Experiment: Ying_sugar7 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_18915 and IAI47_18920 are separated by 391 nucleotides IAI47_18920 and IAI47_18925 overlap by 47 nucleotides IAI47_18925 and IAI47_18930 are separated by 96 nucleotides IAI47_18930 and IAI47_18935 overlap by 1 nucleotides IAI47_18935 and IAI47_18940 overlap by 4 nucleotides
IAI47_18915: IAI47_18915 - GNAT family N-acetyltransferase, at 20,758 to 21,312
_18915
IAI47_18920: IAI47_18920 - TetR/AcrR family transcriptional regulator, at 21,704 to 22,291
_18920
IAI47_18925: IAI47_18925 - LysR family transcriptional regulator, at 22,245 to 23,138
_18925
IAI47_18930: IAI47_18930 - carboxymuconolactone decarboxylase family protein, at 23,235 to 23,540
_18930
IAI47_18935: IAI47_18935 - tautomerase family protein, at 23,540 to 23,929
_18935
IAI47_18940: IAI47_18940 - DUF4865 family protein, at 23,926 to 24,453
_18940
Position (kb) 22
23
24 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 21.253 kb on + strand, within IAI47_18915 at 21.253 kb on + strand, within IAI47_18915 at 21.253 kb on + strand, within IAI47_18915 at 21.253 kb on + strand, within IAI47_18915 at 21.253 kb on + strand, within IAI47_18915 at 21.253 kb on + strand, within IAI47_18915 at 21.253 kb on + strand, within IAI47_18915 at 21.253 kb on + strand, within IAI47_18915 at 21.253 kb on + strand, within IAI47_18915 at 21.253 kb on + strand, within IAI47_18915 at 21.253 kb on + strand, within IAI47_18915 at 21.254 kb on - strand, within IAI47_18915 at 21.254 kb on - strand, within IAI47_18915 at 21.254 kb on - strand, within IAI47_18915 at 21.254 kb on - strand, within IAI47_18915 at 21.254 kb on - strand, within IAI47_18915 at 21.254 kb on - strand, within IAI47_18915 at 21.255 kb on + strand, within IAI47_18915 at 21.256 kb on - strand, within IAI47_18915 at 21.321 kb on + strand at 21.321 kb on + strand at 21.321 kb on + strand at 21.321 kb on + strand at 21.321 kb on + strand at 21.321 kb on + strand at 21.321 kb on + strand at 21.321 kb on + strand at 21.321 kb on + strand at 21.322 kb on - strand at 21.322 kb on - strand at 21.322 kb on - strand at 21.322 kb on - strand at 21.323 kb on + strand at 21.323 kb on + strand at 21.323 kb on + strand at 21.323 kb on + strand at 21.324 kb on - strand at 21.324 kb on - strand at 21.416 kb on + strand at 21.417 kb on - strand at 21.421 kb on + strand at 21.430 kb on + strand at 21.431 kb on - strand at 21.446 kb on + strand at 21.446 kb on + strand at 21.446 kb on + strand at 21.446 kb on + strand at 21.447 kb on - strand at 21.447 kb on - strand at 21.447 kb on - strand at 21.453 kb on - strand at 21.496 kb on + strand at 21.497 kb on - strand at 21.499 kb on - strand at 21.536 kb on + strand at 21.536 kb on + strand at 21.536 kb on + strand at 21.536 kb on + strand at 21.537 kb on - strand at 21.564 kb on - strand at 21.579 kb on + strand at 21.580 kb on - strand at 21.594 kb on + strand at 21.594 kb on + strand at 21.595 kb on - strand at 21.630 kb on + strand at 21.667 kb on + strand at 21.745 kb on + strand at 21.745 kb on + strand at 21.746 kb on - strand at 21.746 kb on - strand at 21.746 kb on - strand at 21.746 kb on - strand at 21.763 kb on + strand, within IAI47_18920 at 21.763 kb on + strand, within IAI47_18920 at 21.763 kb on + strand, within IAI47_18920 at 21.764 kb on - strand, within IAI47_18920 at 21.780 kb on + strand, within IAI47_18920 at 21.903 kb on + strand, within IAI47_18920 at 21.937 kb on + strand, within IAI47_18920 at 21.937 kb on + strand, within IAI47_18920 at 21.938 kb on - strand, within IAI47_18920 at 21.961 kb on + strand, within IAI47_18920 at 21.961 kb on + strand, within IAI47_18920 at 21.962 kb on - strand, within IAI47_18920 at 21.962 kb on - strand, within IAI47_18920 at 21.962 kb on - strand, within IAI47_18920 at 22.000 kb on + strand, within IAI47_18920 at 22.000 kb on + strand, within IAI47_18920 at 22.001 kb on - strand, within IAI47_18920 at 22.079 kb on + strand, within IAI47_18920 at 22.079 kb on + strand, within IAI47_18920 at 22.079 kb on + strand, within IAI47_18920 at 22.080 kb on - strand, within IAI47_18920 at 22.080 kb on - strand, within IAI47_18920 at 22.080 kb on - strand, within IAI47_18920 at 22.080 kb on - strand, within IAI47_18920 at 22.080 kb on - strand, within IAI47_18920 at 22.080 kb on - strand, within IAI47_18920 at 22.174 kb on + strand, within IAI47_18920 at 22.174 kb on + strand, within IAI47_18920 at 22.175 kb on - strand, within IAI47_18920 at 22.175 kb on - strand, within IAI47_18920 at 22.204 kb on + strand, within IAI47_18920 at 22.246 kb on + strand at 22.247 kb on - strand at 22.310 kb on + strand at 22.310 kb on + strand at 22.360 kb on + strand, within IAI47_18925 at 22.360 kb on + strand, within IAI47_18925 at 22.409 kb on + strand, within IAI47_18925 at 22.409 kb on + strand, within IAI47_18925 at 22.409 kb on + strand, within IAI47_18925 at 22.410 kb on - strand, within IAI47_18925 at 22.410 kb on - strand, within IAI47_18925 at 22.410 kb on - strand, within IAI47_18925 at 22.410 kb on - strand, within IAI47_18925 at 22.410 kb on - strand, within IAI47_18925 at 22.431 kb on + strand, within IAI47_18925 at 22.431 kb on + strand, within IAI47_18925 at 22.432 kb on - strand, within IAI47_18925 at 22.432 kb on - strand, within IAI47_18925 at 22.432 kb on - strand, within IAI47_18925 at 22.432 kb on - strand, within IAI47_18925 at 22.434 kb on - strand, within IAI47_18925 at 22.434 kb on - strand, within IAI47_18925 at 22.729 kb on - strand, within IAI47_18925 at 22.729 kb on - strand, within IAI47_18925 at 22.841 kb on + strand, within IAI47_18925 at 22.841 kb on + strand, within IAI47_18925 at 22.842 kb on - strand, within IAI47_18925 at 22.842 kb on - strand, within IAI47_18925 at 22.842 kb on - strand, within IAI47_18925 at 22.845 kb on + strand, within IAI47_18925 at 22.845 kb on + strand, within IAI47_18925 at 22.845 kb on + strand, within IAI47_18925 at 22.845 kb on + strand, within IAI47_18925 at 22.846 kb on - strand, within IAI47_18925 at 22.846 kb on - strand, within IAI47_18925 at 22.918 kb on + strand, within IAI47_18925 at 22.919 kb on - strand, within IAI47_18925 at 22.925 kb on + strand, within IAI47_18925 at 22.926 kb on - strand, within IAI47_18925 at 22.926 kb on - strand, within IAI47_18925 at 22.926 kb on - strand, within IAI47_18925 at 23.132 kb on + strand at 23.132 kb on + strand at 23.132 kb on + strand at 23.149 kb on + strand at 23.197 kb on + strand at 23.203 kb on + strand at 23.203 kb on + strand at 23.203 kb on + strand at 23.204 kb on - strand at 23.204 kb on - strand at 23.204 kb on - strand at 23.204 kb on - strand at 23.204 kb on - strand at 23.204 kb on - strand at 23.204 kb on - strand at 23.204 kb on - strand at 23.318 kb on + strand, within IAI47_18930 at 23.318 kb on + strand, within IAI47_18930 at 23.319 kb on - strand, within IAI47_18930 at 23.319 kb on - strand, within IAI47_18930 at 23.468 kb on + strand, within IAI47_18930 at 23.468 kb on + strand, within IAI47_18930 at 23.469 kb on - strand, within IAI47_18930 at 23.469 kb on - strand, within IAI47_18930 at 23.469 kb on - strand, within IAI47_18930 at 23.485 kb on - strand, within IAI47_18930 at 23.485 kb on - strand, within IAI47_18930 at 23.485 kb on - strand, within IAI47_18930 at 23.531 kb on + strand at 23.573 kb on + strand at 23.574 kb on - strand at 23.593 kb on + strand, within IAI47_18935 at 23.594 kb on - strand, within IAI47_18935 at 23.607 kb on + strand, within IAI47_18935 at 23.607 kb on + strand, within IAI47_18935 at 23.607 kb on + strand, within IAI47_18935 at 23.607 kb on + strand, within IAI47_18935 at 23.608 kb on - strand, within IAI47_18935 at 23.608 kb on - strand, within IAI47_18935 at 23.608 kb on - strand, within IAI47_18935 at 23.695 kb on - strand, within IAI47_18935 at 23.701 kb on + strand, within IAI47_18935 at 23.708 kb on + strand, within IAI47_18935 at 23.708 kb on + strand, within IAI47_18935 at 23.709 kb on - strand, within IAI47_18935 at 23.709 kb on - strand, within IAI47_18935 at 23.709 kb on - strand, within IAI47_18935 at 23.795 kb on + strand, within IAI47_18935 at 23.795 kb on + strand, within IAI47_18935 at 23.860 kb on + strand, within IAI47_18935 at 23.860 kb on + strand, within IAI47_18935 at 23.860 kb on + strand, within IAI47_18935 at 23.861 kb on - strand, within IAI47_18935 at 23.925 kb on + strand at 23.942 kb on - strand at 23.949 kb on + strand at 23.965 kb on + strand at 23.965 kb on + strand at 23.965 kb on + strand at 23.965 kb on + strand at 23.965 kb on + strand at 23.966 kb on - strand at 23.970 kb on + strand at 23.971 kb on - strand at 23.971 kb on - strand at 23.971 kb on - strand at 24.046 kb on + strand, within IAI47_18940 at 24.046 kb on + strand, within IAI47_18940 at 24.046 kb on + strand, within IAI47_18940 at 24.046 kb on + strand, within IAI47_18940 at 24.047 kb on - strand, within IAI47_18940 at 24.047 kb on - strand, within IAI47_18940 at 24.047 kb on - strand, within IAI47_18940 at 24.091 kb on + strand, within IAI47_18940 at 24.091 kb on + strand, within IAI47_18940 at 24.092 kb on - strand, within IAI47_18940 at 24.092 kb on - strand, within IAI47_18940 at 24.103 kb on + strand, within IAI47_18940 at 24.103 kb on + strand, within IAI47_18940 at 24.104 kb on - strand, within IAI47_18940 at 24.104 kb on - strand, within IAI47_18940 at 24.104 kb on - strand, within IAI47_18940 at 24.126 kb on + strand, within IAI47_18940 at 24.127 kb on - strand, within IAI47_18940
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 2 remove 21,253 + IAI47_18915 0.89 -1.7 21,253 + IAI47_18915 0.89 -0.4 21,253 + IAI47_18915 0.89 -2.0 21,253 + IAI47_18915 0.89 -2.0 21,253 + IAI47_18915 0.89 +1.6 21,253 + IAI47_18915 0.89 -1.2 21,253 + IAI47_18915 0.89 -0.2 21,253 + IAI47_18915 0.89 -2.3 21,253 + IAI47_18915 0.89 -2.3 21,253 + IAI47_18915 0.89 +1.6 21,253 + IAI47_18915 0.89 +0.2 21,254 - IAI47_18915 0.89 +0.1 21,254 - IAI47_18915 0.89 +0.5 21,254 - IAI47_18915 0.89 +0.2 21,254 - IAI47_18915 0.89 +3.7 21,254 - IAI47_18915 0.89 +0.4 21,254 - IAI47_18915 0.89 +1.4 21,255 + IAI47_18915 0.90 +0.6 21,256 - IAI47_18915 0.90 +0.3 21,321 + +0.6 21,321 + -0.9 21,321 + +1.2 21,321 + -0.5 21,321 + +0.1 21,321 + +1.7 21,321 + +1.2 21,321 + +0.4 21,321 + -2.4 21,322 - -1.6 21,322 - +0.0 21,322 - -1.4 21,322 - -0.1 21,323 + +0.4 21,323 + +0.3 21,323 + +0.6 21,323 + -0.3 21,324 - -2.0 21,324 - -1.1 21,416 + -3.9 21,417 - +0.3 21,421 + +0.5 21,430 + +0.8 21,431 - +0.3 21,446 + +0.8 21,446 + -0.2 21,446 + -0.6 21,446 + -2.0 21,447 - +0.1 21,447 - +0.4 21,447 - -1.7 21,453 - -1.9 21,496 + -0.8 21,497 - +0.6 21,499 - +2.0 21,536 + +2.0 21,536 + -0.7 21,536 + +0.8 21,536 + -2.6 21,537 - -0.3 21,564 - -0.5 21,579 + +1.2 21,580 - -1.0 21,594 + -0.2 21,594 + -0.6 21,595 - -1.2 21,630 + +0.2 21,667 + -2.4 21,745 + +2.0 21,745 + -0.1 21,746 - -2.8 21,746 - -0.1 21,746 - -0.6 21,746 - -1.2 21,763 + IAI47_18920 0.10 +1.0 21,763 + IAI47_18920 0.10 +0.0 21,763 + IAI47_18920 0.10 -0.4 21,764 - IAI47_18920 0.10 -2.2 21,780 + IAI47_18920 0.13 -0.2 21,903 + IAI47_18920 0.34 -0.8 21,937 + IAI47_18920 0.40 +0.8 21,937 + IAI47_18920 0.40 +0.4 21,938 - IAI47_18920 0.40 -0.2 21,961 + IAI47_18920 0.44 +0.3 21,961 + IAI47_18920 0.44 -0.2 21,962 - IAI47_18920 0.44 -0.6 21,962 - IAI47_18920 0.44 +1.4 21,962 - IAI47_18920 0.44 +1.3 22,000 + IAI47_18920 0.50 +0.8 22,000 + IAI47_18920 0.50 -0.2 22,001 - IAI47_18920 0.51 +0.4 22,079 + IAI47_18920 0.64 +0.3 22,079 + IAI47_18920 0.64 -0.7 22,079 + IAI47_18920 0.64 -0.0 22,080 - IAI47_18920 0.64 +2.6 22,080 - IAI47_18920 0.64 +0.8 22,080 - IAI47_18920 0.64 -0.2 22,080 - IAI47_18920 0.64 +0.0 22,080 - IAI47_18920 0.64 -1.0 22,080 - IAI47_18920 0.64 +2.2 22,174 + IAI47_18920 0.80 -0.6 22,174 + IAI47_18920 0.80 +0.4 22,175 - IAI47_18920 0.80 -0.4 22,175 - IAI47_18920 0.80 +0.4 22,204 + IAI47_18920 0.85 -1.6 22,246 + +0.4 22,247 - -1.2 22,310 + +1.0 22,310 + +1.1 22,360 + IAI47_18925 0.13 +1.4 22,360 + IAI47_18925 0.13 -0.9 22,409 + IAI47_18925 0.18 +0.9 22,409 + IAI47_18925 0.18 +1.4 22,409 + IAI47_18925 0.18 -0.9 22,410 - IAI47_18925 0.18 -0.2 22,410 - IAI47_18925 0.18 +1.1 22,410 - IAI47_18925 0.18 -2.3 22,410 - IAI47_18925 0.18 +1.3 22,410 - IAI47_18925 0.18 +2.0 22,431 + IAI47_18925 0.21 +1.0 22,431 + IAI47_18925 0.21 +0.0 22,432 - IAI47_18925 0.21 -1.9 22,432 - IAI47_18925 0.21 -0.6 22,432 - IAI47_18925 0.21 -0.3 22,432 - IAI47_18925 0.21 +1.9 22,434 - IAI47_18925 0.21 +0.5 22,434 - IAI47_18925 0.21 +1.6 22,729 - IAI47_18925 0.54 -2.0 22,729 - IAI47_18925 0.54 +0.8 22,841 + IAI47_18925 0.67 +0.0 22,841 + IAI47_18925 0.67 +1.0 22,842 - IAI47_18925 0.67 +1.1 22,842 - IAI47_18925 0.67 +0.7 22,842 - IAI47_18925 0.67 -0.6 22,845 + IAI47_18925 0.67 -3.0 22,845 + IAI47_18925 0.67 +1.4 22,845 + IAI47_18925 0.67 -1.2 22,845 + IAI47_18925 0.67 -1.9 22,846 - IAI47_18925 0.67 +1.6 22,846 - IAI47_18925 0.67 +1.0 22,918 + IAI47_18925 0.75 -0.6 22,919 - IAI47_18925 0.75 +1.8 22,925 + IAI47_18925 0.76 -0.0 22,926 - IAI47_18925 0.76 -0.5 22,926 - IAI47_18925 0.76 +0.8 22,926 - IAI47_18925 0.76 -1.2 23,132 + -1.0 23,132 + -0.7 23,132 + -1.4 23,149 + +1.3 23,197 + -1.2 23,203 + +0.7 23,203 + -0.5 23,203 + +1.2 23,204 - +0.2 23,204 - +0.6 23,204 - +1.3 23,204 - +0.3 23,204 - -1.3 23,204 - -1.9 23,204 - +1.0 23,204 - -0.9 23,318 + IAI47_18930 0.27 +1.6 23,318 + IAI47_18930 0.27 -0.2 23,319 - IAI47_18930 0.27 +0.1 23,319 - IAI47_18930 0.27 -0.7 23,468 + IAI47_18930 0.76 +2.4 23,468 + IAI47_18930 0.76 -0.2 23,469 - IAI47_18930 0.76 +1.9 23,469 - IAI47_18930 0.76 +0.8 23,469 - IAI47_18930 0.76 -0.7 23,485 - IAI47_18930 0.82 +1.5 23,485 - IAI47_18930 0.82 +2.4 23,485 - IAI47_18930 0.82 -0.6 23,531 + +0.2 23,573 + +2.3 23,574 - -2.0 23,593 + IAI47_18935 0.14 -2.2 23,594 - IAI47_18935 0.14 +0.7 23,607 + IAI47_18935 0.17 -0.2 23,607 + IAI47_18935 0.17 +1.2 23,607 + IAI47_18935 0.17 -0.3 23,607 + IAI47_18935 0.17 +0.3 23,608 - IAI47_18935 0.17 -0.5 23,608 - IAI47_18935 0.17 +1.1 23,608 - IAI47_18935 0.17 +4.1 23,695 - IAI47_18935 0.40 -0.2 23,701 + IAI47_18935 0.41 -0.5 23,708 + IAI47_18935 0.43 -0.6 23,708 + IAI47_18935 0.43 +0.7 23,709 - IAI47_18935 0.43 +0.9 23,709 - IAI47_18935 0.43 +0.3 23,709 - IAI47_18935 0.43 +1.0 23,795 + IAI47_18935 0.65 -0.2 23,795 + IAI47_18935 0.65 -0.4 23,860 + IAI47_18935 0.82 -2.2 23,860 + IAI47_18935 0.82 -1.0 23,860 + IAI47_18935 0.82 +1.9 23,861 - IAI47_18935 0.82 -0.2 23,925 + -1.7 23,942 - -1.0 23,949 + -2.6 23,965 + +0.4 23,965 + +0.4 23,965 + +1.2 23,965 + +0.3 23,965 + +0.8 23,966 - +0.7 23,970 + +1.2 23,971 - -1.2 23,971 - -1.4 23,971 - +1.1 24,046 + IAI47_18940 0.23 -0.8 24,046 + IAI47_18940 0.23 +1.4 24,046 + IAI47_18940 0.23 +2.4 24,046 + IAI47_18940 0.23 -0.4 24,047 - IAI47_18940 0.23 +0.8 24,047 - IAI47_18940 0.23 -2.3 24,047 - IAI47_18940 0.23 -0.1 24,091 + IAI47_18940 0.31 +0.3 24,091 + IAI47_18940 0.31 -0.2 24,092 - IAI47_18940 0.31 -0.2 24,092 - IAI47_18940 0.31 -0.4 24,103 + IAI47_18940 0.34 +0.1 24,103 + IAI47_18940 0.34 -1.4 24,104 - IAI47_18940 0.34 -1.6 24,104 - IAI47_18940 0.34 +2.4 24,104 - IAI47_18940 0.34 -0.6 24,126 + IAI47_18940 0.38 +0.5 24,127 - IAI47_18940 0.38 -2.7
Or see this region's nucleotide sequence