	-				+0.0
1,823,515	-				+2.4
1,823,521	+				+2.2
1,823,521	+				+1.8
1,823,522	-				-0.6
1,823,533	+				-0.3
1,823,623	+				-2.3
1,823,623	+				-1.3
1,823,623	+				+0.6
1,823,631	+				+0.7
1,823,632	-				-0.7
1,823,632	-				-0.6
1,823,657	-				-0.2
1,823,678	-				+0.0
1,823,787	-		IAI47_08635	0.34	+0.6
1,823,838	+		IAI47_08635	0.49	-0.7
1,823,838	+		IAI47_08635	0.49	-0.5
1,823,909	+		IAI47_08635	0.71	+1.3
1,823,910	-		IAI47_08635	0.71	-0.4
1,823,924	-		IAI47_08635	0.75	+0.4
1,823,924	-		IAI47_08635	0.75	+0.8
1,823,927	+		IAI47_08635	0.76	+0.4
1,823,927	+		IAI47_08635	0.76	+0.0
1,823,928	-		IAI47_08635	0.76	+0.5
1,823,934	+		IAI47_08635	0.78	+0.0
1,823,935	-		IAI47_08635	0.78	+1.4
1,823,935	-		IAI47_08635	0.78	+1.0
1,823,935	-		IAI47_08635	0.78	+1.0
1,823,935	-		IAI47_08635	0.78	-0.7
1,823,935	-		IAI47_08635	0.78	+1.8
1,823,936	+		IAI47_08635	0.79	-0.4
1,823,937	-		IAI47_08635	0.79	+0.3
1,824,009	+				+0.4
1,824,010	-				-0.7
1,824,010	-				+1.0
1,824,113	+		IAI47_08640	0.34	-2.0
1,824,113	+		IAI47_08640	0.34	-0.3
1,824,113	+		IAI47_08640	0.34	-0.8
1,824,113	+		IAI47_08640	0.34	-2.5
1,824,113	+		IAI47_08640	0.34	+0.3
1,824,113	+		IAI47_08640	0.34	+0.6
1,824,113	+		IAI47_08640	0.34	+0.3
1,824,113	+		IAI47_08640	0.34	+0.6
1,824,113	+		IAI47_08640	0.34	-0.1
1,824,114	-		IAI47_08640	0.35	-0.2
1,824,114	-		IAI47_08640	0.35	+0.5
1,824,114	-		IAI47_08640	0.35	+0.5
1,824,114	-		IAI47_08640	0.35	-0.5
1,824,114	-		IAI47_08640	0.35	+1.9
1,824,114	-		IAI47_08640	0.35	-0.5
1,824,114	-		IAI47_08640	0.35	+0.9
1,824,114	-		IAI47_08640	0.35	+0.7
1,824,115	+		IAI47_08640	0.35	+1.0
1,824,115	+		IAI47_08640	0.35	-0.1
1,824,115	+		IAI47_08640	0.35	-1.1
1,824,115	+		IAI47_08640	0.35	-0.1
1,824,116	-		IAI47_08640	0.35	-0.5
1,824,116	-		IAI47_08640	0.35	-0.3
1,824,116	-		IAI47_08640	0.35	-0.3
1,824,116	-		IAI47_08640	0.35	-0.5
1,824,124	+		IAI47_08640	0.38	-2.0
1,824,124	+		IAI47_08640	0.38	+0.4
1,824,125	-		IAI47_08640	0.38	+0.3
1,824,125	-		IAI47_08640	0.38	-0.9
1,824,125	-		IAI47_08640	0.38	-0.3
1,824,125	-		IAI47_08640	0.38	-0.1
1,824,129	+		IAI47_08640	0.39	+0.9
1,824,129	+		IAI47_08640	0.39	+0.1
1,824,129	+		IAI47_08640	0.39	+1.6
1,824,130	-		IAI47_08640	0.39	+0.2
1,824,130	-		IAI47_08640	0.39	+0.5
1,824,130	-		IAI47_08640	0.39	+0.3
1,824,130	-		IAI47_08640	0.39	-1.6
1,824,165	-		IAI47_08640	0.49	-0.1
1,824,183	+		IAI47_08640	0.54	-2.0
1,824,184	-		IAI47_08640	0.55	+1.0
1,824,184	-		IAI47_08640	0.55	-0.1
1,824,211	-		IAI47_08640	0.62	-1.0
1,824,211	-		IAI47_08640	0.62	-2.0
1,824,212	+		IAI47_08640	0.63	-1.5
1,824,212	+		IAI47_08640	0.63	-0.1
1,824,212	+		IAI47_08640	0.63	-0.7
1,824,212	+		IAI47_08640	0.63	-0.1
1,824,212	+		IAI47_08640	0.63	-2.0
1,824,212	+		IAI47_08640	0.63	-0.5
1,824,212	+		IAI47_08640	0.63	-0.1
1,824,212	+		IAI47_08640	0.63	-0.1
1,824,212	+		IAI47_08640	0.63	-0.1
1,824,212	+		IAI47_08640	0.63	+0.4
1,824,213	-		IAI47_08640	0.63	-0.6
1,824,213	-		IAI47_08640	0.63	-0.4
1,824,213	-		IAI47_08640	0.63	+1.3
1,824,213	-		IAI47_08640	0.63	-0.6
1,824,213	-		IAI47_08640	0.63	-1.1
1,824,245	+		IAI47_08640	0.72	-0.1
1,824,246	-		IAI47_08640	0.72	-1.0
1,824,265	+		IAI47_08640	0.78	-2.1
1,824,265	+		IAI47_08640	0.78	+0.5
1,824,266	-		IAI47_08640	0.78	-0.9
1,824,283	-		IAI47_08640	0.83	+0.2
1,824,297	+		IAI47_08640	0.87	-0.8
1,824,298	-		IAI47_08640	0.87	+0.3
1,824,325	+				+0.4
1,824,325	+				-1.3
1,824,326	-				-1.2
1,824,326	-				-0.4
1,824,326	-				+0.2
1,824,379	+				+0.1
1,824,412	-				-0.1
1,824,431	+				-0.4
1,824,431	+				+0.3
1,824,432	-				+1.9
1,824,432	-				-0.4
1,824,442	-				+0.4
1,824,442	-				-0.0
1,824,524	-				+1.3
1,824,563	+				-1.7
1,824,563	+				+0.0
1,824,564	-				-0.0
1,824,564	-				+0.5
1,824,594	-				+0.9
1,824,613	+				+0.9
1,824,628	+				+0.9
1,824,629	-				-0.1
1,824,696	+				+0.5
1,824,696	+				-0.4
1,824,696	+				-1.3
1,824,697	-				+0.2
1,824,697	-				+0.9
1,824,699	+				+1.4
1,824,699	+				+0.6
1,824,700	-				-2.0
1,824,700	-				+0.0
1,824,700	-				+0.4
1,824,702	+				+1.7
1,824,702	+				+0.3
1,824,702	+				+0.5
1,824,703	-				+0.1
1,824,703	-				+0.9
1,824,800	+				-0.1
1,824,800	+				-0.0
1,824,800	+				-0.0
1,824,800	+				+1.3
1,824,801	-				-0.3
1,824,801	-				+0.3
1,824,826	+				-0.4
1,824,826	+				+0.9
1,824,826	+				+1.4
1,824,826	+				+0.9
1,824,826	+				+0.1
1,824,826	+				+0.3
1,824,826	+				-0.9
1,824,826	+				-0.7
1,824,826	+				+0.0
1,824,826	+				-0.9
1,824,826	+				-1.3
1,824,826	+				+0.3
1,824,826	+				+1.3
1,824,827	-				+0.7
1,824,827	-				+0.9
1,824,827	-				+0.5
1,824,827	-				-0.7
1,824,827	-				-0.3
1,824,827	-				+0.3
1,824,827	-				-0.7
1,824,827	-				-0.7
1,824,827	-				-0.1
1,824,827	-				+1.2
1,824,827	-				+0.0
1,824,827	-				+1.3
1,824,827	-				-1.1
1,824,827	-				+0.9
1,824,827	-				-0.3
1,824,829	+				-0.1
1,824,829	+				+0.9
1,824,829	+				+0.2
1,824,829	+				+0.0
1,824,829	+				+1.9
1,824,830	-				-0.6
1,824,830	-				+1.9
1,824,830	-				+1.1
1,824,830	-				-0.7
1,824,830	-				+0.3
1,824,830	-				+0.0
1,824,830	-				+0.5
1,824,917	+				+0.4
1,824,938	+				-0.1
1,824,939	-				-2.5
1,824,960	+		IAI47_08645	0.11	-1.3
1,825,025	+		IAI47_08645	0.15	+0.2
1,825,025	+		IAI47_08645	0.15	+0.0
1,825,026	-		IAI47_08645	0.15	+0.4
1,825,026	-		IAI47_08645	0.15	+0.3
1,825,026	-		IAI47_08645	0.15	+1.9
1,825,032	-		IAI47_08645	0.15	+0.9
1,825,064	+		IAI47_08645	0.17	-0.7
1,825,065	-		IAI47_08645	0.17	+1.9
1,825,132	+		IAI47_08645	0.21	-0.1
1,825,132	+		IAI47_08645	0.21	+1.1
1,825,132	+		IAI47_08645	0.21	+0.1
1,825,132	+		IAI47_08645	0.21	-0.1
1,825,133	-		IAI47_08645	0.21	-0.6
1,825,133	-		IAI47_08645	0.21	+2.2
1,825,133	-		IAI47_08645	0.21	-1.3
1,825,133	-		IAI47_08645	0.21	+0.9
1,825,133	-		IAI47_08645	0.21	+0.1
1,825,133	-		IAI47_08645	0.21	+0.3
1,825,133	-		IAI47_08645	0.21	+0.7
1,825,136	+		IAI47_08645	0.21	-0.9
1,825,137	-		IAI47_08645	0.21	+0.0
1,825,137	-		IAI47_08645	0.21	-0.3
1,825,137	-		IAI47_08645	0.21	+1.3
1,825,179	-		IAI47_08645	0.24	+0.6
1,825,219	+		IAI47_08645	0.26	+0.3
1,825,219	+		IAI47_08645	0.26	-0.8
1,825,219	+		IAI47_08645	0.26	+0.4
1,825,219	+		IAI47_08645	0.26	+0.1
1,825,219	+		IAI47_08645	0.26	+0.5
1,825,219	+		IAI47_08645	0.26	-0.8
1,825,219	+		IAI47_08645	0.26	-0.6
1,825,219	+		IAI47_08645	0.26	-0.3
1,825,220	-		IAI47_08645	0.26	+0.4
1,825,220	-		IAI47_08645	0.26	-1.4
1,825,220	-		IAI47_08645	0.26	+0.9
1,825,338	-		IAI47_08645	0.33	-0.1
1,825,338	-		IAI47_08645	0.33	+0.5
1,825,338	-		IAI47_08645	0.33	+0.9