Strain Fitness in Pantoea sp. MT58 around IAI47_04935

Experiment: Ying_AminoAcid20 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 2
1,035,357	+		IAI47_04930	0.89	-0.8
1,035,447	+				-2.3
1,035,447	+				-3.2
1,035,447	+				-2.8
1,035,447	+				-2.5
1,035,447	+				-1.8
1,035,447	+				-3.5
1,035,447	+				-3.3
1,035,447	+				-3.6
1,035,447	+				-2.3
1,035,447	+				-2.6
1,035,447	+				-3.7
1,035,447	+				-2.5
1,035,447	+				-3.9
1,035,447	+				-3.8
1,035,447	+				-3.8
1,035,447	+				-2.0
1,035,447	+				-2.5
1,035,447	+				-2.3
1,035,447	+				-0.2
1,035,448	-				-0.2
1,035,448	-				-0.8
1,035,448	-				-2.2
1,035,448	-				-0.8
1,035,448	-				-3.7
1,035,448	-				-2.0
1,035,448	-				-2.0
1,035,448	-				-0.2
1,035,448	-				-1.2
1,035,448	-				-2.3
1,035,448	-				-2.6
1,035,448	-				-5.1
1,035,448	-				-2.6
1,035,448	-				-0.2
1,035,448	-				-2.6
1,035,448	-				-0.8
1,035,448	-				-3.3
1,035,448	-				-2.3
1,035,448	-				-4.0
1,035,448	-				-3.1
1,035,448	-				-2.5
1,035,448	-				-2.3
1,035,448	-				-2.8
1,035,448	-				-2.9
1,035,453	+				-2.5
1,035,453	+				-1.8
1,035,552	+				-2.9
1,035,553	-				-3.0
1,035,585	+				-4.0
1,035,603	+				-2.0
1,035,603	+				-3.9
1,035,603	+				-2.8
1,035,604	-				-2.5
1,035,648	+				-1.5
1,035,648	+				-3.6
1,035,648	+				-1.5
1,035,648	+				-2.6
1,035,648	+				-1.5
1,035,649	-				-1.2
1,035,649	-				-2.8
1,035,649	-				-2.9
1,035,649	-				-4.3
1,035,649	-				-2.5
1,035,766	+				-0.3
1,035,766	+				+0.0
1,035,766	+				+1.4
1,035,771	+				+0.3
1,035,771	+				+2.4
1,035,771	+				-0.0
1,035,771	+				+0.8
1,035,771	+				-0.5
1,035,771	+				-1.0
1,035,771	+				+1.7
1,035,771	+				-1.0
1,035,771	+				-0.9
1,035,772	-				-0.1
1,035,772	-				-0.2
1,035,772	-				-0.9
1,035,772	-				-0.8
1,035,893	+				+1.5
1,035,919	+				-1.3
1,035,919	+				-0.7
1,036,046	+				-0.5
1,036,047	-				-0.0
1,036,047	-				+0.8
1,036,047	-				+0.8
1,036,070	+				-1.0
1,036,070	+				-0.4
1,036,071	-				+2.0
1,036,071	-				+0.8
1,036,071	-				-0.9
1,036,093	-				+1.0
1,036,102	+				-0.5
1,036,102	+				+0.2
1,036,102	+				-1.2
1,036,102	+				-0.0
1,036,103	-				-0.6
1,036,103	-				-0.0
1,036,103	-				+0.1
1,036,164	-				+0.8
1,036,179	+				-0.3
1,036,179	+				-1.2
1,036,180	-				-0.3
1,036,190	-				-0.4
1,036,190	-				+0.1
1,036,206	+				-0.3
1,036,206	+				-0.2
1,036,312	+				-0.2
1,036,313	-				+1.6
1,036,326	+				+0.1
1,036,326	+				+0.6
1,036,326	+				-1.2
1,036,326	+				+0.8
1,036,327	-				+0.3
1,036,333	+				+0.9
1,036,334	-				+0.2
1,036,364	+				+0.0
1,036,365	-				+0.8
1,036,365	-				-0.6
1,036,365	-				+0.6
1,036,419	-				-0.8
1,036,431	-				-0.8
1,036,431	-				+1.1
1,036,466	+				-0.3
1,036,467	-				+0.6
1,036,485	+				+0.5
1,036,486	-				+0.5
1,036,486	-				-1.2
1,036,488	+				+0.3
1,036,488	+				-0.1
1,036,489	-				-0.0
1,036,544	+		IAI47_04935	0.14	+0.3
1,036,562	-		IAI47_04935	0.15	-0.8
1,036,562	-		IAI47_04935	0.15	+0.2
1,036,570	+		IAI47_04935	0.16	-1.0
1,036,570	+		IAI47_04935	0.16	+0.0
1,036,571	-		IAI47_04935	0.16	-1.5
1,036,571	-		IAI47_04935	0.16	-0.0
1,036,607	-		IAI47_04935	0.18	+0.6
1,036,618	+		IAI47_04935	0.19	-0.5
1,036,627	+		IAI47_04935	0.20	-0.2
1,036,628	-		IAI47_04935	0.20	+0.1
1,036,728	+		IAI47_04935	0.27	-0.4
1,036,743	+		IAI47_04935	0.28	-0.6
1,036,743	+		IAI47_04935	0.28	+0.8
1,036,743	+		IAI47_04935	0.28	+0.5
1,036,743	+		IAI47_04935	0.28	-0.4
1,036,744	-		IAI47_04935	0.28	+0.8
1,036,780	-		IAI47_04935	0.30	+1.2
1,036,783	-		IAI47_04935	0.30	-0.4
1,036,783	-		IAI47_04935	0.30	-0.6
1,036,832	+		IAI47_04935	0.34	+0.2
1,036,832	+		IAI47_04935	0.34	-0.8
1,036,832	+		IAI47_04935	0.34	+1.2
1,036,832	+		IAI47_04935	0.34	-2.5
1,036,833	-		IAI47_04935	0.34	+0.5
1,036,833	-		IAI47_04935	0.34	+0.5
1,036,896	+		IAI47_04935	0.38	-0.3
1,036,896	+		IAI47_04935	0.38	-1.2
1,036,896	+		IAI47_04935	0.38	-0.9
1,036,897	-		IAI47_04935	0.38	-1.4
1,036,897	-		IAI47_04935	0.38	+0.7
1,037,001	+		IAI47_04935	0.46	+1.3
1,037,033	+		IAI47_04935	0.48	+0.3
1,037,034	-		IAI47_04935	0.48	-0.1
1,037,223	+		IAI47_04935	0.61	+2.2
1,037,223	+		IAI47_04935	0.61	-0.6
1,037,278	+		IAI47_04935	0.65	-1.2
1,037,278	+		IAI47_04935	0.65	+1.9
1,037,401	-		IAI47_04935	0.74	+0.1
1,037,457	+		IAI47_04935	0.78	+0.1
1,037,458	-		IAI47_04935	0.78	+0.3
1,037,482	+		IAI47_04935	0.79	-0.9
1,037,482	+		IAI47_04935	0.79	-0.8
1,037,482	+		IAI47_04935	0.79	-0.5
1,037,482	+		IAI47_04935	0.79	-1.4
1,037,483	-		IAI47_04935	0.79	+1.2
1,037,483	-		IAI47_04935	0.79	-1.5
1,037,640	-				-1.1
1,037,664	+				+1.1
1,037,664	+				-0.0
1,037,664	+				-1.2
1,037,665	-				-0.7
1,037,665	-				+0.8
1,037,785	+				-0.5
1,037,785	+				+0.3
1,037,786	-				+0.8
1,037,786	-				-0.6
1,037,786	-				+0.8
1,037,786	-				+0.0
1,037,790	-				-0.0
1,037,804	+				-0.6
1,037,804	+				+2.6
1,037,804	+				-0.3
1,037,804	+				-0.3
1,037,805	-				+0.2
1,037,805	-				+0.8
1,037,838	+				+0.1
1,037,838	+				-0.7
1,037,838	+				-1.1
1,037,838	+				+0.2
1,037,838	+				-0.2
1,037,838	+				+0.8
1,037,839	-				+1.7
1,037,839	-				+0.2
1,037,839	-				-0.2
1,037,839	-				+0.7
1,037,839	-				-0.7
1,037,839	-				+0.5
1,037,839	-				+0.6
1,037,839	-				+0.3
1,037,839	-				-1.8
1,037,839	-				-0.3
1,037,840	-				+0.2
1,037,912	-		IAI47_04940	0.20	-0.2
1,037,912	-		IAI47_04940	0.20	+0.8
1,037,912	-		IAI47_04940	0.20	+1.2
1,037,946	-		IAI47_04940	0.25	+0.3
1,037,946	-		IAI47_04940	0.25	+0.0
1,037,968	-		IAI47_04940	0.28	-1.1
1,037,968	-		IAI47_04940	0.28	+0.0
1,037,977	+		IAI47_04940	0.30	-0.6
1,037,978	-		IAI47_04940	0.30	+0.8
1,038,075	+		IAI47_04940	0.44	-0.1
1,038,075	+		IAI47_04940	0.44	+1.8
1,038,076	-		IAI47_04940	0.44	-0.2
1,038,096	+		IAI47_04940	0.47	-1.6
1,038,096	+		IAI47_04940	0.47	-0.4
1,038,096	+		IAI47_04940	0.47	+0.0
1,038,096	+		IAI47_04940	0.47	-0.2
1,038,097	-		IAI47_04940	0.48	-0.6
1,038,097	-		IAI47_04940	0.48	+0.2
1,038,097	-		IAI47_04940	0.48	-2.0
1,038,097	-		IAI47_04940	0.48	+0.2
1,038,130	+		IAI47_04940	0.52	+0.1
1,038,130	+		IAI47_04940	0.52	-1.4
1,038,130	+		IAI47_04940	0.52	-1.5
1,038,131	-		IAI47_04940	0.53	+0.0
1,038,131	-		IAI47_04940	0.53	-0.2
1,038,131	-		IAI47_04940	0.53	-0.5
1,038,131	-		IAI47_04940	0.53	+0.1
1,038,131	-		IAI47_04940	0.53	+1.2
1,038,131	-		IAI47_04940	0.53	+0.6
1,038,247	+		IAI47_04940	0.70	+1.6
1,038,247	+		IAI47_04940	0.70	-0.2
1,038,247	+		IAI47_04940	0.70	-1.6
1,038,248	-		IAI47_04940	0.70	+1.0
1,038,248	-		IAI47_04940	0.70	-0.2
1,038,274	-		IAI47_04940	0.74	-0.0
1,038,274	-		IAI47_04940	0.74	-1.2
1,038,306	+		IAI47_04940	0.79	+2.8
1,038,307	-		IAI47_04940	0.79	-0.1
1,038,339	+		IAI47_04940	0.84	-0.2
1,038,339	+		IAI47_04940	0.84	-1.3
1,038,339	+		IAI47_04940	0.84	+0.8
1,038,339	+		IAI47_04940	0.84	+0.2
1,038,339	+		IAI47_04940	0.84	+0.3
1,038,340	-		IAI47_04940	0.84	-0.0
1,038,340	-		IAI47_04940	0.84	-0.3
1,038,340	-		IAI47_04940	0.84	-0.6
1,038,340	-		IAI47_04940	0.84	-1.6
1,038,340	-		IAI47_04940	0.84	+0.1
1,038,340	-		IAI47_04940	0.84	-0.6
1,038,384	+				+0.7
1,038,385	-				+0.1
1,038,417	+				-0.8
1,038,417	+				+0.0
1,038,417	+				-0.8
1,038,607	+		IAI47_04945	0.12	+0.1
1,038,608	-		IAI47_04945	0.12	+0.6
1,038,608	-		IAI47_04945	0.12	-0.8
1,038,608	-		IAI47_04945	0.12	+0.7
1,038,608	-		IAI47_04945	0.12	+0.0
1,038,690	-		IAI47_04945	0.18	-0.2
1,038,745	+		IAI47_04945	0.22	+0.6
1,038,745	+		IAI47_04945	0.22	-0.4
1,038,745	+		IAI47_04945	0.22	+0.2
1,038,746	-		IAI47_04945	0.23	-0.7
1,038,746	-		IAI47_04945	0.23	-1.3