Experiment: Ying_sugar7 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_19370 and IAI47_19375 are separated by 539 nucleotides IAI47_19375 and IAI47_19380 are separated by 248 nucleotides
IAI47_19370: IAI47_19370 - MFS transporter, at 98,886 to 100,136
_19370
IAI47_19375: IAI47_19375 - omptin family outer membrane protease, at 100,676 to 101,614
_19375
IAI47_19380: IAI47_19380 - hypothetical protein, at 101,863 to 102,426
_19380
Position (kb) 100
101
102 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 99.680 kb on + strand, within IAI47_19370 at 99.680 kb on + strand, within IAI47_19370 at 99.697 kb on + strand, within IAI47_19370 at 99.697 kb on + strand, within IAI47_19370 at 99.698 kb on - strand, within IAI47_19370 at 99.758 kb on + strand, within IAI47_19370 at 99.797 kb on + strand, within IAI47_19370 at 99.809 kb on - strand, within IAI47_19370 at 99.831 kb on - strand, within IAI47_19370 at 99.831 kb on - strand, within IAI47_19370 at 99.847 kb on + strand, within IAI47_19370 at 99.847 kb on + strand, within IAI47_19370 at 99.847 kb on + strand, within IAI47_19370 at 99.847 kb on + strand, within IAI47_19370 at 99.848 kb on - strand, within IAI47_19370 at 99.848 kb on - strand, within IAI47_19370 at 99.848 kb on - strand, within IAI47_19370 at 99.860 kb on + strand, within IAI47_19370 at 99.861 kb on - strand, within IAI47_19370 at 99.861 kb on - strand, within IAI47_19370 at 99.861 kb on - strand, within IAI47_19370 at 99.878 kb on + strand, within IAI47_19370 at 99.879 kb on - strand, within IAI47_19370 at 99.879 kb on - strand, within IAI47_19370 at 99.919 kb on + strand, within IAI47_19370 at 99.919 kb on + strand, within IAI47_19370 at 99.920 kb on - strand, within IAI47_19370 at 99.957 kb on + strand, within IAI47_19370 at 99.958 kb on - strand, within IAI47_19370 at 99.958 kb on - strand, within IAI47_19370 at 99.958 kb on - strand, within IAI47_19370 at 99.985 kb on + strand, within IAI47_19370 at 100.018 kb on + strand at 100.049 kb on + strand at 100.050 kb on - strand at 100.050 kb on - strand at 100.055 kb on + strand at 100.075 kb on + strand at 100.075 kb on + strand at 100.092 kb on + strand at 100.092 kb on + strand at 100.092 kb on + strand at 100.093 kb on - strand at 100.124 kb on + strand at 100.137 kb on + strand at 100.137 kb on + strand at 100.137 kb on + strand at 100.137 kb on + strand at 100.138 kb on - strand at 100.162 kb on + strand at 100.180 kb on + strand at 100.180 kb on + strand at 100.181 kb on - strand at 100.181 kb on - strand at 100.190 kb on + strand at 100.190 kb on + strand at 100.191 kb on - strand at 100.191 kb on - strand at 100.193 kb on + strand at 100.194 kb on - strand at 100.194 kb on - strand at 100.194 kb on - strand at 100.231 kb on - strand at 100.241 kb on + strand at 100.242 kb on - strand at 100.242 kb on - strand at 100.242 kb on - strand at 100.242 kb on - strand at 100.243 kb on + strand at 100.316 kb on + strand at 100.316 kb on + strand at 100.316 kb on + strand at 100.316 kb on + strand at 100.317 kb on - strand at 100.490 kb on + strand at 100.490 kb on + strand at 100.490 kb on + strand at 100.491 kb on - strand at 100.599 kb on + strand at 100.600 kb on - strand at 100.601 kb on + strand at 100.601 kb on + strand at 100.601 kb on + strand at 100.601 kb on + strand at 100.601 kb on + strand at 100.601 kb on + strand at 100.602 kb on - strand at 100.602 kb on - strand at 100.602 kb on - strand at 100.602 kb on - strand at 100.619 kb on - strand at 100.643 kb on + strand at 100.644 kb on - strand at 100.652 kb on + strand at 100.652 kb on + strand at 100.673 kb on - strand at 100.673 kb on - strand at 100.687 kb on + strand at 100.875 kb on + strand, within IAI47_19375 at 100.876 kb on - strand, within IAI47_19375 at 100.905 kb on + strand, within IAI47_19375 at 100.905 kb on + strand, within IAI47_19375 at 100.919 kb on + strand, within IAI47_19375 at 100.919 kb on + strand, within IAI47_19375 at 100.919 kb on + strand, within IAI47_19375 at 100.919 kb on + strand, within IAI47_19375 at 100.919 kb on + strand, within IAI47_19375 at 100.920 kb on - strand, within IAI47_19375 at 100.978 kb on + strand, within IAI47_19375 at 100.978 kb on + strand, within IAI47_19375 at 100.979 kb on - strand, within IAI47_19375 at 100.979 kb on - strand, within IAI47_19375 at 100.979 kb on - strand, within IAI47_19375 at 100.988 kb on + strand, within IAI47_19375 at 100.988 kb on + strand, within IAI47_19375 at 100.988 kb on + strand, within IAI47_19375 at 100.989 kb on - strand, within IAI47_19375 at 100.989 kb on - strand, within IAI47_19375 at 100.989 kb on - strand, within IAI47_19375 at 100.989 kb on - strand, within IAI47_19375 at 101.053 kb on + strand, within IAI47_19375 at 101.053 kb on + strand, within IAI47_19375 at 101.054 kb on - strand, within IAI47_19375 at 101.054 kb on - strand, within IAI47_19375 at 101.058 kb on - strand, within IAI47_19375 at 101.069 kb on + strand, within IAI47_19375 at 101.070 kb on - strand, within IAI47_19375 at 101.070 kb on - strand, within IAI47_19375 at 101.083 kb on + strand, within IAI47_19375 at 101.084 kb on - strand, within IAI47_19375 at 101.084 kb on - strand, within IAI47_19375 at 101.097 kb on + strand, within IAI47_19375 at 101.098 kb on - strand, within IAI47_19375 at 101.098 kb on - strand, within IAI47_19375 at 101.098 kb on - strand, within IAI47_19375 at 101.111 kb on + strand, within IAI47_19375 at 101.111 kb on + strand, within IAI47_19375 at 101.111 kb on + strand, within IAI47_19375 at 101.111 kb on + strand, within IAI47_19375 at 101.112 kb on - strand, within IAI47_19375 at 101.112 kb on - strand, within IAI47_19375 at 101.112 kb on - strand, within IAI47_19375 at 101.112 kb on - strand, within IAI47_19375 at 101.112 kb on - strand, within IAI47_19375 at 101.178 kb on - strand, within IAI47_19375 at 101.178 kb on - strand, within IAI47_19375 at 101.183 kb on + strand, within IAI47_19375 at 101.183 kb on + strand, within IAI47_19375 at 101.183 kb on + strand, within IAI47_19375 at 101.184 kb on - strand, within IAI47_19375 at 101.238 kb on - strand, within IAI47_19375 at 101.261 kb on + strand, within IAI47_19375 at 101.261 kb on + strand, within IAI47_19375 at 101.261 kb on + strand, within IAI47_19375 at 101.262 kb on - strand, within IAI47_19375 at 101.262 kb on - strand, within IAI47_19375 at 101.262 kb on - strand, within IAI47_19375 at 101.287 kb on + strand, within IAI47_19375 at 101.288 kb on - strand, within IAI47_19375 at 101.288 kb on - strand, within IAI47_19375 at 101.313 kb on + strand, within IAI47_19375 at 101.313 kb on + strand, within IAI47_19375 at 101.360 kb on + strand, within IAI47_19375 at 101.361 kb on - strand, within IAI47_19375 at 101.361 kb on - strand, within IAI47_19375 at 101.361 kb on - strand, within IAI47_19375 at 101.361 kb on - strand, within IAI47_19375 at 101.361 kb on - strand, within IAI47_19375 at 101.405 kb on + strand, within IAI47_19375 at 101.433 kb on - strand, within IAI47_19375 at 101.435 kb on + strand, within IAI47_19375 at 101.435 kb on + strand, within IAI47_19375 at 101.435 kb on + strand, within IAI47_19375 at 101.436 kb on - strand, within IAI47_19375 at 101.436 kb on - strand, within IAI47_19375 at 101.436 kb on - strand, within IAI47_19375 at 101.436 kb on - strand, within IAI47_19375 at 101.436 kb on - strand, within IAI47_19375 at 101.475 kb on - strand, within IAI47_19375 at 101.483 kb on + strand, within IAI47_19375 at 101.678 kb on + strand at 101.679 kb on - strand at 101.689 kb on + strand at 101.689 kb on + strand at 101.690 kb on - strand at 101.690 kb on - strand at 101.691 kb on + strand at 101.692 kb on - strand at 101.692 kb on - strand at 101.713 kb on + strand at 101.720 kb on - strand at 101.766 kb on - strand at 101.766 kb on - strand at 101.802 kb on + strand at 101.809 kb on - strand at 101.816 kb on + strand at 101.898 kb on - strand at 101.898 kb on - strand at 101.951 kb on - strand, within IAI47_19380 at 101.967 kb on + strand, within IAI47_19380 at 101.984 kb on + strand, within IAI47_19380 at 101.994 kb on - strand, within IAI47_19380 at 102.001 kb on - strand, within IAI47_19380 at 102.074 kb on - strand, within IAI47_19380 at 102.092 kb on + strand, within IAI47_19380 at 102.115 kb on - strand, within IAI47_19380 at 102.129 kb on - strand, within IAI47_19380 at 102.145 kb on - strand, within IAI47_19380 at 102.172 kb on - strand, within IAI47_19380 at 102.314 kb on - strand, within IAI47_19380 at 102.377 kb on - strand at 102.379 kb on - strand at 102.412 kb on - strand at 102.471 kb on + strand at 102.485 kb on + strand at 102.485 kb on + strand at 102.486 kb on - strand at 102.486 kb on - strand at 102.488 kb on + strand at 102.488 kb on + strand at 102.488 kb on + strand at 102.489 kb on - strand at 102.489 kb on - strand at 102.504 kb on - strand at 102.529 kb on + strand at 102.530 kb on - strand at 102.532 kb on + strand at 102.533 kb on - strand at 102.533 kb on - strand at 102.575 kb on - strand at 102.580 kb on + strand at 102.593 kb on + strand at 102.607 kb on + strand at 102.607 kb on + strand at 102.607 kb on + strand at 102.608 kb on - strand at 102.612 kb on + strand at 102.612 kb on + strand at 102.612 kb on + strand at 102.613 kb on - strand at 102.613 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 2 remove 99,680 + IAI47_19370 0.63 -1.7 99,680 + IAI47_19370 0.63 +1.1 99,697 + IAI47_19370 0.65 +0.6 99,697 + IAI47_19370 0.65 -0.3 99,698 - IAI47_19370 0.65 +0.6 99,758 + IAI47_19370 0.70 +1.6 99,797 + IAI47_19370 0.73 +0.6 99,809 - IAI47_19370 0.74 -1.9 99,831 - IAI47_19370 0.76 +0.8 99,831 - IAI47_19370 0.76 +0.7 99,847 + IAI47_19370 0.77 +0.4 99,847 + IAI47_19370 0.77 +0.4 99,847 + IAI47_19370 0.77 +0.1 99,847 + IAI47_19370 0.77 -0.6 99,848 - IAI47_19370 0.77 -0.5 99,848 - IAI47_19370 0.77 +1.5 99,848 - IAI47_19370 0.77 +0.4 99,860 + IAI47_19370 0.78 +0.2 99,861 - IAI47_19370 0.78 -2.5 99,861 - IAI47_19370 0.78 +0.5 99,861 - IAI47_19370 0.78 -3.2 99,878 + IAI47_19370 0.79 +1.4 99,879 - IAI47_19370 0.79 -0.2 99,879 - IAI47_19370 0.79 +1.4 99,919 + IAI47_19370 0.83 +0.7 99,919 + IAI47_19370 0.83 +0.1 99,920 - IAI47_19370 0.83 -0.7 99,957 + IAI47_19370 0.86 +1.4 99,958 - IAI47_19370 0.86 -0.2 99,958 - IAI47_19370 0.86 -0.2 99,958 - IAI47_19370 0.86 -0.2 99,985 + IAI47_19370 0.88 +0.4 100,018 + +0.3 100,049 + -2.8 100,050 - +3.4 100,050 - +0.2 100,055 + +0.9 100,075 + -0.9 100,075 + -0.6 100,092 + -0.2 100,092 + -0.6 100,092 + -0.6 100,093 - -0.3 100,124 + -2.4 100,137 + -0.4 100,137 + +1.2 100,137 + -1.0 100,137 + +1.6 100,138 - -0.6 100,162 + -0.6 100,180 + -1.2 100,180 + +1.4 100,181 - -0.8 100,181 - -1.4 100,190 + -1.7 100,190 + +0.3 100,191 - +1.4 100,191 - -0.6 100,193 + -1.4 100,194 - +1.4 100,194 - -1.4 100,194 - -0.4 100,231 - -0.7 100,241 + +0.5 100,242 - -1.4 100,242 - +0.9 100,242 - -0.2 100,242 - +0.8 100,243 + -0.9 100,316 + +1.2 100,316 + +1.6 100,316 + -0.2 100,316 + -1.2 100,317 - +0.2 100,490 + +0.4 100,490 + +2.7 100,490 + -0.9 100,491 - -1.4 100,599 + +0.3 100,600 - +0.5 100,601 + +2.2 100,601 + +1.4 100,601 + -1.2 100,601 + -0.9 100,601 + +1.1 100,601 + +1.3 100,602 - -1.9 100,602 - +0.4 100,602 - -1.2 100,602 - -1.2 100,619 - -2.0 100,643 + +0.7 100,644 - +0.7 100,652 + +0.0 100,652 + +0.6 100,673 - +1.0 100,673 - +0.8 100,687 + +2.2 100,875 + IAI47_19375 0.21 -0.3 100,876 - IAI47_19375 0.21 -2.4 100,905 + IAI47_19375 0.24 -0.6 100,905 + IAI47_19375 0.24 -2.5 100,919 + IAI47_19375 0.26 +0.4 100,919 + IAI47_19375 0.26 +0.6 100,919 + IAI47_19375 0.26 +0.9 100,919 + IAI47_19375 0.26 -0.5 100,919 + IAI47_19375 0.26 -0.9 100,920 - IAI47_19375 0.26 +0.2 100,978 + IAI47_19375 0.32 +0.4 100,978 + IAI47_19375 0.32 -1.1 100,979 - IAI47_19375 0.32 -1.0 100,979 - IAI47_19375 0.32 -1.7 100,979 - IAI47_19375 0.32 +0.6 100,988 + IAI47_19375 0.33 -1.2 100,988 + IAI47_19375 0.33 -2.0 100,988 + IAI47_19375 0.33 -0.7 100,989 - IAI47_19375 0.33 -1.4 100,989 - IAI47_19375 0.33 -0.6 100,989 - IAI47_19375 0.33 -2.0 100,989 - IAI47_19375 0.33 +1.4 101,053 + IAI47_19375 0.40 -1.9 101,053 + IAI47_19375 0.40 +0.3 101,054 - IAI47_19375 0.40 -0.7 101,054 - IAI47_19375 0.40 -2.2 101,058 - IAI47_19375 0.41 +1.6 101,069 + IAI47_19375 0.42 +0.0 101,070 - IAI47_19375 0.42 +0.7 101,070 - IAI47_19375 0.42 +1.7 101,083 + IAI47_19375 0.43 +0.7 101,084 - IAI47_19375 0.43 -0.6 101,084 - IAI47_19375 0.43 -1.2 101,097 + IAI47_19375 0.45 +0.7 101,098 - IAI47_19375 0.45 +0.2 101,098 - IAI47_19375 0.45 +1.8 101,098 - IAI47_19375 0.45 +0.8 101,111 + IAI47_19375 0.46 -0.9 101,111 + IAI47_19375 0.46 +2.2 101,111 + IAI47_19375 0.46 -0.3 101,111 + IAI47_19375 0.46 +2.1 101,112 - IAI47_19375 0.46 -2.7 101,112 - IAI47_19375 0.46 -2.0 101,112 - IAI47_19375 0.46 +0.0 101,112 - IAI47_19375 0.46 -0.8 101,112 - IAI47_19375 0.46 -0.6 101,178 - IAI47_19375 0.53 +0.4 101,178 - IAI47_19375 0.53 -1.4 101,183 + IAI47_19375 0.54 -1.4 101,183 + IAI47_19375 0.54 -2.0 101,183 + IAI47_19375 0.54 -1.4 101,184 - IAI47_19375 0.54 -0.2 101,238 - IAI47_19375 0.60 -0.7 101,261 + IAI47_19375 0.62 -1.2 101,261 + IAI47_19375 0.62 -3.0 101,261 + IAI47_19375 0.62 +0.3 101,262 - IAI47_19375 0.62 +0.1 101,262 - IAI47_19375 0.62 -0.2 101,262 - IAI47_19375 0.62 +0.9 101,287 + IAI47_19375 0.65 -1.2 101,288 - IAI47_19375 0.65 +2.1 101,288 - IAI47_19375 0.65 +0.4 101,313 + IAI47_19375 0.68 -1.7 101,313 + IAI47_19375 0.68 +0.4 101,360 + IAI47_19375 0.73 -0.9 101,361 - IAI47_19375 0.73 -0.2 101,361 - IAI47_19375 0.73 -1.6 101,361 - IAI47_19375 0.73 +2.3 101,361 - IAI47_19375 0.73 -1.9 101,361 - IAI47_19375 0.73 -1.2 101,405 + IAI47_19375 0.78 -2.2 101,433 - IAI47_19375 0.81 -2.0 101,435 + IAI47_19375 0.81 +0.1 101,435 + IAI47_19375 0.81 +0.8 101,435 + IAI47_19375 0.81 -0.3 101,436 - IAI47_19375 0.81 +0.6 101,436 - IAI47_19375 0.81 +0.0 101,436 - IAI47_19375 0.81 -1.8 101,436 - IAI47_19375 0.81 +1.1 101,436 - IAI47_19375 0.81 -1.2 101,475 - IAI47_19375 0.85 +0.4 101,483 + IAI47_19375 0.86 -1.5 101,678 + -0.0 101,679 - +3.2 101,689 + +2.0 101,689 + -0.9 101,690 - -0.3 101,690 - +1.5 101,691 + -2.2 101,692 - -1.7 101,692 - +1.4 101,713 + -0.7 101,720 - -1.2 101,766 - -0.1 101,766 - +0.0 101,802 + +2.2 101,809 - -0.6 101,816 + -0.6 101,898 - -0.9 101,898 - -0.9 101,951 - IAI47_19380 0.16 +0.1 101,967 + IAI47_19380 0.18 -1.9 101,984 + IAI47_19380 0.21 -0.4 101,994 - IAI47_19380 0.23 +1.6 102,001 - IAI47_19380 0.24 +1.1 102,074 - IAI47_19380 0.37 -1.4 102,092 + IAI47_19380 0.41 -1.0 102,115 - IAI47_19380 0.45 +1.4 102,129 - IAI47_19380 0.47 +0.2 102,145 - IAI47_19380 0.50 -0.9 102,172 - IAI47_19380 0.55 -2.6 102,314 - IAI47_19380 0.80 -0.2 102,377 - -0.8 102,379 - -0.2 102,412 - -0.2 102,471 + +0.3 102,485 + +1.4 102,485 + +1.8 102,486 - +0.7 102,486 - +0.4 102,488 + +1.4 102,488 + -1.9 102,488 + -0.2 102,489 - -0.2 102,489 - -0.5 102,504 - -1.7 102,529 + -1.5 102,530 - +0.3 102,532 + -0.6 102,533 - +0.4 102,533 - +1.3 102,575 - +1.3 102,580 + +0.9 102,593 + -2.1 102,607 + +0.4 102,607 + -1.4 102,607 + -0.4 102,608 - +0.7 102,612 + -3.3 102,612 + +0.1 102,612 + -0.9 102,613 - -1.4 102,613 - +0.7
Or see this region's nucleotide sequence