Experiment: Ying_AminoAcid20 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_04720 and IAI47_04725 overlap by 14 nucleotides IAI47_04725 and IAI47_04730 are separated by 200 nucleotides
IAI47_04720: IAI47_04720 - endonuclease/exonuclease/phosphatase family protein, at 995,108 to 996,028
_04720
IAI47_04725: IAI47_04725 - hypothetical protein, at 996,015 to 996,479
_04725
IAI47_04730: IAI47_04730 - toprim domain-containing protein, at 996,680 to 998,995
_04730
Position (kb) 996
997 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 995.024 kb on + strand at 995.025 kb on - strand at 995.033 kb on + strand at 995.033 kb on + strand at 995.034 kb on - strand at 995.034 kb on - strand at 995.062 kb on - strand at 995.062 kb on - strand at 995.082 kb on - strand at 995.082 kb on - strand at 995.085 kb on + strand at 995.085 kb on + strand at 995.086 kb on - strand at 995.127 kb on + strand at 995.127 kb on + strand at 995.131 kb on + strand at 995.131 kb on + strand at 995.132 kb on - strand at 995.132 kb on - strand at 995.132 kb on - strand at 995.133 kb on + strand at 995.133 kb on + strand at 995.133 kb on + strand at 995.133 kb on + strand at 995.133 kb on + strand at 995.133 kb on + strand at 995.134 kb on - strand at 995.134 kb on - strand at 995.134 kb on - strand at 995.147 kb on - strand at 995.194 kb on + strand at 995.194 kb on + strand at 995.195 kb on - strand at 995.201 kb on + strand, within IAI47_04720 at 995.202 kb on - strand, within IAI47_04720 at 995.214 kb on + strand, within IAI47_04720 at 995.217 kb on + strand, within IAI47_04720 at 995.217 kb on + strand, within IAI47_04720 at 995.251 kb on + strand, within IAI47_04720 at 995.251 kb on + strand, within IAI47_04720 at 995.251 kb on + strand, within IAI47_04720 at 995.253 kb on + strand, within IAI47_04720 at 995.253 kb on + strand, within IAI47_04720 at 995.254 kb on - strand, within IAI47_04720 at 995.259 kb on + strand, within IAI47_04720 at 995.260 kb on - strand, within IAI47_04720 at 995.260 kb on - strand, within IAI47_04720 at 995.290 kb on + strand, within IAI47_04720 at 995.317 kb on + strand, within IAI47_04720 at 995.322 kb on + strand, within IAI47_04720 at 995.325 kb on - strand, within IAI47_04720 at 995.334 kb on + strand, within IAI47_04720 at 995.335 kb on - strand, within IAI47_04720 at 995.335 kb on - strand, within IAI47_04720 at 995.362 kb on + strand, within IAI47_04720 at 995.364 kb on + strand, within IAI47_04720 at 995.364 kb on + strand, within IAI47_04720 at 995.364 kb on + strand, within IAI47_04720 at 995.365 kb on - strand, within IAI47_04720 at 995.370 kb on + strand, within IAI47_04720 at 995.437 kb on + strand, within IAI47_04720 at 995.447 kb on + strand, within IAI47_04720 at 995.574 kb on + strand, within IAI47_04720 at 995.574 kb on + strand, within IAI47_04720 at 995.574 kb on + strand, within IAI47_04720 at 995.621 kb on - strand, within IAI47_04720 at 995.700 kb on + strand, within IAI47_04720 at 995.700 kb on + strand, within IAI47_04720 at 995.700 kb on + strand, within IAI47_04720 at 995.700 kb on + strand, within IAI47_04720 at 995.706 kb on + strand, within IAI47_04720 at 995.707 kb on - strand, within IAI47_04720 at 995.707 kb on - strand, within IAI47_04720 at 995.727 kb on + strand, within IAI47_04720 at 995.733 kb on - strand, within IAI47_04720 at 995.777 kb on - strand, within IAI47_04720 at 995.810 kb on + strand, within IAI47_04720 at 995.811 kb on - strand, within IAI47_04720 at 995.811 kb on - strand, within IAI47_04720 at 995.814 kb on - strand, within IAI47_04720 at 995.833 kb on + strand, within IAI47_04720 at 995.880 kb on + strand, within IAI47_04720 at 995.948 kb on + strand at 995.953 kb on - strand at 996.099 kb on - strand, within IAI47_04725 at 996.100 kb on + strand, within IAI47_04725 at 996.166 kb on + strand, within IAI47_04725 at 996.166 kb on + strand, within IAI47_04725 at 996.171 kb on - strand, within IAI47_04725 at 996.214 kb on + strand, within IAI47_04725 at 996.303 kb on + strand, within IAI47_04725 at 996.304 kb on - strand, within IAI47_04725 at 996.305 kb on + strand, within IAI47_04725 at 996.306 kb on - strand, within IAI47_04725 at 996.306 kb on - strand, within IAI47_04725 at 996.340 kb on + strand, within IAI47_04725 at 996.341 kb on - strand, within IAI47_04725 at 996.413 kb on + strand, within IAI47_04725 at 996.463 kb on + strand at 996.467 kb on + strand at 996.505 kb on + strand at 996.506 kb on - strand at 996.510 kb on + strand at 996.511 kb on - strand at 996.511 kb on - strand at 996.512 kb on + strand at 996.512 kb on + strand at 996.512 kb on + strand at 996.513 kb on - strand at 996.513 kb on - strand at 996.538 kb on - strand at 996.558 kb on + strand at 996.559 kb on - strand at 996.559 kb on - strand at 996.559 kb on - strand at 996.561 kb on + strand at 996.561 kb on + strand at 996.561 kb on + strand at 996.561 kb on + strand at 996.562 kb on - strand at 996.562 kb on - strand at 996.583 kb on + strand at 996.583 kb on + strand at 996.583 kb on + strand at 996.583 kb on + strand at 996.584 kb on - strand at 996.584 kb on - strand at 996.584 kb on - strand at 996.584 kb on - strand at 996.590 kb on + strand at 996.590 kb on + strand at 996.590 kb on + strand at 996.590 kb on + strand at 996.590 kb on + strand at 996.591 kb on - strand at 996.591 kb on - strand at 996.591 kb on - strand at 996.593 kb on + strand at 996.593 kb on + strand at 996.593 kb on + strand at 996.593 kb on + strand at 996.594 kb on - strand at 996.594 kb on - strand at 996.594 kb on - strand at 996.605 kb on + strand at 996.628 kb on + strand at 996.629 kb on - strand at 996.677 kb on - strand at 996.677 kb on - strand at 996.677 kb on - strand at 996.681 kb on + strand at 996.681 kb on + strand at 996.681 kb on + strand at 996.682 kb on - strand at 996.682 kb on - strand at 996.682 kb on - strand at 996.682 kb on - strand at 996.682 kb on - strand at 996.730 kb on + strand at 996.730 kb on + strand at 996.730 kb on + strand at 996.731 kb on - strand at 996.751 kb on + strand at 996.752 kb on - strand at 996.752 kb on - strand at 996.766 kb on + strand at 996.767 kb on - strand at 996.767 kb on - strand at 996.774 kb on - strand at 996.783 kb on + strand at 996.783 kb on + strand at 996.783 kb on + strand at 996.784 kb on - strand at 996.784 kb on - strand at 996.784 kb on - strand at 996.859 kb on + strand at 996.860 kb on - strand at 996.860 kb on - strand at 996.866 kb on + strand at 996.866 kb on + strand at 996.866 kb on + strand at 996.866 kb on + strand at 996.867 kb on - strand at 996.870 kb on + strand at 996.870 kb on + strand at 996.870 kb on + strand at 996.870 kb on + strand at 996.870 kb on + strand at 996.870 kb on + strand at 996.870 kb on + strand at 996.870 kb on + strand at 996.870 kb on + strand at 996.870 kb on + strand at 996.870 kb on + strand at 996.870 kb on + strand at 996.870 kb on + strand at 996.871 kb on - strand at 996.871 kb on - strand at 996.871 kb on - strand at 996.871 kb on - strand at 996.871 kb on - strand at 996.871 kb on - strand at 996.871 kb on - strand at 996.871 kb on - strand at 996.871 kb on - strand at 996.871 kb on - strand at 996.871 kb on - strand at 996.871 kb on - strand at 996.871 kb on - strand at 996.871 kb on - strand at 996.871 kb on - strand at 996.879 kb on + strand at 996.879 kb on + strand at 996.880 kb on - strand at 996.886 kb on - strand at 996.886 kb on - strand at 996.886 kb on - strand at 996.925 kb on + strand, within IAI47_04730 at 996.925 kb on + strand, within IAI47_04730 at 996.960 kb on + strand, within IAI47_04730 at 996.997 kb on + strand, within IAI47_04730 at 997.226 kb on - strand, within IAI47_04730 at 997.226 kb on - strand, within IAI47_04730 at 997.226 kb on - strand, within IAI47_04730 at 997.263 kb on + strand, within IAI47_04730 at 997.264 kb on - strand, within IAI47_04730 at 997.264 kb on - strand, within IAI47_04730 at 997.264 kb on - strand, within IAI47_04730 at 997.264 kb on - strand, within IAI47_04730 at 997.363 kb on + strand, within IAI47_04730 at 997.363 kb on + strand, within IAI47_04730 at 997.363 kb on + strand, within IAI47_04730 at 997.364 kb on - strand, within IAI47_04730 at 997.364 kb on - strand, within IAI47_04730 at 997.364 kb on - strand, within IAI47_04730
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 2 remove 995,024 + +1.3 995,025 - -0.2 995,033 + +1.8 995,033 + +0.8 995,034 - +0.4 995,034 - +0.5 995,062 - -2.1 995,062 - -0.5 995,082 - +0.4 995,082 - +0.4 995,085 + +0.3 995,085 + +0.8 995,086 - -0.3 995,127 + +0.7 995,127 + -1.0 995,131 + +0.3 995,131 + -0.3 995,132 - -0.0 995,132 - -0.0 995,132 - -0.5 995,133 + -2.2 995,133 + +0.4 995,133 + +0.0 995,133 + -1.4 995,133 + +0.0 995,133 + +0.5 995,134 - +0.2 995,134 - +0.8 995,134 - +0.8 995,147 - -0.5 995,194 + +0.2 995,194 + -0.6 995,195 - -0.3 995,201 + IAI47_04720 0.10 +1.1 995,202 - IAI47_04720 0.10 +1.2 995,214 + IAI47_04720 0.12 -0.6 995,217 + IAI47_04720 0.12 -0.6 995,217 + IAI47_04720 0.12 -1.2 995,251 + IAI47_04720 0.16 -0.9 995,251 + IAI47_04720 0.16 +0.4 995,251 + IAI47_04720 0.16 -0.7 995,253 + IAI47_04720 0.16 +0.5 995,253 + IAI47_04720 0.16 -0.7 995,254 - IAI47_04720 0.16 +0.6 995,259 + IAI47_04720 0.16 +1.4 995,260 - IAI47_04720 0.17 -0.6 995,260 - IAI47_04720 0.17 -1.2 995,290 + IAI47_04720 0.20 -2.3 995,317 + IAI47_04720 0.23 -0.9 995,322 + IAI47_04720 0.23 +1.0 995,325 - IAI47_04720 0.24 -1.5 995,334 + IAI47_04720 0.25 -2.6 995,335 - IAI47_04720 0.25 -0.6 995,335 - IAI47_04720 0.25 -1.4 995,362 + IAI47_04720 0.28 -0.6 995,364 + IAI47_04720 0.28 +0.4 995,364 + IAI47_04720 0.28 -0.3 995,364 + IAI47_04720 0.28 -1.0 995,365 - IAI47_04720 0.28 -0.2 995,370 + IAI47_04720 0.28 -0.2 995,437 + IAI47_04720 0.36 +1.1 995,447 + IAI47_04720 0.37 -1.5 995,574 + IAI47_04720 0.51 -0.8 995,574 + IAI47_04720 0.51 +1.3 995,574 + IAI47_04720 0.51 +0.4 995,621 - IAI47_04720 0.56 -0.6 995,700 + IAI47_04720 0.64 +0.3 995,700 + IAI47_04720 0.64 +0.2 995,700 + IAI47_04720 0.64 -0.2 995,700 + IAI47_04720 0.64 -0.6 995,706 + IAI47_04720 0.65 -0.5 995,707 - IAI47_04720 0.65 -0.2 995,707 - IAI47_04720 0.65 +1.2 995,727 + IAI47_04720 0.67 -1.5 995,733 - IAI47_04720 0.68 +0.7 995,777 - IAI47_04720 0.73 -2.7 995,810 + IAI47_04720 0.76 -0.4 995,811 - IAI47_04720 0.76 -0.2 995,811 - IAI47_04720 0.76 +0.5 995,814 - IAI47_04720 0.77 +0.8 995,833 + IAI47_04720 0.79 +1.6 995,880 + IAI47_04720 0.84 +0.3 995,948 + -1.3 995,953 - +0.4 996,099 - IAI47_04725 0.18 +0.1 996,100 + IAI47_04725 0.18 -0.8 996,166 + IAI47_04725 0.32 -0.2 996,166 + IAI47_04725 0.32 +0.8 996,171 - IAI47_04725 0.34 -0.4 996,214 + IAI47_04725 0.43 -0.6 996,303 + IAI47_04725 0.62 +0.3 996,304 - IAI47_04725 0.62 +1.2 996,305 + IAI47_04725 0.62 +0.1 996,306 - IAI47_04725 0.63 +0.1 996,306 - IAI47_04725 0.63 +0.5 996,340 + IAI47_04725 0.70 -0.5 996,341 - IAI47_04725 0.70 -0.0 996,413 + IAI47_04725 0.86 +0.6 996,463 + -0.2 996,467 + +0.0 996,505 + +0.3 996,506 - +0.2 996,510 + -0.2 996,511 - +0.5 996,511 - +0.1 996,512 + -1.5 996,512 + +0.1 996,512 + +0.8 996,513 - +2.2 996,513 - +0.8 996,538 - +0.4 996,558 + +0.6 996,559 - -0.7 996,559 - -0.4 996,559 - +0.0 996,561 + +0.6 996,561 + +1.0 996,561 + +0.4 996,561 + +0.1 996,562 - -0.6 996,562 - -1.2 996,583 + -0.4 996,583 + +0.4 996,583 + +0.5 996,583 + -1.2 996,584 - -0.3 996,584 - -1.0 996,584 - +1.4 996,584 - +0.5 996,590 + +0.6 996,590 + -0.8 996,590 + -0.6 996,590 + -0.5 996,590 + -0.7 996,591 - +0.7 996,591 - +1.0 996,591 - +0.8 996,593 + -0.2 996,593 + -0.7 996,593 + -0.7 996,593 + +0.2 996,594 - -1.0 996,594 - -2.0 996,594 - +1.4 996,605 + -0.4 996,628 + +1.3 996,629 - -1.0 996,677 - +0.8 996,677 - -0.2 996,677 - +0.4 996,681 + +1.8 996,681 + +0.0 996,681 + +0.8 996,682 - -0.5 996,682 - -0.9 996,682 - +0.7 996,682 - +1.3 996,682 - +1.4 996,730 + -0.4 996,730 + +0.1 996,730 + -0.2 996,731 - +0.4 996,751 + +0.8 996,752 - -0.4 996,752 - -0.2 996,766 + -0.2 996,767 - -0.8 996,767 - -0.2 996,774 - -0.4 996,783 + +1.8 996,783 + -0.4 996,783 + -0.4 996,784 - +0.6 996,784 - +1.3 996,784 - +0.8 996,859 + -0.2 996,860 - -0.3 996,860 - +0.3 996,866 + +1.2 996,866 + +0.5 996,866 + +0.8 996,866 + +0.4 996,867 - -0.0 996,870 + -0.9 996,870 + -0.1 996,870 + +0.1 996,870 + -0.2 996,870 + -0.3 996,870 + +1.6 996,870 + +1.1 996,870 + +0.1 996,870 + -1.5 996,870 + +1.0 996,870 + +1.6 996,870 + +0.2 996,870 + +0.5 996,871 - +0.4 996,871 - -0.2 996,871 - +0.3 996,871 - +0.4 996,871 - -3.3 996,871 - +0.5 996,871 - +0.2 996,871 - -0.1 996,871 - -0.2 996,871 - +1.4 996,871 - +1.0 996,871 - +0.4 996,871 - -2.3 996,871 - -0.3 996,871 - +0.9 996,879 + +0.2 996,879 + +1.3 996,880 - -1.2 996,886 - -0.4 996,886 - -0.5 996,886 - -0.0 996,925 + IAI47_04730 0.11 -1.5 996,925 + IAI47_04730 0.11 +0.1 996,960 + IAI47_04730 0.12 -0.9 996,997 + IAI47_04730 0.14 -2.5 997,226 - IAI47_04730 0.24 -0.5 997,226 - IAI47_04730 0.24 +0.6 997,226 - IAI47_04730 0.24 +1.2 997,263 + IAI47_04730 0.25 -0.6 997,264 - IAI47_04730 0.25 +0.6 997,264 - IAI47_04730 0.25 +1.2 997,264 - IAI47_04730 0.25 +0.2 997,264 - IAI47_04730 0.25 -0.5 997,363 + IAI47_04730 0.29 +1.1 997,363 + IAI47_04730 0.29 -2.0 997,363 + IAI47_04730 0.29 +0.0 997,364 - IAI47_04730 0.30 -0.3 997,364 - IAI47_04730 0.30 +0.2 997,364 - IAI47_04730 0.30 +0.2
Or see this region's nucleotide sequence