Strain Fitness in Pantoea sp. MT58 around IAI47_07565

Experiment: Ying_AminoAcid20 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 2
1,597,183	+		IAI47_07560	0.36	-0.2
1,597,183	+		IAI47_07560	0.36	+0.5
1,597,183	+		IAI47_07560	0.36	-0.0
1,597,184	-		IAI47_07560	0.37	-0.2
1,597,184	-		IAI47_07560	0.37	+1.2
1,597,226	+		IAI47_07560	0.39	-0.2
1,597,226	+		IAI47_07560	0.39	-0.5
1,597,226	+		IAI47_07560	0.39	+1.0
1,597,226	+		IAI47_07560	0.39	+0.8
1,597,226	+		IAI47_07560	0.39	-0.6
1,597,226	+		IAI47_07560	0.39	-1.4
1,597,226	+		IAI47_07560	0.39	+2.0
1,597,226	+		IAI47_07560	0.39	-0.0
1,597,227	-		IAI47_07560	0.39	+0.8
1,597,227	-		IAI47_07560	0.39	+0.4
1,597,227	-		IAI47_07560	0.39	-0.2
1,597,227	-		IAI47_07560	0.39	-2.2
1,597,227	-		IAI47_07560	0.39	-0.8
1,597,227	-		IAI47_07560	0.39	+0.2
1,597,255	+		IAI47_07560	0.41	-0.6
1,597,276	+		IAI47_07560	0.43	-0.7
1,597,322	+		IAI47_07560	0.46	-0.4
1,597,323	-		IAI47_07560	0.46	-1.2
1,597,323	-		IAI47_07560	0.46	-0.0
1,597,323	-		IAI47_07560	0.46	+0.8
1,597,323	-		IAI47_07560	0.46	+1.8
1,597,324	+		IAI47_07560	0.46	-2.0
1,597,324	+		IAI47_07560	0.46	+2.0
1,597,342	+		IAI47_07560	0.47	-0.0
1,597,342	+		IAI47_07560	0.47	-0.0
1,597,447	+		IAI47_07560	0.54	+1.3
1,597,447	+		IAI47_07560	0.54	-0.2
1,597,447	+		IAI47_07560	0.54	+0.0
1,597,447	+		IAI47_07560	0.54	+0.3
1,597,447	+		IAI47_07560	0.54	-2.2
1,597,448	-		IAI47_07560	0.54	+2.6
1,597,448	-		IAI47_07560	0.54	+0.8
1,597,448	-		IAI47_07560	0.54	-0.4
1,597,448	-		IAI47_07560	0.54	+0.2
1,597,572	+		IAI47_07560	0.63	+0.1
1,597,573	-		IAI47_07560	0.63	-0.0
1,597,573	-		IAI47_07560	0.63	-0.9
1,597,573	-		IAI47_07560	0.63	-1.1
1,597,573	-		IAI47_07560	0.63	-0.2
1,597,727	-		IAI47_07560	0.73	+0.1
1,597,792	+		IAI47_07560	0.78	-0.2
1,597,792	+		IAI47_07560	0.78	-1.3
1,597,933	+		IAI47_07560	0.87	-0.0
1,597,933	+		IAI47_07560	0.87	+0.5
1,597,946	+		IAI47_07560	0.88	+0.2
1,597,953	+		IAI47_07560	0.88	+0.3
1,597,953	+		IAI47_07560	0.88	-0.1
1,597,954	-		IAI47_07560	0.88	+0.4
1,597,954	-		IAI47_07560	0.88	+0.4
1,597,954	-		IAI47_07560	0.88	-0.7
1,597,984	+				+0.5
1,597,984	+				+0.8
1,598,059	+				-1.2
1,598,060	-				+0.1
1,598,060	-				-0.7
1,598,060	-				+0.8
1,598,061	+				+0.8
1,598,139	+				-0.9
1,598,139	+				-0.2
1,598,139	+				+0.2
1,598,139	+				-2.0
1,598,139	+				-0.9
1,598,140	-				-0.2
1,598,140	-				+1.1
1,598,140	-				+1.1
1,598,140	-				+0.1
1,598,148	+				-1.2
1,598,148	+				-0.5
1,598,149	-				-0.5
1,598,149	-				-0.6
1,598,149	-				+1.1
1,598,149	-				+0.2
1,598,149	-				-1.5
1,598,149	-				+0.6
1,598,157	+				-1.0
1,598,158	-				+1.8
1,598,158	-				+0.5
1,598,158	-				-0.5
1,598,158	-				+0.7
1,598,158	-				-0.0
1,598,211	+				-0.3
1,598,212	-				-1.7
1,598,212	-				-0.1
1,598,262	-		IAI47_07565	0.11	-0.4
1,598,284	+		IAI47_07565	0.13	-0.2
1,598,285	-		IAI47_07565	0.13	-1.4
1,598,285	-		IAI47_07565	0.13	-0.7
1,598,391	+		IAI47_07565	0.24	+0.8
1,598,392	-		IAI47_07565	0.24	+2.2
1,598,392	-		IAI47_07565	0.24	+0.8
1,598,400	+		IAI47_07565	0.24	+1.4
1,598,488	+		IAI47_07565	0.33	-1.2
1,598,488	+		IAI47_07565	0.33	-0.4
1,598,489	-		IAI47_07565	0.33	-1.6
1,598,489	-		IAI47_07565	0.33	-0.0
1,598,489	-		IAI47_07565	0.33	+0.9
1,598,489	-		IAI47_07565	0.33	+1.2
1,598,489	-		IAI47_07565	0.33	-0.0
1,598,505	+		IAI47_07565	0.35	-1.0
1,598,505	+		IAI47_07565	0.35	+1.1
1,598,505	+		IAI47_07565	0.35	-0.7
1,598,505	+		IAI47_07565	0.35	+0.3
1,598,506	-		IAI47_07565	0.35	-0.7
1,598,506	-		IAI47_07565	0.35	-0.4
1,598,524	-		IAI47_07565	0.37	+0.5
1,598,549	+		IAI47_07565	0.39	-2.0
1,598,550	-		IAI47_07565	0.39	-0.4
1,598,574	-		IAI47_07565	0.41	-0.6
1,598,574	-		IAI47_07565	0.41	-0.2
1,598,580	+		IAI47_07565	0.42	-0.2
1,598,650	+		IAI47_07565	0.49	-0.8
1,598,650	+		IAI47_07565	0.49	-1.2
1,598,651	-		IAI47_07565	0.49	+0.1
1,598,651	-		IAI47_07565	0.49	+1.7
1,598,651	-		IAI47_07565	0.49	-0.1
1,598,653	+		IAI47_07565	0.49	-2.4
1,598,653	+		IAI47_07565	0.49	+0.2
1,598,653	+		IAI47_07565	0.49	-0.1
1,598,653	+		IAI47_07565	0.49	+0.1
1,598,653	+		IAI47_07565	0.49	-0.8
1,598,653	+		IAI47_07565	0.49	-0.3
1,598,653	+		IAI47_07565	0.49	+1.8
1,598,653	+		IAI47_07565	0.49	+0.2
1,598,654	-		IAI47_07565	0.49	-0.0
1,598,654	-		IAI47_07565	0.49	-0.3
1,598,654	-		IAI47_07565	0.49	-0.5
1,598,654	-		IAI47_07565	0.49	+0.8
1,598,654	-		IAI47_07565	0.49	-0.5
1,598,654	-		IAI47_07565	0.49	+0.6
1,598,654	-		IAI47_07565	0.49	-0.3
1,598,654	-		IAI47_07565	0.49	+0.2
1,598,654	-		IAI47_07565	0.49	-0.4
1,598,654	-		IAI47_07565	0.49	-0.8
1,598,654	-		IAI47_07565	0.49	+1.8
1,598,654	-		IAI47_07565	0.49	-0.4
1,598,654	-		IAI47_07565	0.49	-0.3
1,598,654	-		IAI47_07565	0.49	+1.1
1,598,654	-		IAI47_07565	0.49	+0.5
1,598,694	+		IAI47_07565	0.53	-0.9
1,598,772	+		IAI47_07565	0.61	-0.2
1,598,773	-		IAI47_07565	0.61	-0.1
1,598,773	-		IAI47_07565	0.61	+0.5
1,598,773	-		IAI47_07565	0.61	-2.3
1,598,785	-		IAI47_07565	0.62	-0.0
1,598,785	-		IAI47_07565	0.62	-0.4
1,598,785	-		IAI47_07565	0.62	-0.9
1,598,785	-		IAI47_07565	0.62	-0.5
1,598,785	-		IAI47_07565	0.62	+0.2
1,598,788	+		IAI47_07565	0.62	-1.1
1,598,788	+		IAI47_07565	0.62	-0.2
1,598,788	+		IAI47_07565	0.62	-2.0
1,598,788	+		IAI47_07565	0.62	-0.1
1,598,789	-		IAI47_07565	0.62	-0.2
1,598,789	-		IAI47_07565	0.62	+0.8
1,598,789	-		IAI47_07565	0.62	+2.8
1,598,789	-		IAI47_07565	0.62	-0.8
1,598,794	+		IAI47_07565	0.63	-0.7
1,598,795	-		IAI47_07565	0.63	+0.4
1,598,835	+		IAI47_07565	0.67	-0.8
1,598,835	+		IAI47_07565	0.67	+1.8
1,598,838	+		IAI47_07565	0.67	-0.1
1,598,847	+		IAI47_07565	0.68	+0.7
1,598,847	+		IAI47_07565	0.68	-0.5
1,598,847	+		IAI47_07565	0.68	-0.3
1,598,847	+		IAI47_07565	0.68	+0.3
1,598,847	+		IAI47_07565	0.68	-0.8
1,598,847	+		IAI47_07565	0.68	+1.2
1,598,847	+		IAI47_07565	0.68	-0.2
1,598,847	+		IAI47_07565	0.68	+0.0
1,598,847	+		IAI47_07565	0.68	+0.1
1,598,847	+		IAI47_07565	0.68	-0.2
1,598,848	-		IAI47_07565	0.68	+0.1
1,598,848	-		IAI47_07565	0.68	+0.8
1,598,848	-		IAI47_07565	0.68	-0.2
1,598,848	-		IAI47_07565	0.68	+0.8
1,598,848	-		IAI47_07565	0.68	+0.1
1,598,848	-		IAI47_07565	0.68	+0.7
1,598,848	-		IAI47_07565	0.68	-1.3
1,598,851	+		IAI47_07565	0.68	-0.3
1,598,851	+		IAI47_07565	0.68	-0.2
1,598,852	-		IAI47_07565	0.69	-0.0
1,598,852	-		IAI47_07565	0.69	-0.2
1,598,852	-		IAI47_07565	0.69	+0.8
1,598,852	-		IAI47_07565	0.69	-0.2
1,598,866	+		IAI47_07565	0.70	-0.6
1,598,866	+		IAI47_07565	0.70	+0.4
1,598,867	-		IAI47_07565	0.70	-0.4
1,598,953	+		IAI47_07565	0.78	-0.8
1,598,953	+		IAI47_07565	0.78	+0.1
1,598,953	+		IAI47_07565	0.78	-0.4
1,598,953	+		IAI47_07565	0.78	-0.5
1,598,953	+		IAI47_07565	0.78	+0.8
1,598,953	+		IAI47_07565	0.78	+0.3
1,598,954	-		IAI47_07565	0.78	+0.0
1,598,954	-		IAI47_07565	0.78	-0.5
1,599,018	+		IAI47_07565	0.85	+0.3
1,599,033	-		IAI47_07565	0.86	-1.1
1,599,033	-		IAI47_07565	0.86	-0.0
1,599,060	+		IAI47_07565	0.89	+0.5
1,599,060	+		IAI47_07565	0.89	-0.2
1,599,060	+		IAI47_07565	0.89	+0.2
1,599,094	+				-0.8
1,599,094	+				-0.8
1,599,094	+				+0.1
1,599,094	+				-0.3
1,599,094	+				+0.1
1,599,095	-				+1.7
1,599,095	-				+0.8
1,599,095	-				+0.8
1,599,095	-				+0.5
1,599,148	-				+0.2
1,599,220	-				+1.1
1,599,220	-				-0.2
1,599,269	+				-0.5
1,599,270	-				+0.5
1,599,277	+				+1.0
1,599,331	+				-1.0
1,599,331	+				-1.0
1,599,331	+				-0.9
1,599,331	+				-0.3
1,599,332	-				-0.4
1,599,332	-				-1.8
1,599,332	-				+0.4
1,599,347	+				+0.4
1,599,374	+				-2.4
1,599,374	+				+0.7
1,599,374	+				-0.1
1,599,375	-				-0.2
1,599,375	-				-0.5
1,599,375	-				+0.5
1,599,375	-				-0.4
1,599,426	+				-0.8
1,599,426	+				-0.2
1,599,426	+				-0.8
1,599,427	-				-0.0
1,599,427	-				-0.3
1,599,427	-				+1.3
1,599,427	-				+0.1
1,599,427	-				-0.3
1,599,440	-				-0.6
1,599,457	-				-0.0
1,599,460	-				-0.5
1,599,460	-				-0.6
1,599,466	+				-0.7
1,599,466	+				-1.1
1,599,467	-				+0.8
1,599,467	-				-1.0
1,599,467	-				+0.5
1,599,473	+				-0.0
1,599,488	-				+2.2
1,599,488	-				-1.4
1,599,570	+				-0.5
1,599,570	+				-0.1
1,599,570	+				-0.2
1,599,601	+				+0.3
1,599,643	+				-2.2
1,599,644	-				+0.7
1,599,644	-				-0.1
1,599,648	+				-0.8
1,599,648	+				-0.2
1,599,648	+				-0.2
1,599,648	+				+0.4
1,599,649	-				+2.3
1,599,649	-				-1.8
1,599,649	-				-0.6
1,599,649	-				-0.9
1,599,766	+		IAI47_07570	0.15	-0.2
1,599,767	-		IAI47_07570	0.15	+1.0
1,599,820	-		IAI47_07570	0.21	+0.4
1,599,833	+		IAI47_07570	0.22	-0.4
1,599,834	-		IAI47_07570	0.23	+0.2
1,599,836	+		IAI47_07570	0.23	-1.0
1,599,837	-		IAI47_07570	0.23	+0.5
1,599,837	-		IAI47_07570	0.23	+1.1
1,599,837	-		IAI47_07570	0.23	+0.5
1,599,996	+		IAI47_07570	0.40	-0.0
1,599,996	+		IAI47_07570	0.40	-1.1
1,599,996	+		IAI47_07570	0.40	-0.1
1,599,996	+		IAI47_07570	0.40	-0.6
1,599,996	+		IAI47_07570	0.40	+0.1
1,599,996	+		IAI47_07570	0.40	+0.4
1,599,997	-		IAI47_07570	0.40	-0.4
1,600,056	-		IAI47_07570	0.47	-0.2
1,600,069	-		IAI47_07570	0.48	-0.2
1,600,094	+		IAI47_07570	0.51	+1.4
1,600,095	-		IAI47_07570	0.51	+0.2
1,600,100	+		IAI47_07570	0.52	+0.8
1,600,100	+		IAI47_07570	0.52	+0.4
1,600,100	+		IAI47_07570	0.52	-0.0
1,600,100	+		IAI47_07570	0.52	+1.8
1,600,100	+		IAI47_07570	0.52	-0.8
1,600,101	-		IAI47_07570	0.52	-0.3
1,600,101	-		IAI47_07570	0.52	-0.0
1,600,101	-		IAI47_07570	0.52	+0.6
1,600,101	-		IAI47_07570	0.52	-0.1
1,600,101	-		IAI47_07570	0.52	-2.0
1,600,133	-		IAI47_07570	0.55	-0.8