Strain Fitness in Pantoea sp. MT58 around IAI47_21740

Experiment: Ying_sugar7 rep C; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_21735 and IAI47_21740 are separated by 104 nucleotidesIAI47_21740 and IAI47_21745 are separated by 14 nucleotides IAI47_21735: IAI47_21735 - LysR family transcriptional regulator, at 90,379 to 91,272 _21735 IAI47_21740: IAI47_21740 - acetolactate decarboxylase, at 91,377 to 92,159 _21740 IAI47_21745: IAI47_21745 - acetolactate synthase AlsS, at 92,174 to 93,853 _21745 Position (kb) 91 92 93Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 90.380 kb on + strandat 90.380 kb on + strandat 90.380 kb on + strandat 90.381 kb on - strandat 90.381 kb on - strandat 90.574 kb on - strand, within IAI47_21735at 90.659 kb on + strand, within IAI47_21735at 90.659 kb on + strand, within IAI47_21735at 90.660 kb on - strand, within IAI47_21735at 90.660 kb on - strand, within IAI47_21735at 90.660 kb on - strand, within IAI47_21735at 90.660 kb on - strand, within IAI47_21735at 90.660 kb on - strand, within IAI47_21735at 90.735 kb on + strand, within IAI47_21735at 90.736 kb on - strand, within IAI47_21735at 90.742 kb on + strand, within IAI47_21735at 90.743 kb on - strand, within IAI47_21735at 90.851 kb on - strand, within IAI47_21735at 90.862 kb on + strand, within IAI47_21735at 90.862 kb on + strand, within IAI47_21735at 90.862 kb on + strand, within IAI47_21735at 90.862 kb on + strand, within IAI47_21735at 90.885 kb on + strand, within IAI47_21735at 90.885 kb on + strand, within IAI47_21735at 90.885 kb on + strand, within IAI47_21735at 90.885 kb on + strand, within IAI47_21735at 90.885 kb on + strand, within IAI47_21735at 90.885 kb on + strand, within IAI47_21735at 90.885 kb on + strand, within IAI47_21735at 90.886 kb on - strand, within IAI47_21735at 90.920 kb on + strand, within IAI47_21735at 90.931 kb on - strand, within IAI47_21735at 90.936 kb on + strand, within IAI47_21735at 90.937 kb on - strand, within IAI47_21735at 90.937 kb on - strand, within IAI47_21735at 90.937 kb on - strand, within IAI47_21735at 90.937 kb on - strand, within IAI47_21735at 90.963 kb on + strand, within IAI47_21735at 90.963 kb on + strand, within IAI47_21735at 90.964 kb on - strand, within IAI47_21735at 91.165 kb on + strand, within IAI47_21735at 91.165 kb on + strand, within IAI47_21735at 91.165 kb on + strand, within IAI47_21735at 91.166 kb on - strand, within IAI47_21735at 91.193 kb on - strandat 91.251 kb on - strandat 91.272 kb on + strandat 91.272 kb on + strandat 91.273 kb on - strandat 91.273 kb on - strandat 91.293 kb on - strandat 91.305 kb on + strandat 91.359 kb on + strandat 91.418 kb on - strandat 91.418 kb on - strandat 91.418 kb on - strandat 91.424 kb on + strandat 91.424 kb on + strandat 91.425 kb on - strandat 91.425 kb on - strandat 91.425 kb on - strandat 91.425 kb on - strandat 91.432 kb on + strandat 91.432 kb on + strandat 91.433 kb on - strandat 91.463 kb on + strand, within IAI47_21740at 91.463 kb on + strand, within IAI47_21740at 91.464 kb on - strand, within IAI47_21740at 91.464 kb on - strand, within IAI47_21740at 91.467 kb on + strand, within IAI47_21740at 91.468 kb on - strand, within IAI47_21740at 91.468 kb on - strand, within IAI47_21740at 91.468 kb on - strand, within IAI47_21740at 91.506 kb on + strand, within IAI47_21740at 91.507 kb on - strand, within IAI47_21740at 91.507 kb on - strand, within IAI47_21740at 91.514 kb on + strand, within IAI47_21740at 91.515 kb on - strand, within IAI47_21740at 91.611 kb on + strand, within IAI47_21740at 91.611 kb on + strand, within IAI47_21740at 91.611 kb on + strand, within IAI47_21740at 91.612 kb on - strand, within IAI47_21740at 91.790 kb on - strand, within IAI47_21740at 91.790 kb on - strand, within IAI47_21740at 91.886 kb on + strand, within IAI47_21740at 91.886 kb on + strand, within IAI47_21740at 91.886 kb on + strand, within IAI47_21740at 91.887 kb on - strand, within IAI47_21740at 91.887 kb on - strand, within IAI47_21740at 91.941 kb on + strand, within IAI47_21740at 91.941 kb on + strand, within IAI47_21740at 91.941 kb on + strand, within IAI47_21740at 91.941 kb on + strand, within IAI47_21740at 91.941 kb on + strand, within IAI47_21740at 91.941 kb on + strand, within IAI47_21740at 91.941 kb on + strand, within IAI47_21740at 91.941 kb on + strand, within IAI47_21740at 91.942 kb on - strand, within IAI47_21740at 91.942 kb on - strand, within IAI47_21740at 91.942 kb on - strand, within IAI47_21740at 91.942 kb on - strand, within IAI47_21740at 91.942 kb on - strand, within IAI47_21740at 91.942 kb on - strand, within IAI47_21740at 91.943 kb on + strand, within IAI47_21740at 91.943 kb on + strand, within IAI47_21740at 91.943 kb on + strand, within IAI47_21740at 91.943 kb on + strand, within IAI47_21740at 91.943 kb on + strand, within IAI47_21740at 91.943 kb on + strand, within IAI47_21740at 91.943 kb on + strand, within IAI47_21740at 91.943 kb on + strand, within IAI47_21740at 91.943 kb on + strand, within IAI47_21740at 91.943 kb on + strand, within IAI47_21740at 91.944 kb on - strand, within IAI47_21740at 91.944 kb on - strand, within IAI47_21740at 91.944 kb on - strand, within IAI47_21740at 91.944 kb on - strand, within IAI47_21740at 91.944 kb on - strand, within IAI47_21740at 91.944 kb on - strand, within IAI47_21740at 91.944 kb on - strand, within IAI47_21740at 91.944 kb on - strand, within IAI47_21740at 91.944 kb on - strand, within IAI47_21740at 91.944 kb on - strand, within IAI47_21740at 91.944 kb on - strand, within IAI47_21740at 91.944 kb on - strand, within IAI47_21740at 91.944 kb on - strand, within IAI47_21740at 91.944 kb on - strand, within IAI47_21740at 91.955 kb on + strand, within IAI47_21740at 91.956 kb on - strand, within IAI47_21740at 91.982 kb on + strand, within IAI47_21740at 91.983 kb on - strand, within IAI47_21740at 91.983 kb on - strand, within IAI47_21740at 91.986 kb on - strand, within IAI47_21740at 92.150 kb on - strandat 92.157 kb on + strandat 92.157 kb on + strandat 92.157 kb on + strandat 92.157 kb on + strandat 92.157 kb on + strandat 92.157 kb on + strandat 92.158 kb on - strandat 92.191 kb on + strandat 92.285 kb on + strandat 92.329 kb on - strandat 92.329 kb on - strandat 92.347 kb on + strand, within IAI47_21745at 92.348 kb on - strand, within IAI47_21745at 92.348 kb on - strand, within IAI47_21745at 92.359 kb on + strand, within IAI47_21745at 92.573 kb on + strand, within IAI47_21745at 92.573 kb on + strand, within IAI47_21745at 92.573 kb on + strand, within IAI47_21745at 92.574 kb on - strand, within IAI47_21745at 92.574 kb on - strand, within IAI47_21745at 92.665 kb on + strand, within IAI47_21745at 92.665 kb on + strand, within IAI47_21745at 92.666 kb on - strand, within IAI47_21745at 92.666 kb on - strand, within IAI47_21745at 92.684 kb on - strand, within IAI47_21745at 92.684 kb on - strand, within IAI47_21745at 92.684 kb on - strand, within IAI47_21745at 92.684 kb on - strand, within IAI47_21745at 92.722 kb on + strand, within IAI47_21745at 92.723 kb on - strand, within IAI47_21745at 92.739 kb on + strand, within IAI47_21745at 92.739 kb on + strand, within IAI47_21745at 92.739 kb on + strand, within IAI47_21745at 92.740 kb on - strand, within IAI47_21745at 92.740 kb on - strand, within IAI47_21745at 92.740 kb on - strand, within IAI47_21745at 92.740 kb on - strand, within IAI47_21745at 92.740 kb on - strand, within IAI47_21745at 92.808 kb on + strand, within IAI47_21745at 92.872 kb on + strand, within IAI47_21745at 92.872 kb on + strand, within IAI47_21745at 92.878 kb on + strand, within IAI47_21745at 92.879 kb on - strand, within IAI47_21745at 92.897 kb on + strand, within IAI47_21745at 92.897 kb on + strand, within IAI47_21745at 92.898 kb on - strand, within IAI47_21745at 92.898 kb on - strand, within IAI47_21745at 92.898 kb on - strand, within IAI47_21745at 92.962 kb on + strand, within IAI47_21745at 92.962 kb on + strand, within IAI47_21745at 92.962 kb on + strand, within IAI47_21745at 92.966 kb on - strand, within IAI47_21745at 92.966 kb on - strand, within IAI47_21745at 93.021 kb on - strand, within IAI47_21745at 93.035 kb on + strand, within IAI47_21745at 93.035 kb on + strand, within IAI47_21745at 93.035 kb on + strand, within IAI47_21745at 93.036 kb on - strand, within IAI47_21745at 93.036 kb on - strand, within IAI47_21745at 93.036 kb on - strand, within IAI47_21745at 93.114 kb on - strand, within IAI47_21745

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 2
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90,380 + +0.3
90,380 + -0.4
90,380 + +1.4
90,381 - -0.2
90,381 - -0.3
90,574 - IAI47_21735 0.22 -0.1
90,659 + IAI47_21735 0.31 +2.0
90,659 + IAI47_21735 0.31 +1.1
90,660 - IAI47_21735 0.31 -0.0
90,660 - IAI47_21735 0.31 -0.4
90,660 - IAI47_21735 0.31 +0.1
90,660 - IAI47_21735 0.31 +1.5
90,660 - IAI47_21735 0.31 +1.1
90,735 + IAI47_21735 0.40 -2.0
90,736 - IAI47_21735 0.40 +0.4
90,742 + IAI47_21735 0.41 -0.4
90,743 - IAI47_21735 0.41 +0.2
90,851 - IAI47_21735 0.53 -1.0
90,862 + IAI47_21735 0.54 -1.9
90,862 + IAI47_21735 0.54 -1.7
90,862 + IAI47_21735 0.54 -0.4
90,862 + IAI47_21735 0.54 +1.9
90,885 + IAI47_21735 0.57 -0.0
90,885 + IAI47_21735 0.57 -0.4
90,885 + IAI47_21735 0.57 +2.1
90,885 + IAI47_21735 0.57 -1.9
90,885 + IAI47_21735 0.57 +0.0
90,885 + IAI47_21735 0.57 -0.2
90,885 + IAI47_21735 0.57 +1.1
90,886 - IAI47_21735 0.57 -0.4
90,920 + IAI47_21735 0.61 -0.4
90,931 - IAI47_21735 0.62 +1.0
90,936 + IAI47_21735 0.62 -0.9
90,937 - IAI47_21735 0.62 -2.7
90,937 - IAI47_21735 0.62 -1.4
90,937 - IAI47_21735 0.62 -0.4
90,937 - IAI47_21735 0.62 +0.7
90,963 + IAI47_21735 0.65 -1.4
90,963 + IAI47_21735 0.65 -2.8
90,964 - IAI47_21735 0.65 -0.2
91,165 + IAI47_21735 0.88 +1.0
91,165 + IAI47_21735 0.88 +0.6
91,165 + IAI47_21735 0.88 +1.3
91,166 - IAI47_21735 0.88 -1.4
91,193 - +1.3
91,251 - -0.4
91,272 + +1.6
91,272 + +0.6
91,273 - +0.6
91,273 - +1.7
91,293 - +0.6
91,305 + +0.3
91,359 + -1.2
91,418 - -1.6
91,418 - -0.2
91,418 - -0.2
91,424 + +0.1
91,424 + +0.9
91,425 - -0.9
91,425 - +0.1
91,425 - +1.0
91,425 - -1.0
91,432 + +0.3
91,432 + +1.6
91,433 - +0.1
91,463 + IAI47_21740 0.11 +2.0
91,463 + IAI47_21740 0.11 +4.2
91,464 - IAI47_21740 0.11 -1.9
91,464 - IAI47_21740 0.11 +0.4
91,467 + IAI47_21740 0.11 +0.2
91,468 - IAI47_21740 0.12 -1.7
91,468 - IAI47_21740 0.12 +0.1
91,468 - IAI47_21740 0.12 -0.4
91,506 + IAI47_21740 0.16 -1.9
91,507 - IAI47_21740 0.17 +0.3
91,507 - IAI47_21740 0.17 +0.1
91,514 + IAI47_21740 0.17 +0.9
91,515 - IAI47_21740 0.18 +2.7
91,611 + IAI47_21740 0.30 +1.3
91,611 + IAI47_21740 0.30 +1.1
91,611 + IAI47_21740 0.30 +0.6
91,612 - IAI47_21740 0.30 -1.2
91,790 - IAI47_21740 0.53 -2.6
91,790 - IAI47_21740 0.53 +0.3
91,886 + IAI47_21740 0.65 +0.7
91,886 + IAI47_21740 0.65 -0.2
91,886 + IAI47_21740 0.65 +1.1
91,887 - IAI47_21740 0.65 +0.6
91,887 - IAI47_21740 0.65 +3.1
91,941 + IAI47_21740 0.72 -2.1
91,941 + IAI47_21740 0.72 -1.0
91,941 + IAI47_21740 0.72 -2.0
91,941 + IAI47_21740 0.72 +2.1
91,941 + IAI47_21740 0.72 +0.7
91,941 + IAI47_21740 0.72 +0.1
91,941 + IAI47_21740 0.72 +0.8
91,941 + IAI47_21740 0.72 -2.0
91,942 - IAI47_21740 0.72 -0.9
91,942 - IAI47_21740 0.72 -0.1
91,942 - IAI47_21740 0.72 -1.2
91,942 - IAI47_21740 0.72 -1.2
91,942 - IAI47_21740 0.72 -1.3
91,942 - IAI47_21740 0.72 +0.5
91,943 + IAI47_21740 0.72 +0.4
91,943 + IAI47_21740 0.72 +3.0
91,943 + IAI47_21740 0.72 +0.8
91,943 + IAI47_21740 0.72 -1.2
91,943 + IAI47_21740 0.72 +2.0
91,943 + IAI47_21740 0.72 +1.3
91,943 + IAI47_21740 0.72 -0.8
91,943 + IAI47_21740 0.72 +1.3
91,943 + IAI47_21740 0.72 +0.7
91,943 + IAI47_21740 0.72 +0.8
91,944 - IAI47_21740 0.72 +0.9
91,944 - IAI47_21740 0.72 -0.6
91,944 - IAI47_21740 0.72 -1.7
91,944 - IAI47_21740 0.72 +1.1
91,944 - IAI47_21740 0.72 -2.7
91,944 - IAI47_21740 0.72 -0.4
91,944 - IAI47_21740 0.72 +0.2
91,944 - IAI47_21740 0.72 -0.2
91,944 - IAI47_21740 0.72 -2.4
91,944 - IAI47_21740 0.72 -0.3
91,944 - IAI47_21740 0.72 +1.1
91,944 - IAI47_21740 0.72 +3.7
91,944 - IAI47_21740 0.72 -1.4
91,944 - IAI47_21740 0.72 +0.9
91,955 + IAI47_21740 0.74 -1.2
91,956 - IAI47_21740 0.74 +1.6
91,982 + IAI47_21740 0.77 -1.4
91,983 - IAI47_21740 0.77 +0.6
91,983 - IAI47_21740 0.77 -0.3
91,986 - IAI47_21740 0.78 +0.6
92,150 - -0.2
92,157 + -0.4
92,157 + -0.4
92,157 + -2.2
92,157 + -0.4
92,157 + -1.4
92,157 + +0.3
92,158 - -0.9
92,191 + -1.6
92,285 + +0.4
92,329 - -2.0
92,329 - +0.1
92,347 + IAI47_21745 0.10 -1.9
92,348 - IAI47_21745 0.10 -1.5
92,348 - IAI47_21745 0.10 -0.2
92,359 + IAI47_21745 0.11 +1.5
92,573 + IAI47_21745 0.24 +1.4
92,573 + IAI47_21745 0.24 +0.7
92,573 + IAI47_21745 0.24 -2.6
92,574 - IAI47_21745 0.24 -0.2
92,574 - IAI47_21745 0.24 -1.4
92,665 + IAI47_21745 0.29 -0.4
92,665 + IAI47_21745 0.29 -0.9
92,666 - IAI47_21745 0.29 -1.0
92,666 - IAI47_21745 0.29 +1.6
92,684 - IAI47_21745 0.30 +0.1
92,684 - IAI47_21745 0.30 -1.9
92,684 - IAI47_21745 0.30 +0.5
92,684 - IAI47_21745 0.30 +0.3
92,722 + IAI47_21745 0.33 +0.1
92,723 - IAI47_21745 0.33 +0.1
92,739 + IAI47_21745 0.34 -2.3
92,739 + IAI47_21745 0.34 -0.6
92,739 + IAI47_21745 0.34 -2.3
92,740 - IAI47_21745 0.34 -2.0
92,740 - IAI47_21745 0.34 +1.0
92,740 - IAI47_21745 0.34 -0.4
92,740 - IAI47_21745 0.34 +0.1
92,740 - IAI47_21745 0.34 -0.1
92,808 + IAI47_21745 0.38 -0.3
92,872 + IAI47_21745 0.42 -1.4
92,872 + IAI47_21745 0.42 -0.9
92,878 + IAI47_21745 0.42 -2.0
92,879 - IAI47_21745 0.42 -2.2
92,897 + IAI47_21745 0.43 +1.1
92,897 + IAI47_21745 0.43 +0.0
92,898 - IAI47_21745 0.43 -0.4
92,898 - IAI47_21745 0.43 -0.2
92,898 - IAI47_21745 0.43 -1.2
92,962 + IAI47_21745 0.47 -0.3
92,962 + IAI47_21745 0.47 +0.5
92,962 + IAI47_21745 0.47 +0.1
92,966 - IAI47_21745 0.47 -2.0
92,966 - IAI47_21745 0.47 +1.1
93,021 - IAI47_21745 0.50 -0.4
93,035 + IAI47_21745 0.51 -0.4
93,035 + IAI47_21745 0.51 +0.5
93,035 + IAI47_21745 0.51 +2.2
93,036 - IAI47_21745 0.51 +0.1
93,036 - IAI47_21745 0.51 +1.1
93,036 - IAI47_21745 0.51 -2.8
93,114 - IAI47_21745 0.56 +1.5

Or see this region's nucleotide sequence