Experiment: Ying_sugar7 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_20805 and IAI47_20810 are separated by 15 nucleotides IAI47_20810 and IAI47_20815 are separated by 3 nucleotides IAI47_20815 and IAI47_20820 are separated by 21 nucleotides
IAI47_20805: IAI47_20805 - ornithine cyclodeaminase family protein, at 406,467 to 407,438
_20805
IAI47_20810: IAI47_20810 - carboxymuconolactone decarboxylase family protein, at 407,454 to 407,999
_20810
IAI47_20815: IAI47_20815 - bacilysin biosynthesis protein BacA, at 408,003 to 408,590
_20815
IAI47_20820: IAI47_20820 - branched-chain amino acid transaminase, at 408,612 to 409,583
_20820
Position (kb) 407
408 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 406.469 kb on - strand at 406.478 kb on + strand at 406.479 kb on - strand at 406.556 kb on + strand at 406.557 kb on - strand at 406.557 kb on - strand at 406.617 kb on + strand, within IAI47_20805 at 406.617 kb on + strand, within IAI47_20805 at 406.617 kb on + strand, within IAI47_20805 at 406.618 kb on - strand, within IAI47_20805 at 406.618 kb on - strand, within IAI47_20805 at 406.618 kb on - strand, within IAI47_20805 at 406.644 kb on + strand, within IAI47_20805 at 406.644 kb on + strand, within IAI47_20805 at 406.647 kb on + strand, within IAI47_20805 at 406.647 kb on + strand, within IAI47_20805 at 406.648 kb on - strand, within IAI47_20805 at 406.648 kb on - strand, within IAI47_20805 at 406.668 kb on - strand, within IAI47_20805 at 406.668 kb on - strand, within IAI47_20805 at 406.668 kb on - strand, within IAI47_20805 at 406.671 kb on + strand, within IAI47_20805 at 406.672 kb on - strand, within IAI47_20805 at 406.715 kb on - strand, within IAI47_20805 at 406.732 kb on + strand, within IAI47_20805 at 406.732 kb on + strand, within IAI47_20805 at 406.732 kb on + strand, within IAI47_20805 at 406.732 kb on + strand, within IAI47_20805 at 406.733 kb on - strand, within IAI47_20805 at 406.736 kb on + strand, within IAI47_20805 at 406.736 kb on + strand, within IAI47_20805 at 406.737 kb on - strand, within IAI47_20805 at 406.737 kb on - strand, within IAI47_20805 at 406.737 kb on - strand, within IAI47_20805 at 406.787 kb on + strand, within IAI47_20805 at 406.787 kb on + strand, within IAI47_20805 at 406.788 kb on - strand, within IAI47_20805 at 406.788 kb on - strand, within IAI47_20805 at 406.847 kb on + strand, within IAI47_20805 at 406.915 kb on + strand, within IAI47_20805 at 406.915 kb on + strand, within IAI47_20805 at 406.915 kb on + strand, within IAI47_20805 at 406.916 kb on - strand, within IAI47_20805 at 406.976 kb on + strand, within IAI47_20805 at 406.976 kb on + strand, within IAI47_20805 at 406.976 kb on + strand, within IAI47_20805 at 406.976 kb on + strand, within IAI47_20805 at 406.976 kb on + strand, within IAI47_20805 at 406.976 kb on + strand, within IAI47_20805 at 406.977 kb on - strand, within IAI47_20805 at 406.977 kb on - strand, within IAI47_20805 at 406.977 kb on - strand, within IAI47_20805 at 406.978 kb on + strand, within IAI47_20805 at 406.978 kb on + strand, within IAI47_20805 at 406.978 kb on + strand, within IAI47_20805 at 406.978 kb on + strand, within IAI47_20805 at 406.978 kb on + strand, within IAI47_20805 at 406.978 kb on + strand, within IAI47_20805 at 406.979 kb on - strand, within IAI47_20805 at 406.979 kb on - strand, within IAI47_20805 at 406.979 kb on - strand, within IAI47_20805 at 406.979 kb on - strand, within IAI47_20805 at 406.979 kb on - strand, within IAI47_20805 at 406.979 kb on - strand, within IAI47_20805 at 406.979 kb on - strand, within IAI47_20805 at 406.979 kb on - strand, within IAI47_20805 at 406.979 kb on - strand, within IAI47_20805 at 406.979 kb on - strand, within IAI47_20805 at 407.112 kb on + strand, within IAI47_20805 at 407.112 kb on + strand, within IAI47_20805 at 407.112 kb on + strand, within IAI47_20805 at 407.112 kb on + strand, within IAI47_20805 at 407.113 kb on - strand, within IAI47_20805 at 407.170 kb on + strand, within IAI47_20805 at 407.170 kb on + strand, within IAI47_20805 at 407.181 kb on - strand, within IAI47_20805 at 407.181 kb on - strand, within IAI47_20805 at 407.181 kb on - strand, within IAI47_20805 at 407.181 kb on - strand, within IAI47_20805 at 407.181 kb on - strand, within IAI47_20805 at 407.198 kb on + strand, within IAI47_20805 at 407.198 kb on + strand, within IAI47_20805 at 407.199 kb on - strand, within IAI47_20805 at 407.199 kb on - strand, within IAI47_20805 at 407.272 kb on + strand, within IAI47_20805 at 407.272 kb on + strand, within IAI47_20805 at 407.273 kb on - strand, within IAI47_20805 at 407.336 kb on + strand, within IAI47_20805 at 407.400 kb on + strand at 407.400 kb on + strand at 407.429 kb on + strand at 407.429 kb on + strand at 407.430 kb on - strand at 407.455 kb on + strand at 407.510 kb on + strand, within IAI47_20810 at 407.510 kb on + strand, within IAI47_20810 at 407.510 kb on + strand, within IAI47_20810 at 407.510 kb on + strand, within IAI47_20810 at 407.511 kb on - strand, within IAI47_20810 at 407.511 kb on - strand, within IAI47_20810 at 407.575 kb on + strand, within IAI47_20810 at 407.575 kb on + strand, within IAI47_20810 at 407.576 kb on - strand, within IAI47_20810 at 407.613 kb on + strand, within IAI47_20810 at 407.653 kb on + strand, within IAI47_20810 at 407.653 kb on + strand, within IAI47_20810 at 407.653 kb on + strand, within IAI47_20810 at 407.653 kb on + strand, within IAI47_20810 at 407.653 kb on + strand, within IAI47_20810 at 407.654 kb on - strand, within IAI47_20810 at 407.654 kb on - strand, within IAI47_20810 at 407.654 kb on - strand, within IAI47_20810 at 407.654 kb on - strand, within IAI47_20810 at 407.654 kb on - strand, within IAI47_20810 at 407.655 kb on + strand, within IAI47_20810 at 407.656 kb on - strand, within IAI47_20810 at 407.656 kb on - strand, within IAI47_20810 at 407.729 kb on + strand, within IAI47_20810 at 407.730 kb on - strand, within IAI47_20810 at 407.730 kb on - strand, within IAI47_20810 at 407.747 kb on + strand, within IAI47_20810 at 407.748 kb on - strand, within IAI47_20810 at 407.748 kb on - strand, within IAI47_20810 at 407.748 kb on - strand, within IAI47_20810 at 407.748 kb on - strand, within IAI47_20810 at 407.763 kb on - strand, within IAI47_20810 at 407.764 kb on + strand, within IAI47_20810 at 407.764 kb on + strand, within IAI47_20810 at 407.861 kb on - strand, within IAI47_20810 at 407.861 kb on - strand, within IAI47_20810 at 407.988 kb on - strand at 408.044 kb on + strand at 408.044 kb on + strand at 408.044 kb on + strand at 408.044 kb on + strand at 408.044 kb on + strand at 408.044 kb on + strand at 408.044 kb on + strand at 408.044 kb on + strand at 408.044 kb on + strand at 408.044 kb on + strand at 408.044 kb on + strand at 408.044 kb on + strand at 408.045 kb on - strand at 408.045 kb on - strand at 408.045 kb on - strand at 408.045 kb on - strand at 408.045 kb on - strand at 408.045 kb on - strand at 408.045 kb on - strand at 408.045 kb on - strand at 408.045 kb on - strand at 408.045 kb on - strand at 408.045 kb on - strand at 408.045 kb on - strand at 408.045 kb on - strand at 408.045 kb on - strand at 408.048 kb on + strand at 408.049 kb on - strand at 408.049 kb on - strand at 408.049 kb on - strand at 408.075 kb on - strand, within IAI47_20815 at 408.116 kb on + strand, within IAI47_20815 at 408.158 kb on + strand, within IAI47_20815 at 408.158 kb on + strand, within IAI47_20815 at 408.159 kb on - strand, within IAI47_20815 at 408.185 kb on + strand, within IAI47_20815 at 408.185 kb on + strand, within IAI47_20815 at 408.185 kb on + strand, within IAI47_20815 at 408.185 kb on + strand, within IAI47_20815 at 408.185 kb on + strand, within IAI47_20815 at 408.186 kb on - strand, within IAI47_20815 at 408.186 kb on - strand, within IAI47_20815 at 408.186 kb on - strand, within IAI47_20815 at 408.186 kb on - strand, within IAI47_20815 at 408.186 kb on - strand, within IAI47_20815 at 408.190 kb on - strand, within IAI47_20815 at 408.190 kb on - strand, within IAI47_20815 at 408.275 kb on + strand, within IAI47_20815 at 408.276 kb on - strand, within IAI47_20815 at 408.304 kb on + strand, within IAI47_20815 at 408.305 kb on - strand, within IAI47_20815 at 408.318 kb on + strand, within IAI47_20815 at 408.343 kb on + strand, within IAI47_20815 at 408.343 kb on + strand, within IAI47_20815 at 408.343 kb on + strand, within IAI47_20815 at 408.364 kb on + strand, within IAI47_20815 at 408.381 kb on + strand, within IAI47_20815 at 408.381 kb on + strand, within IAI47_20815 at 408.382 kb on - strand, within IAI47_20815 at 408.385 kb on - strand, within IAI47_20815 at 408.404 kb on + strand, within IAI47_20815 at 408.424 kb on + strand, within IAI47_20815 at 408.424 kb on + strand, within IAI47_20815 at 408.425 kb on - strand, within IAI47_20815 at 408.446 kb on + strand, within IAI47_20815 at 408.463 kb on + strand, within IAI47_20815 at 408.463 kb on + strand, within IAI47_20815 at 408.463 kb on + strand, within IAI47_20815 at 408.463 kb on + strand, within IAI47_20815 at 408.463 kb on + strand, within IAI47_20815 at 408.463 kb on + strand, within IAI47_20815 at 408.502 kb on + strand, within IAI47_20815 at 408.528 kb on + strand, within IAI47_20815 at 408.528 kb on + strand, within IAI47_20815 at 408.528 kb on + strand, within IAI47_20815 at 408.529 kb on - strand, within IAI47_20815 at 408.533 kb on + strand at 408.533 kb on + strand at 408.534 kb on - strand at 408.534 kb on - strand at 408.534 kb on - strand at 408.545 kb on - strand at 408.638 kb on + strand at 408.638 kb on + strand at 408.649 kb on - strand at 408.649 kb on - strand at 408.716 kb on + strand, within IAI47_20820 at 408.716 kb on + strand, within IAI47_20820 at 408.717 kb on - strand, within IAI47_20820 at 408.717 kb on - strand, within IAI47_20820 at 408.754 kb on - strand, within IAI47_20820 at 408.813 kb on + strand, within IAI47_20820 at 408.813 kb on + strand, within IAI47_20820 at 408.814 kb on - strand, within IAI47_20820 at 408.814 kb on - strand, within IAI47_20820 at 408.814 kb on - strand, within IAI47_20820 at 408.851 kb on + strand, within IAI47_20820 at 408.881 kb on + strand, within IAI47_20820 at 408.881 kb on + strand, within IAI47_20820 at 408.882 kb on - strand, within IAI47_20820 at 408.894 kb on - strand, within IAI47_20820 at 408.894 kb on - strand, within IAI47_20820 at 408.914 kb on + strand, within IAI47_20820 at 408.914 kb on + strand, within IAI47_20820 at 408.915 kb on - strand, within IAI47_20820 at 408.970 kb on + strand, within IAI47_20820 at 408.971 kb on - strand, within IAI47_20820 at 408.971 kb on - strand, within IAI47_20820 at 408.990 kb on + strand, within IAI47_20820 at 408.990 kb on + strand, within IAI47_20820
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 2 remove 406,469 - +0.1 406,478 + +0.8 406,479 - -0.6 406,556 + +1.2 406,557 - -0.3 406,557 - +0.2 406,617 + IAI47_20805 0.15 -1.2 406,617 + IAI47_20805 0.15 +1.4 406,617 + IAI47_20805 0.15 +1.6 406,618 - IAI47_20805 0.16 +1.4 406,618 - IAI47_20805 0.16 +0.4 406,618 - IAI47_20805 0.16 -2.7 406,644 + IAI47_20805 0.18 -0.2 406,644 + IAI47_20805 0.18 -2.5 406,647 + IAI47_20805 0.19 +0.7 406,647 + IAI47_20805 0.19 -0.8 406,648 - IAI47_20805 0.19 +0.7 406,648 - IAI47_20805 0.19 -0.6 406,668 - IAI47_20805 0.21 +0.4 406,668 - IAI47_20805 0.21 +1.4 406,668 - IAI47_20805 0.21 +0.1 406,671 + IAI47_20805 0.21 -1.4 406,672 - IAI47_20805 0.21 -0.3 406,715 - IAI47_20805 0.26 +0.4 406,732 + IAI47_20805 0.27 +1.0 406,732 + IAI47_20805 0.27 -2.3 406,732 + IAI47_20805 0.27 +0.4 406,732 + IAI47_20805 0.27 -1.6 406,733 - IAI47_20805 0.27 -1.6 406,736 + IAI47_20805 0.28 +0.8 406,736 + IAI47_20805 0.28 -2.2 406,737 - IAI47_20805 0.28 -1.2 406,737 - IAI47_20805 0.28 +1.4 406,737 - IAI47_20805 0.28 -0.4 406,787 + IAI47_20805 0.33 +1.6 406,787 + IAI47_20805 0.33 +1.4 406,788 - IAI47_20805 0.33 -0.2 406,788 - IAI47_20805 0.33 -0.9 406,847 + IAI47_20805 0.39 -0.2 406,915 + IAI47_20805 0.46 -1.9 406,915 + IAI47_20805 0.46 -2.2 406,915 + IAI47_20805 0.46 -3.1 406,916 - IAI47_20805 0.46 -1.4 406,976 + IAI47_20805 0.52 +1.0 406,976 + IAI47_20805 0.52 -0.3 406,976 + IAI47_20805 0.52 +0.2 406,976 + IAI47_20805 0.52 -1.6 406,976 + IAI47_20805 0.52 +0.3 406,976 + IAI47_20805 0.52 -0.2 406,977 - IAI47_20805 0.52 +1.4 406,977 - IAI47_20805 0.52 -0.5 406,977 - IAI47_20805 0.52 +1.7 406,978 + IAI47_20805 0.53 +0.6 406,978 + IAI47_20805 0.53 +0.4 406,978 + IAI47_20805 0.53 -2.4 406,978 + IAI47_20805 0.53 +0.3 406,978 + IAI47_20805 0.53 -1.4 406,978 + IAI47_20805 0.53 -2.3 406,979 - IAI47_20805 0.53 +0.1 406,979 - IAI47_20805 0.53 -3.1 406,979 - IAI47_20805 0.53 -1.4 406,979 - IAI47_20805 0.53 -0.1 406,979 - IAI47_20805 0.53 -2.2 406,979 - IAI47_20805 0.53 -0.4 406,979 - IAI47_20805 0.53 -0.6 406,979 - IAI47_20805 0.53 -0.6 406,979 - IAI47_20805 0.53 -1.2 406,979 - IAI47_20805 0.53 -0.9 407,112 + IAI47_20805 0.66 -0.3 407,112 + IAI47_20805 0.66 -0.6 407,112 + IAI47_20805 0.66 -0.9 407,112 + IAI47_20805 0.66 -0.2 407,113 - IAI47_20805 0.66 +2.4 407,170 + IAI47_20805 0.72 -2.3 407,170 + IAI47_20805 0.72 -2.8 407,181 - IAI47_20805 0.73 -0.2 407,181 - IAI47_20805 0.73 -1.8 407,181 - IAI47_20805 0.73 +1.1 407,181 - IAI47_20805 0.73 +0.2 407,181 - IAI47_20805 0.73 +1.2 407,198 + IAI47_20805 0.75 +0.3 407,198 + IAI47_20805 0.75 -0.3 407,199 - IAI47_20805 0.75 -0.3 407,199 - IAI47_20805 0.75 +0.2 407,272 + IAI47_20805 0.83 -1.4 407,272 + IAI47_20805 0.83 -0.5 407,273 - IAI47_20805 0.83 -1.7 407,336 + IAI47_20805 0.89 -0.9 407,400 + +0.4 407,400 + -1.6 407,429 + -2.3 407,429 + +0.4 407,430 - -0.6 407,455 + +3.4 407,510 + IAI47_20810 0.10 -1.6 407,510 + IAI47_20810 0.10 +0.1 407,510 + IAI47_20810 0.10 -0.9 407,510 + IAI47_20810 0.10 +1.3 407,511 - IAI47_20810 0.10 -0.2 407,511 - IAI47_20810 0.10 -0.6 407,575 + IAI47_20810 0.22 -1.2 407,575 + IAI47_20810 0.22 +0.2 407,576 - IAI47_20810 0.22 +0.8 407,613 + IAI47_20810 0.29 +1.3 407,653 + IAI47_20810 0.36 +0.1 407,653 + IAI47_20810 0.36 -3.5 407,653 + IAI47_20810 0.36 -0.6 407,653 + IAI47_20810 0.36 -0.6 407,653 + IAI47_20810 0.36 +1.6 407,654 - IAI47_20810 0.37 -1.7 407,654 - IAI47_20810 0.37 +2.3 407,654 - IAI47_20810 0.37 +1.4 407,654 - IAI47_20810 0.37 +0.3 407,654 - IAI47_20810 0.37 -0.9 407,655 + IAI47_20810 0.37 +0.8 407,656 - IAI47_20810 0.37 -1.2 407,656 - IAI47_20810 0.37 -1.2 407,729 + IAI47_20810 0.50 +0.4 407,730 - IAI47_20810 0.51 +1.3 407,730 - IAI47_20810 0.51 +3.8 407,747 + IAI47_20810 0.54 -0.9 407,748 - IAI47_20810 0.54 +0.7 407,748 - IAI47_20810 0.54 +0.0 407,748 - IAI47_20810 0.54 +0.9 407,748 - IAI47_20810 0.54 -1.7 407,763 - IAI47_20810 0.57 -0.9 407,764 + IAI47_20810 0.57 -2.7 407,764 + IAI47_20810 0.57 -1.4 407,861 - IAI47_20810 0.75 +1.9 407,861 - IAI47_20810 0.75 -0.7 407,988 - +0.8 408,044 + -0.2 408,044 + -0.3 408,044 + +1.1 408,044 + -0.0 408,044 + -1.6 408,044 + +2.9 408,044 + -2.2 408,044 + -0.9 408,044 + +0.2 408,044 + -1.3 408,044 + -0.4 408,044 + +2.6 408,045 - -0.6 408,045 - -0.1 408,045 - -2.7 408,045 - -0.2 408,045 - -1.2 408,045 - -0.9 408,045 - -0.6 408,045 - +0.8 408,045 - +0.4 408,045 - +0.9 408,045 - -0.5 408,045 - -2.7 408,045 - +1.9 408,045 - -1.7 408,048 + -1.9 408,049 - -1.7 408,049 - +0.6 408,049 - -1.6 408,075 - IAI47_20815 0.12 +0.3 408,116 + IAI47_20815 0.19 -2.4 408,158 + IAI47_20815 0.26 -0.6 408,158 + IAI47_20815 0.26 +0.4 408,159 - IAI47_20815 0.27 -0.9 408,185 + IAI47_20815 0.31 +0.4 408,185 + IAI47_20815 0.31 +0.6 408,185 + IAI47_20815 0.31 +1.1 408,185 + IAI47_20815 0.31 -1.0 408,185 + IAI47_20815 0.31 -2.7 408,186 - IAI47_20815 0.31 +0.4 408,186 - IAI47_20815 0.31 -1.6 408,186 - IAI47_20815 0.31 +3.2 408,186 - IAI47_20815 0.31 -1.6 408,186 - IAI47_20815 0.31 +0.3 408,190 - IAI47_20815 0.32 -0.7 408,190 - IAI47_20815 0.32 -2.3 408,275 + IAI47_20815 0.46 +1.2 408,276 - IAI47_20815 0.46 +0.3 408,304 + IAI47_20815 0.51 -0.2 408,305 - IAI47_20815 0.51 +0.1 408,318 + IAI47_20815 0.54 +0.2 408,343 + IAI47_20815 0.58 -1.2 408,343 + IAI47_20815 0.58 -0.2 408,343 + IAI47_20815 0.58 -0.1 408,364 + IAI47_20815 0.61 -1.2 408,381 + IAI47_20815 0.64 -0.6 408,381 + IAI47_20815 0.64 +0.1 408,382 - IAI47_20815 0.64 +1.2 408,385 - IAI47_20815 0.65 -0.7 408,404 + IAI47_20815 0.68 -2.6 408,424 + IAI47_20815 0.72 +1.0 408,424 + IAI47_20815 0.72 -1.6 408,425 - IAI47_20815 0.72 +1.4 408,446 + IAI47_20815 0.75 -1.6 408,463 + IAI47_20815 0.78 +1.4 408,463 + IAI47_20815 0.78 +1.3 408,463 + IAI47_20815 0.78 +0.6 408,463 + IAI47_20815 0.78 +0.6 408,463 + IAI47_20815 0.78 +0.0 408,463 + IAI47_20815 0.78 +0.8 408,502 + IAI47_20815 0.85 +1.4 408,528 + IAI47_20815 0.89 -1.9 408,528 + IAI47_20815 0.89 -2.7 408,528 + IAI47_20815 0.89 +0.4 408,529 - IAI47_20815 0.89 -1.2 408,533 + +0.5 408,533 + +2.0 408,534 - -0.9 408,534 - -0.9 408,534 - -1.6 408,545 - -2.7 408,638 + +1.7 408,638 + +0.7 408,649 - +2.6 408,649 - -1.9 408,716 + IAI47_20820 0.11 -1.2 408,716 + IAI47_20820 0.11 -0.3 408,717 - IAI47_20820 0.11 +2.0 408,717 - IAI47_20820 0.11 +0.2 408,754 - IAI47_20820 0.15 +0.3 408,813 + IAI47_20820 0.21 -0.4 408,813 + IAI47_20820 0.21 -0.1 408,814 - IAI47_20820 0.21 -0.3 408,814 - IAI47_20820 0.21 +1.4 408,814 - IAI47_20820 0.21 +0.3 408,851 + IAI47_20820 0.25 +0.0 408,881 + IAI47_20820 0.28 +1.7 408,881 + IAI47_20820 0.28 -1.9 408,882 - IAI47_20820 0.28 +1.9 408,894 - IAI47_20820 0.29 -1.7 408,894 - IAI47_20820 0.29 -0.2 408,914 + IAI47_20820 0.31 +2.6 408,914 + IAI47_20820 0.31 -1.2 408,915 - IAI47_20820 0.31 +1.4 408,970 + IAI47_20820 0.37 +0.5 408,971 - IAI47_20820 0.37 -0.1 408,971 - IAI47_20820 0.37 -1.4 408,990 + IAI47_20820 0.39 +0.8 408,990 + IAI47_20820 0.39 +0.3
Or see this region's nucleotide sequence