Strain Fitness in Pantoea sp. MT58 around IAI47_06280

Experiment: Ying_AminoAcid20 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 2
1,276,474	+		IAI47_06275	0.46	-5.4
1,276,474	+		IAI47_06275	0.46	-3.2
1,276,474	+		IAI47_06275	0.46	-0.8
1,276,474	+		IAI47_06275	0.46	-3.0
1,276,475	-		IAI47_06275	0.46	-2.5
1,276,475	-		IAI47_06275	0.46	-1.2
1,276,475	-		IAI47_06275	0.46	-3.5
1,276,475	-		IAI47_06275	0.46	-2.2
1,276,500	+		IAI47_06275	0.47	-2.9
1,276,501	-		IAI47_06275	0.47	-2.7
1,276,549	+		IAI47_06275	0.51	-3.1
1,276,549	+		IAI47_06275	0.51	-2.0
1,276,549	+		IAI47_06275	0.51	-3.6
1,276,549	+		IAI47_06275	0.51	-1.5
1,276,549	+		IAI47_06275	0.51	-3.3
1,276,549	+		IAI47_06275	0.51	-1.8
1,276,550	-		IAI47_06275	0.51	-3.5
1,276,550	-		IAI47_06275	0.51	-3.8
1,276,550	-		IAI47_06275	0.51	-3.8
1,276,550	-		IAI47_06275	0.51	-2.9
1,276,550	-		IAI47_06275	0.51	-3.4
1,276,550	-		IAI47_06275	0.51	-4.0
1,276,550	-		IAI47_06275	0.51	-0.2
1,276,550	-		IAI47_06275	0.51	-1.5
1,276,550	-		IAI47_06275	0.51	-2.9
1,276,550	-		IAI47_06275	0.51	-2.3
1,276,550	-		IAI47_06275	0.51	-3.8
1,276,555	+		IAI47_06275	0.51	-3.4
1,276,556	-		IAI47_06275	0.51	-1.8
1,276,556	-		IAI47_06275	0.51	-2.0
1,276,556	-		IAI47_06275	0.51	-2.2
1,276,556	-		IAI47_06275	0.51	-4.3
1,276,556	-		IAI47_06275	0.51	-2.5
1,276,556	-		IAI47_06275	0.51	-1.5
1,276,584	+		IAI47_06275	0.53	-3.3
1,276,597	+		IAI47_06275	0.54	-3.5
1,276,683	+		IAI47_06275	0.59	-0.8
1,276,683	+		IAI47_06275	0.59	-0.8
1,276,683	+		IAI47_06275	0.59	-3.0
1,276,704	+		IAI47_06275	0.61	-2.7
1,276,726	-		IAI47_06275	0.62	-3.5
1,276,780	-		IAI47_06275	0.66	-3.7
1,276,785	+		IAI47_06275	0.66	-1.8
1,276,785	+		IAI47_06275	0.66	-3.9
1,276,785	+		IAI47_06275	0.66	-2.5
1,276,785	+		IAI47_06275	0.66	-3.2
1,276,786	-		IAI47_06275	0.66	-3.8
1,276,786	-		IAI47_06275	0.66	-3.0
1,276,786	-		IAI47_06275	0.66	-1.2
1,276,786	-		IAI47_06275	0.66	-3.7
1,276,805	+		IAI47_06275	0.67	-3.1
1,276,805	+		IAI47_06275	0.67	-3.3
1,276,806	-		IAI47_06275	0.68	-2.9
1,276,860	+		IAI47_06275	0.71	-1.8
1,276,887	+		IAI47_06275	0.73	-2.4
1,276,888	-		IAI47_06275	0.73	-4.6
1,276,888	-		IAI47_06275	0.73	-1.2
1,276,996	+		IAI47_06275	0.80	-2.2
1,276,996	+		IAI47_06275	0.80	-5.1
1,276,997	-		IAI47_06275	0.80	-2.0
1,277,007	+		IAI47_06275	0.81	-3.8
1,277,007	+		IAI47_06275	0.81	-4.1
1,277,007	+		IAI47_06275	0.81	-2.4
1,277,007	+		IAI47_06275	0.81	-1.2
1,277,008	-		IAI47_06275	0.81	-3.4
1,277,008	-		IAI47_06275	0.81	-3.7
1,277,008	-		IAI47_06275	0.81	-3.5
1,277,008	-		IAI47_06275	0.81	-2.8
1,277,071	-		IAI47_06275	0.85	-2.0
1,277,071	-		IAI47_06275	0.85	-4.1
1,277,172	+				-3.5
1,277,172	+				-2.7
1,277,172	+				-0.8
1,277,173	-				-3.0
1,277,176	+				-2.8
1,277,177	-				-2.8
1,277,177	-				-2.9
1,277,177	-				-1.9
1,277,177	-				-4.3
1,277,177	-				-2.0
1,277,177	-				-2.0
1,277,177	-				-2.7
1,277,177	-				-3.9
1,277,177	-				-1.8
1,277,203	+				-2.1
1,277,203	+				-0.5
1,277,203	+				-2.4
1,277,204	-				-2.8
1,277,213	-				-1.5
1,277,299	+				-0.5
1,277,299	+				-0.2
1,277,300	-				-0.3
1,277,300	-				+1.5
1,277,300	-				-1.5
1,277,300	-				-1.7
1,277,321	+				-0.4
1,277,321	+				-0.5
1,277,321	+				+0.1
1,277,321	+				-0.1
1,277,322	-				+0.7
1,277,322	-				+0.6
1,277,322	-				+0.9
1,277,322	-				+0.1
1,277,377	+				-0.1
1,277,377	+				+2.5
1,277,378	-				-0.4
1,277,378	-				+0.1
1,277,378	-				+0.3
1,277,410	+				+1.1
1,277,410	+				+0.1
1,277,978	+				-1.7
1,277,978	+				+0.4
1,277,979	-				-0.2
1,277,979	-				-0.4
1,277,979	-				+0.5
1,277,998	+				+0.2
1,277,998	+				+0.7
1,277,998	+				+0.4
1,277,998	+				-0.2
1,277,998	+				+0.3
1,277,999	-				+0.2
1,277,999	-				-0.2
1,277,999	-				+0.1
1,278,003	-				+1.4
1,278,009	+				+0.0
1,278,009	+				-1.0
1,278,010	-				-0.6
1,278,056	-				+1.1
1,278,079	-				+0.4
1,278,089	+				-0.0
1,278,089	+				+0.6
1,278,089	+				-0.0
1,278,089	+				-0.9
1,278,089	+				-0.7
1,278,089	+				+0.5
1,278,090	-				-0.3
1,278,090	-				-0.5
1,278,090	-				-0.1
1,278,090	-				-1.9
1,278,091	+				+2.4
1,278,091	+				+1.3
1,278,092	-				-0.0
1,278,092	-				+1.8
1,278,092	-				-0.1
1,278,092	-				-1.6
1,278,092	-				+0.7
1,278,136	+				-1.8
1,278,180	+				-0.8
1,278,209	+				-0.2
1,278,210	-				-1.1
1,278,210	-				+0.7
1,278,210	-				-0.3
1,278,234	+				-0.2
1,278,234	+				+1.0
1,278,234	+				+0.2
1,278,234	+				+1.1
1,278,235	-				-0.0
1,278,235	-				+0.3
1,278,240	-				+1.8
1,278,280	+				-2.0
1,278,281	-				+0.8
1,278,298	+				-0.2
1,278,298	+				-0.5
1,278,298	+				-1.2
1,278,299	-				-0.2
1,278,345	+		IAI47_06285	0.13	+0.1
1,278,346	-		IAI47_06285	0.14	+0.3
1,278,346	-		IAI47_06285	0.14	+0.3
1,278,346	-		IAI47_06285	0.14	+0.5
1,278,382	+		IAI47_06285	0.18	+1.0
1,278,383	-		IAI47_06285	0.18	-0.6
1,278,420	-		IAI47_06285	0.23	-0.4
1,278,420	-		IAI47_06285	0.23	-0.1
1,278,425	+		IAI47_06285	0.24	+0.5
1,278,425	+		IAI47_06285	0.24	+0.8
1,278,425	+		IAI47_06285	0.24	+0.1
1,278,426	-		IAI47_06285	0.24	+2.1
1,278,426	-		IAI47_06285	0.24	-0.6
1,278,426	-		IAI47_06285	0.24	+0.8
1,278,431	+		IAI47_06285	0.24	-0.8
1,278,431	+		IAI47_06285	0.24	-0.7
1,278,444	+		IAI47_06285	0.26	-0.2
1,278,444	+		IAI47_06285	0.26	-0.8
1,278,445	-		IAI47_06285	0.26	+0.1
1,278,445	-		IAI47_06285	0.26	+2.1
1,278,445	-		IAI47_06285	0.26	-0.9
1,278,445	-		IAI47_06285	0.26	+0.5
1,278,445	-		IAI47_06285	0.26	+0.1
1,278,560	+		IAI47_06285	0.41	-0.5
1,278,567	+		IAI47_06285	0.42	+1.8
1,278,567	+		IAI47_06285	0.42	-0.5
1,278,568	-		IAI47_06285	0.42	+0.2
1,278,568	-		IAI47_06285	0.42	+1.8
1,278,575	+		IAI47_06285	0.43	+0.2
1,278,576	-		IAI47_06285	0.43	+1.5
1,278,576	-		IAI47_06285	0.43	-0.2
1,278,587	-		IAI47_06285	0.44	+0.8
1,278,587	-		IAI47_06285	0.44	-0.6
1,278,679	-		IAI47_06285	0.56	-0.5
1,278,679	-		IAI47_06285	0.56	-0.8
1,278,679	-		IAI47_06285	0.56	+0.1
1,278,679	-		IAI47_06285	0.56	-1.5
1,278,679	-		IAI47_06285	0.56	-0.2
1,278,679	-		IAI47_06285	0.56	-0.8
1,278,702	-		IAI47_06285	0.59	-0.8
1,278,723	+		IAI47_06285	0.62	+1.0
1,278,723	+		IAI47_06285	0.62	+0.5
1,278,723	+		IAI47_06285	0.62	-0.3
1,278,723	+		IAI47_06285	0.62	-1.8
1,278,724	-		IAI47_06285	0.62	+1.1
1,278,724	-		IAI47_06285	0.62	-0.2
1,278,724	-		IAI47_06285	0.62	-0.2
1,278,724	-		IAI47_06285	0.62	+1.2
1,278,728	+		IAI47_06285	0.62	+0.8
1,278,728	+		IAI47_06285	0.62	-1.2
1,278,728	+		IAI47_06285	0.62	-0.2
1,278,729	-		IAI47_06285	0.62	+0.5
1,278,729	-		IAI47_06285	0.62	+0.2
1,278,729	-		IAI47_06285	0.62	-1.2
1,278,745	-		IAI47_06285	0.64	+0.7
1,278,767	+		IAI47_06285	0.67	-0.7
1,278,768	-		IAI47_06285	0.67	+1.8
1,278,830	+		IAI47_06285	0.75	+0.8
1,278,831	-		IAI47_06285	0.75	-1.4
1,278,838	-		IAI47_06285	0.76	+0.5
1,278,894	-		IAI47_06285	0.84	-0.7
1,278,905	+		IAI47_06285	0.85	+0.1
1,278,906	-		IAI47_06285	0.85	-0.5
1,278,906	-		IAI47_06285	0.85	+0.8
1,278,959	+				+1.4
1,278,959	+				+1.6
1,278,960	-				-2.4
1,278,960	-				+0.3
1,278,972	+				+0.3