Experiment: Ying_sugar7 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_21275 and IAI47_21280 are separated by 6 nucleotides IAI47_21280 and IAI47_21285 are separated by 21 nucleotides IAI47_21285 and IAI47_21290 are separated by 240 nucleotides IAI47_21290 and IAI47_21295 are separated by 149 nucleotides
IAI47_21275: IAI47_21275 - ABC transporter permease subunit, at 511,173 to 511,898
_21275
IAI47_21280: IAI47_21280 - amino acid ABC transporter substrate-binding protein, at 511,905 to 512,753
_21280
IAI47_21285: IAI47_21285 - amidohydrolase, at 512,775 to 513,962
_21285
IAI47_21290: IAI47_21290 - alpha/beta hydrolase, at 514,203 to 514,680
_21290
IAI47_21295: IAI47_21295 - DJ-1/PfpI family protein, at 514,830 to 515,549
_21295
Position (kb) 512
513
514 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 511.806 kb on + strand, within IAI47_21275 at 511.817 kb on + strand, within IAI47_21275 at 511.817 kb on + strand, within IAI47_21275 at 511.818 kb on - strand, within IAI47_21275 at 511.873 kb on - strand at 511.873 kb on - strand at 511.886 kb on + strand at 511.886 kb on + strand at 511.886 kb on + strand at 511.886 kb on + strand at 511.887 kb on - strand at 511.887 kb on - strand at 511.906 kb on + strand at 511.906 kb on + strand at 511.906 kb on + strand at 511.906 kb on + strand at 512.084 kb on + strand, within IAI47_21280 at 512.197 kb on + strand, within IAI47_21280 at 512.197 kb on + strand, within IAI47_21280 at 512.197 kb on + strand, within IAI47_21280 at 512.197 kb on + strand, within IAI47_21280 at 512.197 kb on + strand, within IAI47_21280 at 512.197 kb on + strand, within IAI47_21280 at 512.197 kb on + strand, within IAI47_21280 at 512.227 kb on + strand, within IAI47_21280 at 512.285 kb on + strand, within IAI47_21280 at 512.419 kb on + strand, within IAI47_21280 at 512.420 kb on - strand, within IAI47_21280 at 512.488 kb on + strand, within IAI47_21280 at 512.488 kb on + strand, within IAI47_21280 at 512.488 kb on + strand, within IAI47_21280 at 512.489 kb on - strand, within IAI47_21280 at 512.489 kb on - strand, within IAI47_21280 at 512.489 kb on - strand, within IAI47_21280 at 512.489 kb on - strand, within IAI47_21280 at 512.492 kb on + strand, within IAI47_21280 at 512.493 kb on - strand, within IAI47_21280 at 512.493 kb on - strand, within IAI47_21280 at 512.545 kb on + strand, within IAI47_21280 at 512.549 kb on + strand, within IAI47_21280 at 512.550 kb on - strand, within IAI47_21280 at 512.550 kb on - strand, within IAI47_21280 at 512.550 kb on - strand, within IAI47_21280 at 512.550 kb on - strand, within IAI47_21280 at 512.593 kb on + strand, within IAI47_21280 at 512.594 kb on - strand, within IAI47_21280 at 512.594 kb on - strand, within IAI47_21280 at 512.594 kb on - strand, within IAI47_21280 at 512.618 kb on + strand, within IAI47_21280 at 512.627 kb on + strand, within IAI47_21280 at 512.638 kb on + strand, within IAI47_21280 at 512.639 kb on - strand, within IAI47_21280 at 512.753 kb on + strand at 512.753 kb on + strand at 512.754 kb on - strand at 512.754 kb on - strand at 512.754 kb on - strand at 512.754 kb on - strand at 512.754 kb on - strand at 512.766 kb on + strand at 512.766 kb on + strand at 512.766 kb on + strand at 512.766 kb on + strand at 512.766 kb on + strand at 512.766 kb on + strand at 512.767 kb on - strand at 512.767 kb on - strand at 512.774 kb on - strand at 512.776 kb on + strand at 512.777 kb on - strand at 512.789 kb on - strand at 512.825 kb on + strand at 512.858 kb on + strand at 512.858 kb on + strand at 512.858 kb on + strand at 512.859 kb on - strand at 512.897 kb on + strand, within IAI47_21285 at 513.043 kb on - strand, within IAI47_21285 at 513.119 kb on + strand, within IAI47_21285 at 513.119 kb on + strand, within IAI47_21285 at 513.120 kb on - strand, within IAI47_21285 at 513.200 kb on + strand, within IAI47_21285 at 513.200 kb on + strand, within IAI47_21285 at 513.201 kb on - strand, within IAI47_21285 at 513.201 kb on - strand, within IAI47_21285 at 513.201 kb on - strand, within IAI47_21285 at 513.296 kb on + strand, within IAI47_21285 at 513.296 kb on + strand, within IAI47_21285 at 513.296 kb on + strand, within IAI47_21285 at 513.296 kb on + strand, within IAI47_21285 at 513.296 kb on + strand, within IAI47_21285 at 513.316 kb on - strand, within IAI47_21285 at 513.357 kb on + strand, within IAI47_21285 at 513.357 kb on + strand, within IAI47_21285 at 513.366 kb on + strand, within IAI47_21285 at 513.367 kb on - strand, within IAI47_21285 at 513.367 kb on - strand, within IAI47_21285 at 513.449 kb on + strand, within IAI47_21285 at 513.449 kb on + strand, within IAI47_21285 at 513.450 kb on - strand, within IAI47_21285 at 513.450 kb on - strand, within IAI47_21285 at 513.563 kb on + strand, within IAI47_21285 at 513.564 kb on - strand, within IAI47_21285 at 513.564 kb on - strand, within IAI47_21285 at 513.585 kb on + strand, within IAI47_21285 at 513.585 kb on + strand, within IAI47_21285 at 513.585 kb on + strand, within IAI47_21285 at 513.586 kb on - strand, within IAI47_21285 at 513.586 kb on - strand, within IAI47_21285 at 513.586 kb on - strand, within IAI47_21285 at 513.588 kb on + strand, within IAI47_21285 at 513.588 kb on + strand, within IAI47_21285 at 513.588 kb on + strand, within IAI47_21285 at 513.588 kb on + strand, within IAI47_21285 at 513.589 kb on - strand, within IAI47_21285 at 513.624 kb on - strand, within IAI47_21285 at 513.624 kb on - strand, within IAI47_21285 at 513.777 kb on + strand, within IAI47_21285 at 513.778 kb on - strand, within IAI47_21285 at 513.814 kb on + strand, within IAI47_21285 at 513.815 kb on - strand, within IAI47_21285 at 513.845 kb on + strand at 513.845 kb on + strand at 513.845 kb on + strand at 513.855 kb on + strand at 513.856 kb on - strand at 513.873 kb on + strand at 513.876 kb on - strand at 513.894 kb on + strand at 513.894 kb on + strand at 513.895 kb on - strand at 513.914 kb on + strand at 513.977 kb on + strand at 513.977 kb on + strand at 514.046 kb on + strand at 514.046 kb on + strand at 514.122 kb on + strand at 514.146 kb on + strand at 514.146 kb on + strand at 514.146 kb on + strand at 514.147 kb on - strand at 514.166 kb on + strand at 514.167 kb on - strand at 514.169 kb on + strand at 514.170 kb on - strand at 514.170 kb on - strand at 514.172 kb on + strand at 514.188 kb on - strand at 514.188 kb on - strand at 514.200 kb on + strand at 514.292 kb on + strand, within IAI47_21290 at 514.347 kb on + strand, within IAI47_21290 at 514.366 kb on - strand, within IAI47_21290 at 514.366 kb on - strand, within IAI47_21290 at 514.371 kb on + strand, within IAI47_21290 at 514.372 kb on - strand, within IAI47_21290 at 514.425 kb on + strand, within IAI47_21290 at 514.529 kb on + strand, within IAI47_21290 at 514.529 kb on + strand, within IAI47_21290 at 514.529 kb on + strand, within IAI47_21290 at 514.529 kb on + strand, within IAI47_21290 at 514.530 kb on - strand, within IAI47_21290 at 514.530 kb on - strand, within IAI47_21290 at 514.575 kb on + strand, within IAI47_21290 at 514.575 kb on + strand, within IAI47_21290 at 514.576 kb on - strand, within IAI47_21290 at 514.581 kb on + strand, within IAI47_21290 at 514.599 kb on - strand, within IAI47_21290 at 514.681 kb on + strand at 514.682 kb on - strand at 514.693 kb on + strand at 514.693 kb on + strand at 514.694 kb on - strand at 514.700 kb on - strand at 514.734 kb on - strand at 514.734 kb on - strand at 514.776 kb on - strand at 514.822 kb on + strand at 514.822 kb on + strand at 514.822 kb on + strand at 514.823 kb on - strand at 514.823 kb on - strand at 514.831 kb on + strand at 514.831 kb on + strand at 514.831 kb on + strand at 514.832 kb on - strand at 514.832 kb on - strand at 514.838 kb on + strand at 514.838 kb on + strand at 514.839 kb on - strand at 514.839 kb on - strand at 514.869 kb on + strand at 514.913 kb on + strand, within IAI47_21295 at 514.913 kb on + strand, within IAI47_21295 at 514.913 kb on + strand, within IAI47_21295 at 514.914 kb on - strand, within IAI47_21295
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 2 remove 511,806 + IAI47_21275 0.87 -0.9 511,817 + IAI47_21275 0.89 -1.9 511,817 + IAI47_21275 0.89 -1.2 511,818 - IAI47_21275 0.89 -1.7 511,873 - -0.6 511,873 - -2.8 511,886 + -0.6 511,886 + -2.2 511,886 + -1.4 511,886 + -0.6 511,887 - -2.2 511,887 - +0.4 511,906 + +1.7 511,906 + +1.4 511,906 + +0.6 511,906 + -1.7 512,084 + IAI47_21280 0.21 +2.4 512,197 + IAI47_21280 0.34 +1.1 512,197 + IAI47_21280 0.34 -0.4 512,197 + IAI47_21280 0.34 -1.2 512,197 + IAI47_21280 0.34 +0.6 512,197 + IAI47_21280 0.34 +1.6 512,197 + IAI47_21280 0.34 +0.4 512,197 + IAI47_21280 0.34 -1.3 512,227 + IAI47_21280 0.38 -2.4 512,285 + IAI47_21280 0.45 -1.4 512,419 + IAI47_21280 0.61 -1.7 512,420 - IAI47_21280 0.61 +1.4 512,488 + IAI47_21280 0.69 -1.7 512,488 + IAI47_21280 0.69 +0.6 512,488 + IAI47_21280 0.69 +1.0 512,489 - IAI47_21280 0.69 -0.9 512,489 - IAI47_21280 0.69 +1.2 512,489 - IAI47_21280 0.69 +0.2 512,489 - IAI47_21280 0.69 -2.4 512,492 + IAI47_21280 0.69 -0.4 512,493 - IAI47_21280 0.69 -0.1 512,493 - IAI47_21280 0.69 -0.6 512,545 + IAI47_21280 0.75 -0.9 512,549 + IAI47_21280 0.76 +0.3 512,550 - IAI47_21280 0.76 -0.2 512,550 - IAI47_21280 0.76 -0.6 512,550 - IAI47_21280 0.76 +0.4 512,550 - IAI47_21280 0.76 -1.2 512,593 + IAI47_21280 0.81 -1.4 512,594 - IAI47_21280 0.81 +0.0 512,594 - IAI47_21280 0.81 -0.6 512,594 - IAI47_21280 0.81 +1.4 512,618 + IAI47_21280 0.84 -0.2 512,627 + IAI47_21280 0.85 +1.4 512,638 + IAI47_21280 0.86 +0.4 512,639 - IAI47_21280 0.86 +0.8 512,753 + +0.1 512,753 + +1.2 512,754 - -0.9 512,754 - +0.4 512,754 - -1.4 512,754 - +0.0 512,754 - +0.4 512,766 + +1.2 512,766 + -1.2 512,766 + +0.4 512,766 + -1.4 512,766 + -1.7 512,766 + -1.6 512,767 - +1.6 512,767 - -1.1 512,774 - -2.7 512,776 + -0.4 512,777 - +0.9 512,789 - +0.6 512,825 + +0.4 512,858 + -1.6 512,858 + -1.4 512,858 + -0.9 512,859 - -0.6 512,897 + IAI47_21285 0.10 +1.4 513,043 - IAI47_21285 0.23 +0.7 513,119 + IAI47_21285 0.29 +1.0 513,119 + IAI47_21285 0.29 -0.3 513,120 - IAI47_21285 0.29 -0.0 513,200 + IAI47_21285 0.36 +2.0 513,200 + IAI47_21285 0.36 +1.4 513,201 - IAI47_21285 0.36 +1.0 513,201 - IAI47_21285 0.36 -1.9 513,201 - IAI47_21285 0.36 +2.0 513,296 + IAI47_21285 0.44 +2.7 513,296 + IAI47_21285 0.44 +1.0 513,296 + IAI47_21285 0.44 -0.4 513,296 + IAI47_21285 0.44 +1.5 513,296 + IAI47_21285 0.44 -1.9 513,316 - IAI47_21285 0.46 -1.2 513,357 + IAI47_21285 0.49 -0.2 513,357 + IAI47_21285 0.49 -0.7 513,366 + IAI47_21285 0.50 -1.4 513,367 - IAI47_21285 0.50 -1.4 513,367 - IAI47_21285 0.50 -1.4 513,449 + IAI47_21285 0.57 -1.0 513,449 + IAI47_21285 0.57 +1.1 513,450 - IAI47_21285 0.57 -0.2 513,450 - IAI47_21285 0.57 +0.3 513,563 + IAI47_21285 0.66 -1.6 513,564 - IAI47_21285 0.66 +1.3 513,564 - IAI47_21285 0.66 +0.3 513,585 + IAI47_21285 0.68 -0.2 513,585 + IAI47_21285 0.68 +0.7 513,585 + IAI47_21285 0.68 +0.2 513,586 - IAI47_21285 0.68 +0.5 513,586 - IAI47_21285 0.68 +0.1 513,586 - IAI47_21285 0.68 -0.1 513,588 + IAI47_21285 0.68 +1.0 513,588 + IAI47_21285 0.68 +2.2 513,588 + IAI47_21285 0.68 +1.2 513,588 + IAI47_21285 0.68 -0.5 513,589 - IAI47_21285 0.69 -1.3 513,624 - IAI47_21285 0.71 -0.2 513,624 - IAI47_21285 0.71 -1.4 513,777 + IAI47_21285 0.84 -1.4 513,778 - IAI47_21285 0.84 -0.2 513,814 + IAI47_21285 0.87 +0.9 513,815 - IAI47_21285 0.88 -1.4 513,845 + +0.8 513,845 + +0.3 513,845 + -0.2 513,855 + +1.7 513,856 - +1.2 513,873 + -0.2 513,876 - +1.6 513,894 + +1.2 513,894 + +0.4 513,895 - -0.9 513,914 + +2.2 513,977 + +0.0 513,977 + -0.6 514,046 + -0.8 514,046 + -0.3 514,122 + +2.0 514,146 + +0.4 514,146 + +1.1 514,146 + -1.1 514,147 - -1.7 514,166 + -0.7 514,167 - -0.8 514,169 + +0.4 514,170 - -1.4 514,170 - -1.6 514,172 + -0.1 514,188 - +1.3 514,188 - -1.6 514,200 + +0.6 514,292 + IAI47_21290 0.19 +1.2 514,347 + IAI47_21290 0.30 +2.7 514,366 - IAI47_21290 0.34 +0.6 514,366 - IAI47_21290 0.34 +0.2 514,371 + IAI47_21290 0.35 -0.9 514,372 - IAI47_21290 0.35 +0.4 514,425 + IAI47_21290 0.46 -2.5 514,529 + IAI47_21290 0.68 +1.2 514,529 + IAI47_21290 0.68 -1.2 514,529 + IAI47_21290 0.68 -1.4 514,529 + IAI47_21290 0.68 +0.3 514,530 - IAI47_21290 0.68 -2.0 514,530 - IAI47_21290 0.68 +2.4 514,575 + IAI47_21290 0.78 -1.5 514,575 + IAI47_21290 0.78 +1.3 514,576 - IAI47_21290 0.78 -0.6 514,581 + IAI47_21290 0.79 +0.4 514,599 - IAI47_21290 0.83 +0.4 514,681 + -1.9 514,682 - +0.4 514,693 + -1.6 514,693 + -0.2 514,694 - +0.8 514,700 - -0.2 514,734 - -0.0 514,734 - -1.2 514,776 - -3.3 514,822 + -0.6 514,822 + +2.4 514,822 + -0.6 514,823 - -0.4 514,823 - +0.8 514,831 + +0.8 514,831 + +1.0 514,831 + -2.3 514,832 - -0.9 514,832 - -0.2 514,838 + +1.8 514,838 + +3.3 514,839 - +2.1 514,839 - +0.4 514,869 + +0.6 514,913 + IAI47_21295 0.12 +0.9 514,913 + IAI47_21295 0.12 -1.4 514,913 + IAI47_21295 0.12 +4.0 514,914 - IAI47_21295 0.12 +1.4
Or see this region's nucleotide sequence