Strain Fitness in Pantoea sp. MT58 around IAI47_21270

Experiment: Ying_sugar7 rep C; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_21260 and IAI47_21265 are separated by 112 nucleotidesIAI47_21265 and IAI47_21270 overlap by 4 nucleotidesIAI47_21270 and IAI47_21275 are separated by 9 nucleotidesIAI47_21275 and IAI47_21280 are separated by 6 nucleotides IAI47_21260: IAI47_21260 - glutathione S-transferase, at 508,902 to 509,564 _21260 IAI47_21265: IAI47_21265 - ATP-binding cassette domain-containing protein, at 509,677 to 510,480 _21265 IAI47_21270: IAI47_21270 - ABC transporter permease subunit, at 510,477 to 511,163 _21270 IAI47_21275: IAI47_21275 - ABC transporter permease subunit, at 511,173 to 511,898 _21275 IAI47_21280: IAI47_21280 - amino acid ABC transporter substrate-binding protein, at 511,905 to 512,753 _21280 Position (kb) 510 511 512Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 509.484 kb on + strand, within IAI47_21260at 509.511 kb on + strandat 509.511 kb on + strandat 509.512 kb on - strandat 509.562 kb on + strandat 509.563 kb on - strandat 509.573 kb on + strandat 509.574 kb on - strandat 509.581 kb on + strandat 509.581 kb on + strandat 509.582 kb on - strandat 509.582 kb on - strandat 509.582 kb on - strandat 509.651 kb on + strandat 509.712 kb on + strandat 509.712 kb on + strandat 509.869 kb on - strand, within IAI47_21265at 509.877 kb on + strand, within IAI47_21265at 509.877 kb on + strand, within IAI47_21265at 509.877 kb on + strand, within IAI47_21265at 509.877 kb on + strand, within IAI47_21265at 509.877 kb on + strand, within IAI47_21265at 509.877 kb on + strand, within IAI47_21265at 509.877 kb on + strand, within IAI47_21265at 509.877 kb on + strand, within IAI47_21265at 509.878 kb on - strand, within IAI47_21265at 509.878 kb on - strand, within IAI47_21265at 509.878 kb on - strand, within IAI47_21265at 509.878 kb on - strand, within IAI47_21265at 509.878 kb on - strand, within IAI47_21265at 509.898 kb on + strand, within IAI47_21265at 509.898 kb on + strand, within IAI47_21265at 509.899 kb on - strand, within IAI47_21265at 509.899 kb on - strand, within IAI47_21265at 509.899 kb on - strand, within IAI47_21265at 509.902 kb on + strand, within IAI47_21265at 509.902 kb on + strand, within IAI47_21265at 509.903 kb on - strand, within IAI47_21265at 509.903 kb on - strand, within IAI47_21265at 509.903 kb on - strand, within IAI47_21265at 509.903 kb on - strand, within IAI47_21265at 509.903 kb on - strand, within IAI47_21265at 509.903 kb on - strand, within IAI47_21265at 509.903 kb on - strand, within IAI47_21265at 509.903 kb on - strand, within IAI47_21265at 509.903 kb on - strand, within IAI47_21265at 509.911 kb on + strand, within IAI47_21265at 509.912 kb on - strand, within IAI47_21265at 509.914 kb on + strand, within IAI47_21265at 509.914 kb on + strand, within IAI47_21265at 509.915 kb on - strand, within IAI47_21265at 509.915 kb on - strand, within IAI47_21265at 509.915 kb on - strand, within IAI47_21265at 509.915 kb on - strand, within IAI47_21265at 510.028 kb on + strand, within IAI47_21265at 510.059 kb on + strand, within IAI47_21265at 510.059 kb on + strand, within IAI47_21265at 510.073 kb on - strand, within IAI47_21265at 510.108 kb on + strand, within IAI47_21265at 510.109 kb on - strand, within IAI47_21265at 510.265 kb on - strand, within IAI47_21265at 510.279 kb on + strand, within IAI47_21265at 510.280 kb on - strand, within IAI47_21265at 510.331 kb on - strand, within IAI47_21265at 510.345 kb on + strand, within IAI47_21265at 510.345 kb on + strand, within IAI47_21265at 510.346 kb on - strand, within IAI47_21265at 510.346 kb on - strand, within IAI47_21265at 510.437 kb on + strandat 510.437 kb on + strandat 510.438 kb on - strandat 510.438 kb on - strandat 510.468 kb on + strandat 510.468 kb on + strandat 510.468 kb on + strandat 510.468 kb on + strandat 510.468 kb on + strandat 510.469 kb on - strandat 510.469 kb on - strandat 510.496 kb on + strandat 510.496 kb on + strandat 510.497 kb on - strandat 510.497 kb on - strandat 510.499 kb on + strandat 510.499 kb on + strandat 510.499 kb on + strandat 510.499 kb on + strandat 510.500 kb on - strandat 510.507 kb on + strandat 510.536 kb on + strandat 510.536 kb on + strandat 510.548 kb on + strand, within IAI47_21270at 510.548 kb on + strand, within IAI47_21270at 510.548 kb on + strand, within IAI47_21270at 510.548 kb on + strand, within IAI47_21270at 510.548 kb on + strand, within IAI47_21270at 510.549 kb on - strand, within IAI47_21270at 510.549 kb on - strand, within IAI47_21270at 510.549 kb on - strand, within IAI47_21270at 510.549 kb on - strand, within IAI47_21270at 510.549 kb on - strand, within IAI47_21270at 510.556 kb on - strand, within IAI47_21270at 510.562 kb on + strand, within IAI47_21270at 510.586 kb on - strand, within IAI47_21270at 510.586 kb on - strand, within IAI47_21270at 510.703 kb on + strand, within IAI47_21270at 510.704 kb on - strand, within IAI47_21270at 510.712 kb on - strand, within IAI47_21270at 510.761 kb on - strand, within IAI47_21270at 510.844 kb on + strand, within IAI47_21270at 510.844 kb on + strand, within IAI47_21270at 510.844 kb on + strand, within IAI47_21270at 510.845 kb on - strand, within IAI47_21270at 510.845 kb on - strand, within IAI47_21270at 510.857 kb on + strand, within IAI47_21270at 510.887 kb on - strand, within IAI47_21270at 510.897 kb on + strand, within IAI47_21270at 510.897 kb on + strand, within IAI47_21270at 510.897 kb on + strand, within IAI47_21270at 510.897 kb on + strand, within IAI47_21270at 510.897 kb on + strand, within IAI47_21270at 510.898 kb on - strand, within IAI47_21270at 510.898 kb on - strand, within IAI47_21270at 510.918 kb on - strand, within IAI47_21270at 510.918 kb on - strand, within IAI47_21270at 510.918 kb on - strand, within IAI47_21270at 510.952 kb on + strand, within IAI47_21270at 510.952 kb on + strand, within IAI47_21270at 510.952 kb on + strand, within IAI47_21270at 510.953 kb on - strand, within IAI47_21270at 510.959 kb on + strand, within IAI47_21270at 510.959 kb on + strand, within IAI47_21270at 510.984 kb on - strand, within IAI47_21270at 511.004 kb on - strand, within IAI47_21270at 511.049 kb on + strand, within IAI47_21270at 511.049 kb on + strand, within IAI47_21270at 511.100 kb on + strandat 511.100 kb on + strandat 511.100 kb on + strandat 511.100 kb on + strandat 511.101 kb on - strandat 511.146 kb on + strandat 511.146 kb on + strandat 511.146 kb on + strandat 511.147 kb on - strandat 511.174 kb on + strandat 511.175 kb on - strandat 511.250 kb on + strand, within IAI47_21275at 511.258 kb on + strand, within IAI47_21275at 511.259 kb on - strand, within IAI47_21275at 511.259 kb on - strand, within IAI47_21275at 511.279 kb on + strand, within IAI47_21275at 511.280 kb on - strand, within IAI47_21275at 511.280 kb on - strand, within IAI47_21275at 511.376 kb on + strand, within IAI47_21275at 511.436 kb on + strand, within IAI47_21275at 511.436 kb on + strand, within IAI47_21275at 511.436 kb on + strand, within IAI47_21275at 511.437 kb on - strand, within IAI47_21275at 511.437 kb on - strand, within IAI47_21275at 511.437 kb on - strand, within IAI47_21275at 511.510 kb on + strand, within IAI47_21275at 511.511 kb on - strand, within IAI47_21275at 511.541 kb on - strand, within IAI47_21275at 511.563 kb on - strand, within IAI47_21275at 511.657 kb on + strand, within IAI47_21275at 511.666 kb on + strand, within IAI47_21275at 511.667 kb on - strand, within IAI47_21275at 511.708 kb on + strand, within IAI47_21275at 511.709 kb on - strand, within IAI47_21275at 511.709 kb on - strand, within IAI47_21275at 511.765 kb on - strand, within IAI47_21275at 511.806 kb on + strand, within IAI47_21275at 511.817 kb on + strand, within IAI47_21275at 511.817 kb on + strand, within IAI47_21275at 511.818 kb on - strand, within IAI47_21275at 511.873 kb on - strandat 511.873 kb on - strandat 511.886 kb on + strandat 511.886 kb on + strandat 511.886 kb on + strandat 511.886 kb on + strandat 511.887 kb on - strandat 511.887 kb on - strandat 511.906 kb on + strandat 511.906 kb on + strandat 511.906 kb on + strandat 511.906 kb on + strandat 512.084 kb on + strand, within IAI47_21280

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 2
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509,484 + IAI47_21260 0.88 +1.4
509,511 + -0.2
509,511 + -0.1
509,512 - +0.8
509,562 + +1.4
509,563 - -1.0
509,573 + +1.8
509,574 - -2.9
509,581 + -1.1
509,581 + -0.2
509,582 - +0.7
509,582 - -1.0
509,582 - -2.6
509,651 + -1.7
509,712 + +0.5
509,712 + +0.3
509,869 - IAI47_21265 0.24 +1.6
509,877 + IAI47_21265 0.25 -0.7
509,877 + IAI47_21265 0.25 +0.0
509,877 + IAI47_21265 0.25 +1.2
509,877 + IAI47_21265 0.25 -1.2
509,877 + IAI47_21265 0.25 -1.6
509,877 + IAI47_21265 0.25 +0.4
509,877 + IAI47_21265 0.25 -0.9
509,877 + IAI47_21265 0.25 +1.0
509,878 - IAI47_21265 0.25 +0.4
509,878 - IAI47_21265 0.25 -0.6
509,878 - IAI47_21265 0.25 -1.7
509,878 - IAI47_21265 0.25 -0.7
509,878 - IAI47_21265 0.25 -0.7
509,898 + IAI47_21265 0.27 -0.2
509,898 + IAI47_21265 0.27 +1.2
509,899 - IAI47_21265 0.28 -1.2
509,899 - IAI47_21265 0.28 +0.0
509,899 - IAI47_21265 0.28 -0.1
509,902 + IAI47_21265 0.28 -1.7
509,902 + IAI47_21265 0.28 +0.1
509,903 - IAI47_21265 0.28 +0.7
509,903 - IAI47_21265 0.28 +0.6
509,903 - IAI47_21265 0.28 +1.4
509,903 - IAI47_21265 0.28 -1.2
509,903 - IAI47_21265 0.28 +2.2
509,903 - IAI47_21265 0.28 +1.6
509,903 - IAI47_21265 0.28 +0.2
509,903 - IAI47_21265 0.28 +0.9
509,903 - IAI47_21265 0.28 +0.5
509,911 + IAI47_21265 0.29 -2.9
509,912 - IAI47_21265 0.29 +0.2
509,914 + IAI47_21265 0.29 -2.3
509,914 + IAI47_21265 0.29 -1.3
509,915 - IAI47_21265 0.30 -1.7
509,915 - IAI47_21265 0.30 -0.2
509,915 - IAI47_21265 0.30 -2.6
509,915 - IAI47_21265 0.30 -2.6
510,028 + IAI47_21265 0.44 -0.5
510,059 + IAI47_21265 0.48 +0.2
510,059 + IAI47_21265 0.48 +1.7
510,073 - IAI47_21265 0.49 -0.2
510,108 + IAI47_21265 0.54 +0.4
510,109 - IAI47_21265 0.54 -0.4
510,265 - IAI47_21265 0.73 -2.0
510,279 + IAI47_21265 0.75 +2.6
510,280 - IAI47_21265 0.75 +1.4
510,331 - IAI47_21265 0.81 -0.7
510,345 + IAI47_21265 0.83 -0.8
510,345 + IAI47_21265 0.83 +0.3
510,346 - IAI47_21265 0.83 +1.9
510,346 - IAI47_21265 0.83 -0.2
510,437 + -1.0
510,437 + -0.0
510,438 - -0.9
510,438 - -0.2
510,468 + -1.2
510,468 + -1.2
510,468 + +0.8
510,468 + -0.2
510,468 + -0.1
510,469 - -2.4
510,469 - +1.7
510,496 + +2.4
510,496 + +1.8
510,497 - -0.9
510,497 - -0.7
510,499 + +0.6
510,499 + -1.7
510,499 + -0.6
510,499 + -2.4
510,500 - +1.7
510,507 + -1.2
510,536 + -1.9
510,536 + +2.1
510,548 + IAI47_21270 0.10 -0.6
510,548 + IAI47_21270 0.10 +1.0
510,548 + IAI47_21270 0.10 -0.5
510,548 + IAI47_21270 0.10 -1.2
510,548 + IAI47_21270 0.10 +1.0
510,549 - IAI47_21270 0.10 +0.1
510,549 - IAI47_21270 0.10 -1.6
510,549 - IAI47_21270 0.10 -1.0
510,549 - IAI47_21270 0.10 -1.7
510,549 - IAI47_21270 0.10 +0.7
510,556 - IAI47_21270 0.11 -0.9
510,562 + IAI47_21270 0.12 +2.0
510,586 - IAI47_21270 0.16 +0.0
510,586 - IAI47_21270 0.16 -1.2
510,703 + IAI47_21270 0.33 -2.3
510,704 - IAI47_21270 0.33 -1.7
510,712 - IAI47_21270 0.34 +0.3
510,761 - IAI47_21270 0.41 +0.8
510,844 + IAI47_21270 0.53 +0.4
510,844 + IAI47_21270 0.53 -1.0
510,844 + IAI47_21270 0.53 -2.2
510,845 - IAI47_21270 0.54 -2.0
510,845 - IAI47_21270 0.54 -2.5
510,857 + IAI47_21270 0.55 -0.6
510,887 - IAI47_21270 0.60 +0.1
510,897 + IAI47_21270 0.61 +1.0
510,897 + IAI47_21270 0.61 -0.6
510,897 + IAI47_21270 0.61 -0.6
510,897 + IAI47_21270 0.61 -1.4
510,897 + IAI47_21270 0.61 +0.8
510,898 - IAI47_21270 0.61 +0.3
510,898 - IAI47_21270 0.61 +0.6
510,918 - IAI47_21270 0.64 -2.2
510,918 - IAI47_21270 0.64 +1.0
510,918 - IAI47_21270 0.64 +3.1
510,952 + IAI47_21270 0.69 +0.0
510,952 + IAI47_21270 0.69 +1.4
510,952 + IAI47_21270 0.69 -0.6
510,953 - IAI47_21270 0.69 -0.4
510,959 + IAI47_21270 0.70 +1.0
510,959 + IAI47_21270 0.70 +0.3
510,984 - IAI47_21270 0.74 +3.3
511,004 - IAI47_21270 0.77 +1.7
511,049 + IAI47_21270 0.83 +0.7
511,049 + IAI47_21270 0.83 -0.2
511,100 + +0.1
511,100 + -1.6
511,100 + +1.4
511,100 + +2.3
511,101 - -1.4
511,146 + -0.3
511,146 + +2.2
511,146 + -0.6
511,147 - +1.6
511,174 + -0.2
511,175 - +1.0
511,250 + IAI47_21275 0.11 -1.0
511,258 + IAI47_21275 0.12 -0.2
511,259 - IAI47_21275 0.12 -1.2
511,259 - IAI47_21275 0.12 -0.9
511,279 + IAI47_21275 0.15 -0.4
511,280 - IAI47_21275 0.15 -2.3
511,280 - IAI47_21275 0.15 -1.9
511,376 + IAI47_21275 0.28 -0.2
511,436 + IAI47_21275 0.36 -2.5
511,436 + IAI47_21275 0.36 +1.0
511,436 + IAI47_21275 0.36 +3.0
511,437 - IAI47_21275 0.36 +0.8
511,437 - IAI47_21275 0.36 +1.7
511,437 - IAI47_21275 0.36 -1.7
511,510 + IAI47_21275 0.46 +0.9
511,511 - IAI47_21275 0.47 -0.9
511,541 - IAI47_21275 0.51 +0.3
511,563 - IAI47_21275 0.54 -0.2
511,657 + IAI47_21275 0.67 -2.2
511,666 + IAI47_21275 0.68 +0.5
511,667 - IAI47_21275 0.68 -1.2
511,708 + IAI47_21275 0.74 -0.3
511,709 - IAI47_21275 0.74 -1.6
511,709 - IAI47_21275 0.74 -1.2
511,765 - IAI47_21275 0.82 +1.6
511,806 + IAI47_21275 0.87 -0.9
511,817 + IAI47_21275 0.89 -1.9
511,817 + IAI47_21275 0.89 -1.2
511,818 - IAI47_21275 0.89 -1.7
511,873 - -0.6
511,873 - -2.8
511,886 + -0.6
511,886 + -2.2
511,886 + -1.4
511,886 + -0.6
511,887 - -2.2
511,887 - +0.4
511,906 + +1.7
511,906 + +1.4
511,906 + +0.6
511,906 + -1.7
512,084 + IAI47_21280 0.21 +2.4

Or see this region's nucleotide sequence