Strain Fitness in Pantoea sp. MT58 around IAI47_07275

Experiment: Ying_AminoAcid20 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 2
1,537,513	+				-0.3
1,537,513	+				-0.0
1,537,514	-				-0.5
1,537,514	-				+2.8
1,537,514	-				+0.9
1,537,516	+				-0.2
1,537,516	+				+0.4
1,537,516	+				+0.4
1,537,517	-				+0.6
1,537,571	+				-0.2
1,537,572	-				-0.6
1,537,572	-				+0.8
1,537,572	-				-1.0
1,537,583	+				-0.7
1,537,583	+				+0.1
1,537,584	-				+1.4
1,537,594	+				+0.4
1,537,594	+				+1.4
1,537,595	-				-0.6
1,537,595	-				+0.3
1,537,595	-				-0.4
1,537,595	-				-0.5
1,537,595	-				-1.5
1,537,600	+				+1.1
1,537,600	+				-2.8
1,537,601	-				-1.2
1,537,601	-				+0.2
1,537,606	+				-0.0
1,537,606	+				+0.7
1,537,606	+				+0.7
1,537,606	+				-0.0
1,537,607	-				+1.5
1,537,607	-				-1.9
1,537,607	-				-0.5
1,537,612	-				-0.9
1,537,612	-				-0.9
1,537,612	-				+0.2
1,537,643	+				+0.1
1,537,647	+				+0.0
1,537,647	+				+1.8
1,537,647	+				+1.3
1,537,647	+				-1.3
1,537,648	-				-1.6
1,537,648	-				-0.1
1,537,655	+				-0.2
1,537,656	-				-2.1
1,537,656	-				+1.2
1,537,656	-				-0.5
1,537,656	-				+0.8
1,537,656	-				-0.8
1,537,656	-				+0.1
1,537,656	-				-0.0
1,537,656	-				-0.2
1,537,656	-				-1.4
1,537,656	-				-0.8
1,537,660	+				-1.0
1,537,660	+				+1.5
1,537,661	-				-0.2
1,537,661	-				+0.2
1,537,698	+				-1.0
1,537,699	-				-0.7
1,537,716	+		IAI47_07270	0.12	-0.4
1,537,716	+		IAI47_07270	0.12	+0.1
1,537,717	-		IAI47_07270	0.12	-1.1
1,537,743	+		IAI47_07270	0.16	-0.9
1,537,743	+		IAI47_07270	0.16	-0.3
1,537,744	-		IAI47_07270	0.16	+0.1
1,537,744	-		IAI47_07270	0.16	+0.4
1,537,746	-		IAI47_07270	0.16	-0.5
1,537,746	-		IAI47_07270	0.16	-0.8
1,537,818	+		IAI47_07270	0.28	+0.7
1,537,818	+		IAI47_07270	0.28	-0.4
1,537,819	-		IAI47_07270	0.28	-0.4
1,537,819	-		IAI47_07270	0.28	+0.1
1,537,819	-		IAI47_07270	0.28	+0.1
1,537,851	+		IAI47_07270	0.33	+1.0
1,537,852	-		IAI47_07270	0.33	+0.8
1,537,852	-		IAI47_07270	0.33	-2.4
1,537,891	+		IAI47_07270	0.39	+1.0
1,537,913	+		IAI47_07270	0.43	-0.3
1,537,913	+		IAI47_07270	0.43	-0.8
1,537,914	-		IAI47_07270	0.43	-0.5
1,537,953	+		IAI47_07270	0.49	+0.8
1,537,976	+		IAI47_07270	0.53	-0.7
1,537,977	-		IAI47_07270	0.53	+0.2
1,538,038	-		IAI47_07270	0.63	-0.4
1,538,059	+		IAI47_07270	0.66	+0.0
1,538,059	+		IAI47_07270	0.66	+1.8
1,538,060	-		IAI47_07270	0.66	-0.4
1,538,060	-		IAI47_07270	0.66	+1.6
1,538,069	+		IAI47_07270	0.67	-0.1
1,538,069	+		IAI47_07270	0.67	-0.2
1,538,070	-		IAI47_07270	0.68	-0.2
1,538,070	-		IAI47_07270	0.68	+0.4
1,538,091	+		IAI47_07270	0.71	-1.4
1,538,091	+		IAI47_07270	0.71	-0.2
1,538,091	+		IAI47_07270	0.71	+1.1
1,538,091	+		IAI47_07270	0.71	-1.2
1,538,091	+		IAI47_07270	0.71	+0.2
1,538,092	-		IAI47_07270	0.71	+0.1
1,538,093	+		IAI47_07270	0.71	+0.1
1,538,093	+		IAI47_07270	0.71	+0.6
1,538,093	+		IAI47_07270	0.71	+0.1
1,538,093	+		IAI47_07270	0.71	+0.8
1,538,093	+		IAI47_07270	0.71	-0.1
1,538,093	+		IAI47_07270	0.71	-0.2
1,538,093	+		IAI47_07270	0.71	+0.0
1,538,093	+		IAI47_07270	0.71	+0.1
1,538,093	+		IAI47_07270	0.71	+1.1
1,538,093	+		IAI47_07270	0.71	+0.3
1,538,094	-		IAI47_07270	0.71	+1.8
1,538,094	-		IAI47_07270	0.71	+0.1
1,538,094	-		IAI47_07270	0.71	+0.7
1,538,094	-		IAI47_07270	0.71	+0.5
1,538,094	-		IAI47_07270	0.71	+1.3
1,538,094	-		IAI47_07270	0.71	+0.2
1,538,094	-		IAI47_07270	0.71	-0.0
1,538,094	-		IAI47_07270	0.71	-1.0
1,538,094	-		IAI47_07270	0.71	+0.1
1,538,206	+		IAI47_07270	0.89	-0.4
1,538,206	+		IAI47_07270	0.89	-0.5
1,538,207	-		IAI47_07270	0.89	+0.3
1,538,207	-		IAI47_07270	0.89	-0.2
1,538,263	+				-0.2
1,538,264	-				+1.3
1,538,284	+				-0.2
1,538,284	+				+0.3
1,538,284	+				-1.1
1,538,284	+				+1.7
1,538,285	-				+0.7
1,538,285	-				-2.3
1,538,285	-				-1.4
1,538,309	+				-0.1
1,538,387	+				+0.4
1,538,387	+				+0.2
1,538,387	+				+0.2
1,538,388	-				-0.8
1,538,388	-				+0.8
1,538,390	-				-0.5
1,538,400	-				+0.8
1,538,483	+				-0.9
1,538,595	+		IAI47_07275	0.29	+0.2
1,538,596	-		IAI47_07275	0.29	-0.2
1,538,642	-		IAI47_07275	0.38	-0.1
1,538,725	-		IAI47_07275	0.53	+1.0
1,538,734	-		IAI47_07275	0.55	+0.2
1,538,734	-		IAI47_07275	0.55	+0.3
1,538,775	+		IAI47_07275	0.63	+1.6
1,538,776	-		IAI47_07275	0.63	-0.0
1,538,776	-		IAI47_07275	0.63	+1.4
1,538,776	-		IAI47_07275	0.63	-0.6
1,538,776	-		IAI47_07275	0.63	+1.0
1,538,831	-		IAI47_07275	0.73	+0.2
1,538,835	+		IAI47_07275	0.74	+0.1
1,538,835	+		IAI47_07275	0.74	+0.5
1,538,836	-		IAI47_07275	0.74	-0.9
1,538,836	-		IAI47_07275	0.74	+0.2
1,538,853	-		IAI47_07275	0.77	+1.1
1,538,906	+		IAI47_07275	0.87	-0.3
1,538,906	+		IAI47_07275	0.87	+0.5
1,538,907	-		IAI47_07275	0.87	+0.8
1,538,938	+				-0.6
1,538,938	+				-1.5
1,538,938	+				+1.1
1,538,938	+				-0.4
1,538,939	-				+1.8
1,538,939	-				+0.5
1,538,939	-				+0.6
1,538,974	+				+0.3
1,538,974	+				+0.8
1,538,975	-				-2.1
1,538,975	-				+0.8
1,538,975	-				-1.0
1,538,975	-				-0.5
1,538,994	+				-0.4
1,538,994	+				-0.3
1,539,023	+				+2.8
1,539,046	+				-0.7
1,539,046	+				+0.2
1,539,046	+				-0.2
1,539,047	-				-0.4
1,539,047	-				+0.2
1,539,047	-				+0.4
1,539,118	-		IAI47_07280	0.18	+0.8
1,539,164	-		IAI47_07280	0.24	+0.4
1,539,243	+		IAI47_07280	0.36	-0.6
1,539,246	+		IAI47_07280	0.36	+1.8
1,539,247	-		IAI47_07280	0.36	-0.6
1,539,247	-		IAI47_07280	0.36	-0.8
1,539,247	-		IAI47_07280	0.36	-0.5
1,539,302	+		IAI47_07280	0.44	-0.7
1,539,302	+		IAI47_07280	0.44	+2.1
1,539,303	-		IAI47_07280	0.44	-0.2
1,539,396	+		IAI47_07280	0.58	-1.2
1,539,396	+		IAI47_07280	0.58	-0.4
1,539,412	+		IAI47_07280	0.60	+0.3
1,539,412	+		IAI47_07280	0.60	+0.2
1,539,413	-		IAI47_07280	0.60	-0.4
1,539,413	-		IAI47_07280	0.60	+0.3
1,539,445	+		IAI47_07280	0.65	+1.0
1,539,571	+		IAI47_07280	0.83	-1.2
1,539,601	+		IAI47_07280	0.87	+0.6
1,539,601	+		IAI47_07280	0.87	-0.2
1,539,602	-		IAI47_07280	0.87	+1.1
1,539,668	-				-0.1
1,539,673	+				+0.1
1,539,673	+				+0.3
1,539,673	+				+0.8
1,539,674	-				-1.3
1,539,679	+				-2.2
1,539,724	+				-0.9
1,539,724	+				+0.4
1,539,724	+				-1.3
1,539,724	+				-2.0
1,539,724	+				-1.2
1,539,724	+				-0.8
1,539,725	-				-0.6
1,539,725	-				-0.8
1,539,725	-				+1.0
1,539,725	-				-1.1
1,539,725	-				+0.9
1,539,725	-				-1.4
1,539,729	+				+0.7
1,539,729	+				+0.4
1,539,729	+				-0.8
1,539,729	+				-0.8
1,539,729	+				+1.1
1,539,730	-				+0.1
1,539,730	-				+0.3
1,539,730	-				-0.5
1,539,730	-				-1.2
1,539,730	-				-1.2
1,539,730	-				-0.9
1,539,773	+				-0.4
1,539,774	-				-0.5
1,539,856	+				+1.8
1,539,856	+				-1.5
1,539,856	+				+1.5
1,539,857	-				-0.0
1,539,866	-				-0.8
1,539,866	-				-1.5
1,539,896	+				+0.9
1,539,926	-				+0.5