Experiment: Ying_sugar7 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_18970 and IAI47_18975 are separated by 115 nucleotides IAI47_18975 and IAI47_18980 are separated by 43 nucleotides IAI47_18980 and IAI47_18985 overlap by 4 nucleotides IAI47_18985 and IAI47_18990 are separated by 137 nucleotides
IAI47_18970: IAI47_18970 - hypothetical protein, at 27,782 to 28,102
_18970
IAI47_18975: IAI47_18975 - B3/4 domain-containing protein, at 28,218 to 28,913
_18975
IAI47_18980: IAI47_18980 - helix-turn-helix domain-containing protein, at 28,957 to 29,559
_18980
IAI47_18985: IAI47_18985 - MarR family transcriptional regulator, at 29,556 to 30,071
_18985
IAI47_18990: IAI47_18990 - MFS transporter, at 30,209 to 31,363
_18990
Position (kb) 28
29
30 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 28.005 kb on + strand, within IAI47_18970 at 28.005 kb on + strand, within IAI47_18970 at 28.005 kb on + strand, within IAI47_18970 at 28.006 kb on - strand, within IAI47_18970 at 28.008 kb on + strand, within IAI47_18970 at 28.008 kb on + strand, within IAI47_18970 at 28.008 kb on + strand, within IAI47_18970 at 28.009 kb on - strand, within IAI47_18970 at 28.009 kb on - strand, within IAI47_18970 at 28.009 kb on - strand, within IAI47_18970 at 28.009 kb on - strand, within IAI47_18970 at 28.084 kb on + strand at 28.085 kb on - strand at 28.086 kb on + strand at 28.086 kb on + strand at 28.086 kb on + strand at 28.087 kb on - strand at 28.087 kb on - strand at 28.097 kb on - strand at 28.103 kb on + strand at 28.103 kb on + strand at 28.103 kb on + strand at 28.103 kb on + strand at 28.103 kb on + strand at 28.104 kb on - strand at 28.104 kb on - strand at 28.104 kb on - strand at 28.104 kb on - strand at 28.104 kb on - strand at 28.105 kb on + strand at 28.105 kb on + strand at 28.105 kb on + strand at 28.105 kb on + strand at 28.106 kb on - strand at 28.106 kb on - strand at 28.106 kb on - strand at 28.118 kb on + strand at 28.118 kb on + strand at 28.118 kb on + strand at 28.118 kb on + strand at 28.118 kb on + strand at 28.118 kb on + strand at 28.118 kb on + strand at 28.119 kb on - strand at 28.119 kb on - strand at 28.119 kb on - strand at 28.119 kb on - strand at 28.119 kb on - strand at 28.187 kb on + strand at 28.278 kb on + strand at 28.279 kb on - strand at 28.279 kb on - strand at 28.329 kb on - strand, within IAI47_18975 at 28.349 kb on + strand, within IAI47_18975 at 28.350 kb on - strand, within IAI47_18975 at 28.423 kb on - strand, within IAI47_18975 at 28.545 kb on - strand, within IAI47_18975 at 28.546 kb on + strand, within IAI47_18975 at 28.546 kb on + strand, within IAI47_18975 at 28.546 kb on + strand, within IAI47_18975 at 28.546 kb on + strand, within IAI47_18975 at 28.546 kb on + strand, within IAI47_18975 at 28.546 kb on + strand, within IAI47_18975 at 28.546 kb on + strand, within IAI47_18975 at 28.547 kb on - strand, within IAI47_18975 at 28.547 kb on - strand, within IAI47_18975 at 28.547 kb on - strand, within IAI47_18975 at 28.547 kb on - strand, within IAI47_18975 at 28.583 kb on - strand, within IAI47_18975 at 28.603 kb on + strand, within IAI47_18975 at 28.603 kb on + strand, within IAI47_18975 at 28.603 kb on + strand, within IAI47_18975 at 28.603 kb on + strand, within IAI47_18975 at 28.698 kb on - strand, within IAI47_18975 at 28.822 kb on - strand, within IAI47_18975 at 28.830 kb on - strand, within IAI47_18975 at 28.830 kb on - strand, within IAI47_18975 at 28.836 kb on + strand, within IAI47_18975 at 28.836 kb on + strand, within IAI47_18975 at 28.908 kb on + strand at 28.908 kb on + strand at 28.908 kb on + strand at 28.908 kb on + strand at 28.908 kb on + strand at 28.909 kb on - strand at 28.909 kb on - strand at 28.909 kb on - strand at 28.909 kb on - strand at 28.933 kb on + strand at 28.939 kb on - strand at 28.946 kb on - strand at 28.948 kb on + strand at 28.977 kb on - strand at 29.010 kb on + strand at 29.010 kb on + strand at 29.046 kb on + strand, within IAI47_18980 at 29.046 kb on + strand, within IAI47_18980 at 29.047 kb on - strand, within IAI47_18980 at 29.098 kb on - strand, within IAI47_18980 at 29.313 kb on + strand, within IAI47_18980 at 29.325 kb on - strand, within IAI47_18980 at 29.325 kb on - strand, within IAI47_18980 at 29.484 kb on + strand, within IAI47_18980 at 29.484 kb on + strand, within IAI47_18980 at 29.484 kb on + strand, within IAI47_18980 at 29.484 kb on + strand, within IAI47_18980 at 29.485 kb on - strand, within IAI47_18980 at 29.485 kb on - strand, within IAI47_18980 at 29.497 kb on + strand, within IAI47_18980 at 29.497 kb on + strand, within IAI47_18980 at 29.497 kb on + strand, within IAI47_18980 at 29.498 kb on - strand, within IAI47_18980 at 29.498 kb on - strand, within IAI47_18980 at 29.498 kb on - strand, within IAI47_18980 at 29.498 kb on - strand, within IAI47_18980 at 29.523 kb on + strand at 29.579 kb on + strand at 29.580 kb on - strand at 29.580 kb on - strand at 29.580 kb on - strand at 29.580 kb on - strand at 29.750 kb on + strand, within IAI47_18985 at 29.750 kb on + strand, within IAI47_18985 at 29.751 kb on - strand, within IAI47_18985 at 29.751 kb on - strand, within IAI47_18985 at 29.751 kb on - strand, within IAI47_18985 at 29.751 kb on - strand, within IAI47_18985 at 29.751 kb on - strand, within IAI47_18985 at 29.830 kb on - strand, within IAI47_18985 at 29.845 kb on + strand, within IAI47_18985 at 29.901 kb on + strand, within IAI47_18985 at 29.901 kb on + strand, within IAI47_18985 at 29.902 kb on - strand, within IAI47_18985 at 29.902 kb on - strand, within IAI47_18985 at 29.902 kb on - strand, within IAI47_18985 at 29.902 kb on - strand, within IAI47_18985 at 29.902 kb on - strand, within IAI47_18985 at 29.902 kb on - strand, within IAI47_18985 at 30.059 kb on + strand at 30.071 kb on + strand at 30.071 kb on + strand at 30.071 kb on + strand at 30.071 kb on + strand at 30.071 kb on + strand at 30.071 kb on + strand at 30.072 kb on - strand at 30.072 kb on - strand at 30.082 kb on + strand at 30.082 kb on + strand at 30.095 kb on + strand at 30.095 kb on + strand at 30.095 kb on + strand at 30.095 kb on + strand at 30.095 kb on + strand at 30.096 kb on - strand at 30.096 kb on - strand at 30.122 kb on + strand at 30.122 kb on + strand at 30.122 kb on + strand at 30.123 kb on - strand at 30.123 kb on - strand at 30.123 kb on - strand at 30.123 kb on - strand at 30.264 kb on + strand at 30.286 kb on + strand at 30.287 kb on - strand at 30.287 kb on - strand at 30.338 kb on - strand, within IAI47_18990 at 30.418 kb on + strand, within IAI47_18990
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 2 remove 28,005 + IAI47_18970 0.69 -1.2 28,005 + IAI47_18970 0.69 +2.2 28,005 + IAI47_18970 0.69 -0.5 28,006 - IAI47_18970 0.70 +0.3 28,008 + IAI47_18970 0.70 +2.1 28,008 + IAI47_18970 0.70 -3.0 28,008 + IAI47_18970 0.70 -2.8 28,009 - IAI47_18970 0.71 -1.7 28,009 - IAI47_18970 0.71 -0.8 28,009 - IAI47_18970 0.71 -0.1 28,009 - IAI47_18970 0.71 +1.8 28,084 + +4.0 28,085 - -0.2 28,086 + +0.4 28,086 + -2.6 28,086 + +2.3 28,087 - +1.0 28,087 - +0.7 28,097 - +1.4 28,103 + -0.6 28,103 + -1.7 28,103 + +0.8 28,103 + -0.3 28,103 + -1.7 28,104 - +0.6 28,104 - -1.1 28,104 - -0.9 28,104 - -0.1 28,104 - -1.6 28,105 + +0.9 28,105 + -1.9 28,105 + -2.5 28,105 + +0.8 28,106 - +1.4 28,106 - +1.4 28,106 - -1.4 28,118 + +0.7 28,118 + -0.4 28,118 + +0.7 28,118 + -1.7 28,118 + +0.2 28,118 + +0.1 28,118 + -1.0 28,119 - +2.0 28,119 - +0.3 28,119 - +0.4 28,119 - -0.9 28,119 - +1.4 28,187 + -0.9 28,278 + -1.1 28,279 - -0.2 28,279 - +0.3 28,329 - IAI47_18975 0.16 -0.6 28,349 + IAI47_18975 0.19 -0.2 28,350 - IAI47_18975 0.19 +0.4 28,423 - IAI47_18975 0.29 -1.4 28,545 - IAI47_18975 0.47 -1.3 28,546 + IAI47_18975 0.47 +0.3 28,546 + IAI47_18975 0.47 +0.7 28,546 + IAI47_18975 0.47 +0.6 28,546 + IAI47_18975 0.47 +0.6 28,546 + IAI47_18975 0.47 -0.6 28,546 + IAI47_18975 0.47 +0.1 28,546 + IAI47_18975 0.47 +0.1 28,547 - IAI47_18975 0.47 +1.0 28,547 - IAI47_18975 0.47 +1.8 28,547 - IAI47_18975 0.47 -2.7 28,547 - IAI47_18975 0.47 -1.4 28,583 - IAI47_18975 0.52 -0.2 28,603 + IAI47_18975 0.55 -1.5 28,603 + IAI47_18975 0.55 -1.9 28,603 + IAI47_18975 0.55 -0.2 28,603 + IAI47_18975 0.55 -1.4 28,698 - IAI47_18975 0.69 +0.6 28,822 - IAI47_18975 0.87 -1.7 28,830 - IAI47_18975 0.88 -1.1 28,830 - IAI47_18975 0.88 -0.6 28,836 + IAI47_18975 0.89 -0.3 28,836 + IAI47_18975 0.89 +0.8 28,908 + -0.4 28,908 + -0.1 28,908 + -0.7 28,908 + +1.4 28,908 + -0.5 28,909 - +0.5 28,909 - -0.2 28,909 - -2.7 28,909 - +0.4 28,933 + -0.8 28,939 - +0.6 28,946 - +2.8 28,948 + +0.3 28,977 - +0.8 29,010 + +1.9 29,010 + +0.4 29,046 + IAI47_18980 0.15 -0.9 29,046 + IAI47_18980 0.15 +1.1 29,047 - IAI47_18980 0.15 +1.9 29,098 - IAI47_18980 0.23 +2.3 29,313 + IAI47_18980 0.59 -0.9 29,325 - IAI47_18980 0.61 -0.6 29,325 - IAI47_18980 0.61 -1.4 29,484 + IAI47_18980 0.87 -0.4 29,484 + IAI47_18980 0.87 +0.6 29,484 + IAI47_18980 0.87 -1.4 29,484 + IAI47_18980 0.87 -2.0 29,485 - IAI47_18980 0.88 -1.9 29,485 - IAI47_18980 0.88 -1.8 29,497 + IAI47_18980 0.90 +0.4 29,497 + IAI47_18980 0.90 -0.8 29,497 + IAI47_18980 0.90 -1.0 29,498 - IAI47_18980 0.90 -1.9 29,498 - IAI47_18980 0.90 +1.7 29,498 - IAI47_18980 0.90 +0.1 29,498 - IAI47_18980 0.90 -0.7 29,523 + -2.3 29,579 + -0.9 29,580 - +2.0 29,580 - -0.6 29,580 - +0.7 29,580 - -0.5 29,750 + IAI47_18985 0.38 -0.6 29,750 + IAI47_18985 0.38 -0.7 29,751 - IAI47_18985 0.38 +1.7 29,751 - IAI47_18985 0.38 -1.9 29,751 - IAI47_18985 0.38 -1.0 29,751 - IAI47_18985 0.38 +1.4 29,751 - IAI47_18985 0.38 -3.0 29,830 - IAI47_18985 0.53 -0.4 29,845 + IAI47_18985 0.56 -0.4 29,901 + IAI47_18985 0.67 -0.9 29,901 + IAI47_18985 0.67 -1.2 29,902 - IAI47_18985 0.67 -0.9 29,902 - IAI47_18985 0.67 -0.5 29,902 - IAI47_18985 0.67 -0.9 29,902 - IAI47_18985 0.67 -1.6 29,902 - IAI47_18985 0.67 +0.4 29,902 - IAI47_18985 0.67 +1.1 30,059 + -0.9 30,071 + +0.4 30,071 + -0.8 30,071 + -0.2 30,071 + -1.2 30,071 + -0.5 30,071 + -3.1 30,072 - -0.2 30,072 - -0.5 30,082 + +1.4 30,082 + +1.3 30,095 + -1.6 30,095 + +1.0 30,095 + +0.2 30,095 + +0.2 30,095 + -1.0 30,096 - +0.7 30,096 - -1.0 30,122 + -1.7 30,122 + +0.6 30,122 + +1.4 30,123 - +2.5 30,123 - -3.1 30,123 - +0.2 30,123 - -0.2 30,264 + +0.5 30,286 + -1.1 30,287 - +1.0 30,287 - -1.6 30,338 - IAI47_18990 0.11 +0.0 30,418 + IAI47_18990 0.18 +0.2
Or see this region's nucleotide sequence