Strain Fitness in Pantoea sp. MT58 around IAI47_16870

Experiment: Ying_sugar7 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 2
3,570,670	+		IAI47_16860	0.53	-1.4
3,570,671	-		IAI47_16860	0.53	-1.7
3,570,671	-		IAI47_16860	0.53	-1.0
3,570,671	-		IAI47_16860	0.53	-1.6
3,570,671	-		IAI47_16860	0.53	-1.2
3,570,766	+		IAI47_16860	0.63	-2.3
3,570,766	+		IAI47_16860	0.63	-1.2
3,570,766	+		IAI47_16860	0.63	-0.7
3,570,766	+		IAI47_16860	0.63	-0.7
3,570,766	+		IAI47_16860	0.63	+0.6
3,570,766	+		IAI47_16860	0.63	-2.4
3,570,766	+		IAI47_16860	0.63	-3.4
3,570,766	+		IAI47_16860	0.63	-0.4
3,570,766	+		IAI47_16860	0.63	-2.4
3,570,766	+		IAI47_16860	0.63	-2.5
3,570,767	-		IAI47_16860	0.63	-2.9
3,570,767	-		IAI47_16860	0.63	-2.4
3,570,767	-		IAI47_16860	0.63	-1.4
3,570,767	-		IAI47_16860	0.63	-1.0
3,570,767	-		IAI47_16860	0.63	-0.7
3,570,767	-		IAI47_16860	0.63	-0.4
3,570,767	-		IAI47_16860	0.63	-3.3
3,570,767	-		IAI47_16860	0.63	-1.4
3,570,767	-		IAI47_16860	0.63	-3.4
3,570,768	+		IAI47_16860	0.63	-1.2
3,570,768	+		IAI47_16860	0.63	-0.7
3,570,768	+		IAI47_16860	0.63	-2.0
3,570,768	+		IAI47_16860	0.63	-2.2
3,570,768	+		IAI47_16860	0.63	-1.0
3,570,768	+		IAI47_16860	0.63	-1.6
3,570,768	+		IAI47_16860	0.63	-1.0
3,570,768	+		IAI47_16860	0.63	-1.2
3,570,768	+		IAI47_16860	0.63	-1.9
3,570,768	+		IAI47_16860	0.63	+0.0
3,570,769	-		IAI47_16860	0.63	-2.8
3,570,769	-		IAI47_16860	0.63	-0.3
3,570,769	-		IAI47_16860	0.63	-2.0
3,570,769	-		IAI47_16860	0.63	-2.0
3,570,769	-		IAI47_16860	0.63	-0.4
3,570,769	-		IAI47_16860	0.63	-4.3
3,570,769	-		IAI47_16860	0.63	-2.6
3,570,769	-		IAI47_16860	0.63	-3.1
3,570,769	-		IAI47_16860	0.63	-4.3
3,570,769	-		IAI47_16860	0.63	-1.0
3,570,795	+		IAI47_16860	0.66	+0.6
3,570,795	+		IAI47_16860	0.66	-2.8
3,570,795	+		IAI47_16860	0.66	-0.4
3,570,795	+		IAI47_16860	0.66	-1.0
3,570,846	+		IAI47_16860	0.72	-1.0
3,570,853	+		IAI47_16860	0.72	-1.4
3,570,853	+		IAI47_16860	0.72	+0.6
3,570,853	+		IAI47_16860	0.72	-1.6
3,570,853	+		IAI47_16860	0.72	+0.0
3,570,854	-		IAI47_16860	0.73	-1.6
3,570,854	-		IAI47_16860	0.73	-2.2
3,570,854	-		IAI47_16860	0.73	-0.4
3,570,854	-		IAI47_16860	0.73	-2.0
3,570,854	-		IAI47_16860	0.73	-0.5
3,570,895	+		IAI47_16860	0.77	-1.2
3,570,895	+		IAI47_16860	0.77	-1.0
3,570,896	-		IAI47_16860	0.77	-2.5
3,570,905	+		IAI47_16860	0.78	-1.2
3,570,905	+		IAI47_16860	0.78	-2.4
3,570,905	+		IAI47_16860	0.78	-2.5
3,570,905	+		IAI47_16860	0.78	-1.7
3,570,905	+		IAI47_16860	0.78	-1.4
3,570,906	-		IAI47_16860	0.78	-1.0
3,570,906	-		IAI47_16860	0.78	-3.2
3,570,918	+		IAI47_16860	0.79	-0.9
3,570,918	+		IAI47_16860	0.79	-2.4
3,570,918	+		IAI47_16860	0.79	-4.2
3,570,918	+		IAI47_16860	0.79	-1.2
3,570,919	-		IAI47_16860	0.79	-0.4
3,570,919	-		IAI47_16860	0.79	+0.6
3,570,919	-		IAI47_16860	0.79	-2.5
3,571,022	-				-1.4
3,571,022	-				-0.7
3,571,030	+				-1.0
3,571,030	+				+0.0
3,571,031	-				-0.4
3,571,057	+				+1.6
3,571,057	+				-1.6
3,571,057	+				-1.7
3,571,057	+				-1.2
3,571,057	+				-3.3
3,571,057	+				-1.2
3,571,057	+				-1.0
3,571,057	+				-3.1
3,571,058	-				-2.4
3,571,058	-				-1.9
3,571,088	+				+0.0
3,571,089	-				-3.4
3,571,108	+				+2.1
3,571,108	+				+0.6
3,571,109	-				-1.2
3,571,109	-				-1.0
3,571,109	-				+0.6
3,571,202	+		IAI47_16865	0.17	-1.7
3,571,202	+		IAI47_16865	0.17	-1.0
3,571,202	+		IAI47_16865	0.17	+0.3
3,571,203	-		IAI47_16865	0.17	-1.9
3,571,203	-		IAI47_16865	0.17	+0.9
3,571,247	+		IAI47_16865	0.27	+0.0
3,571,248	-		IAI47_16865	0.27	+0.6
3,571,299	-		IAI47_16865	0.38	-0.3
3,571,299	-		IAI47_16865	0.38	-0.4
3,571,299	-		IAI47_16865	0.38	+1.1
3,571,299	-		IAI47_16865	0.38	-0.4
3,571,310	+		IAI47_16865	0.40	+0.1
3,571,350	+		IAI47_16865	0.49	-0.8
3,571,350	+		IAI47_16865	0.49	-1.7
3,571,350	+		IAI47_16865	0.49	-1.6
3,571,350	+		IAI47_16865	0.49	+0.3
3,571,350	+		IAI47_16865	0.49	-1.2
3,571,350	+		IAI47_16865	0.49	+1.4
3,571,350	+		IAI47_16865	0.49	+1.3
3,571,350	+		IAI47_16865	0.49	-0.3
3,571,350	+		IAI47_16865	0.49	-0.4
3,571,350	+		IAI47_16865	0.49	+0.5
3,571,351	-		IAI47_16865	0.49	-1.5
3,571,351	-		IAI47_16865	0.49	-0.4
3,571,351	-		IAI47_16865	0.49	+2.6
3,571,351	-		IAI47_16865	0.49	+2.6
3,571,351	-		IAI47_16865	0.49	-2.1
3,571,351	-		IAI47_16865	0.49	+1.6
3,571,386	+		IAI47_16865	0.57	+1.6
3,571,386	+		IAI47_16865	0.57	+0.7
3,571,387	-		IAI47_16865	0.57	-0.9
3,571,463	+		IAI47_16865	0.73	+0.2
3,571,463	+		IAI47_16865	0.73	+0.0
3,571,463	+		IAI47_16865	0.73	+0.7
3,571,463	+		IAI47_16865	0.73	+1.3
3,571,463	+		IAI47_16865	0.73	-2.1
3,571,463	+		IAI47_16865	0.73	-0.4
3,571,463	+		IAI47_16865	0.73	+0.0
3,571,464	-		IAI47_16865	0.74	-0.1
3,571,464	-		IAI47_16865	0.74	+0.5
3,571,496	+		IAI47_16865	0.80	+0.3
3,571,584	+				-1.2
3,571,584	+				+0.0
3,571,585	-				-0.9
3,571,585	-				-1.2
3,571,585	-				+0.6
3,571,603	+				+1.6
3,571,603	+				-0.2
3,571,603	+				+0.6
3,571,603	+				-0.5
3,571,603	+				-0.8
3,571,603	+				-1.3
3,571,603	+				+0.6
3,571,603	+				+1.6
3,571,603	+				+2.8
3,571,603	+				-1.3
3,571,603	+				+1.1
3,571,603	+				+0.0
3,571,604	-				+4.6
3,571,604	-				-1.0
3,571,604	-				-0.8
3,571,604	-				+1.0
3,571,604	-				+0.7
3,571,604	-				-2.2
3,571,604	-				+0.5
3,571,604	-				+1.2
3,571,604	-				-2.6
3,571,605	+				-0.5
3,571,605	+				+0.5
3,571,605	+				+0.6
3,571,606	-				-1.7
3,571,606	-				+1.6
3,571,606	-				-0.7
3,571,642	+				+0.8
3,571,642	+				-0.4
3,571,642	+				-2.1
3,571,642	+				-1.7
3,571,643	-				+0.3
3,571,676	+				-2.9
3,571,707	+		IAI47_16870	0.12	-2.1
3,571,707	+		IAI47_16870	0.12	+2.0
3,571,707	+		IAI47_16870	0.12	+0.6
3,571,707	+		IAI47_16870	0.12	-1.4
3,571,929	+		IAI47_16870	0.70	-1.9
3,571,929	+		IAI47_16870	0.70	-1.9
3,571,929	+		IAI47_16870	0.70	-0.7
3,571,929	+		IAI47_16870	0.70	-2.6
3,571,929	+		IAI47_16870	0.70	-3.1
3,571,929	+		IAI47_16870	0.70	-2.7
3,571,929	+		IAI47_16870	0.70	-3.9
3,571,929	+		IAI47_16870	0.70	-0.4
3,571,929	+		IAI47_16870	0.70	-0.7
3,571,929	+		IAI47_16870	0.70	-0.3
3,571,929	+		IAI47_16870	0.70	-2.1
3,571,929	+		IAI47_16870	0.70	-2.7
3,571,930	-		IAI47_16870	0.70	-2.1
3,571,930	-		IAI47_16870	0.70	-1.8
3,571,930	-		IAI47_16870	0.70	-2.5
3,571,930	-		IAI47_16870	0.70	-1.2
3,571,930	-		IAI47_16870	0.70	-2.7
3,571,930	-		IAI47_16870	0.70	-2.2
3,571,930	-		IAI47_16870	0.70	-1.7
3,571,930	-		IAI47_16870	0.70	-2.2
3,571,930	-		IAI47_16870	0.70	-3.8
3,571,930	-		IAI47_16870	0.70	-1.2
3,572,050	+				-0.6
3,572,050	+				+1.2
3,572,051	-				+0.7
3,572,096	+				+0.7
3,572,096	+				+1.0
3,572,097	-				+1.6
3,572,097	-				+1.6
3,572,103	+				-2.0
3,572,103	+				+1.6
3,572,103	+				-2.0
3,572,104	-				+0.0
3,572,104	-				+0.2
3,572,193	+				+0.4
3,572,205	+				-0.7
3,572,205	+				+0.4
3,572,205	+				+0.6
3,572,205	+				-1.0
3,572,206	-				+0.0
3,572,206	-				+0.9
3,572,206	-				-1.9
3,572,206	-				-1.2
3,572,206	-				-0.2
3,572,206	-				-1.4
3,572,206	-				+1.6
3,572,206	-				-0.5
3,572,206	-				+0.2
3,572,206	-				+0.4
3,572,207	+				-0.4
3,572,207	+				+2.2
3,572,207	+				+0.9
3,572,207	+				+0.3
3,572,207	+				+0.2
3,572,208	-				-0.2
3,572,208	-				-0.1
3,572,208	-				+1.1
3,572,208	-				+0.7
3,572,208	-				-0.5
3,572,220	+		IAI47_16875	0.10	+0.3
3,572,220	+		IAI47_16875	0.10	-0.7
3,572,221	-		IAI47_16875	0.11	-2.5
3,572,221	-		IAI47_16875	0.11	+0.0
3,572,221	-		IAI47_16875	0.11	-1.0
3,572,254	+		IAI47_16875	0.13	+3.4
3,572,255	-		IAI47_16875	0.13	-1.7
3,572,303	-		IAI47_16875	0.17	-2.2
3,572,362	+		IAI47_16875	0.22	-2.2
3,572,366	+		IAI47_16875	0.23	+2.1
3,572,366	+		IAI47_16875	0.23	+0.4
3,572,366	+		IAI47_16875	0.23	+4.2
3,572,366	+		IAI47_16875	0.23	+1.0
3,572,366	+		IAI47_16875	0.23	+1.6
3,572,366	+		IAI47_16875	0.23	-2.7
3,572,367	-		IAI47_16875	0.23	-1.9
3,572,367	-		IAI47_16875	0.23	-0.1
3,572,367	-		IAI47_16875	0.23	+2.1
3,572,367	-		IAI47_16875	0.23	+0.3
3,572,367	-		IAI47_16875	0.23	-1.1
3,572,436	+		IAI47_16875	0.29	+1.2
3,572,436	+		IAI47_16875	0.29	+1.0
3,572,437	-		IAI47_16875	0.29	-1.2
3,572,437	-		IAI47_16875	0.29	-3.1
3,572,656	+		IAI47_16875	0.47	-0.3
3,572,656	+		IAI47_16875	0.47	-1.4
3,572,657	-		IAI47_16875	0.47	+0.9
3,572,657	-		IAI47_16875	0.47	-3.1
3,572,686	+		IAI47_16875	0.50	+1.6
3,572,687	-		IAI47_16875	0.50	-3.2
3,572,687	-		IAI47_16875	0.50	+0.6
3,572,742	+		IAI47_16875	0.54	-0.6
3,572,771	+		IAI47_16875	0.57	-0.2
3,572,771	+		IAI47_16875	0.57	-2.3
3,572,771	+		IAI47_16875	0.57	+0.0
3,572,772	-		IAI47_16875	0.57	-0.2
3,572,772	-		IAI47_16875	0.57	+1.3
3,572,772	-		IAI47_16875	0.57	+0.0
3,572,806	-		IAI47_16875	0.60	+2.0
3,572,806	-		IAI47_16875	0.60	-1.2
3,572,806	-		IAI47_16875	0.60	-2.0
3,572,806	-		IAI47_16875	0.60	-0.2
3,572,806	-		IAI47_16875	0.60	+0.9
3,572,806	-		IAI47_16875	0.60	-1.2
3,572,930	+		IAI47_16875	0.70	+1.6
3,572,930	+		IAI47_16875	0.70	-0.2
3,572,930	+		IAI47_16875	0.70	-2.0
3,572,931	-		IAI47_16875	0.70	-2.2
3,572,931	-		IAI47_16875	0.70	-0.7
3,572,931	-		IAI47_16875	0.70	+1.6
3,572,946	-		IAI47_16875	0.71	+0.0
3,572,965	+		IAI47_16875	0.73	+1.2
3,572,973	+		IAI47_16875	0.74	+0.6
3,572,973	+		IAI47_16875	0.74	-0.8
3,572,974	-		IAI47_16875	0.74	+0.3
3,572,975	+		IAI47_16875	0.74	+0.5
3,572,975	+		IAI47_16875	0.74	-1.2
3,572,976	-		IAI47_16875	0.74	-1.6
3,573,033	+		IAI47_16875	0.79	+0.1
3,573,033	+		IAI47_16875	0.79	+0.4
3,573,033	+		IAI47_16875	0.79	-1.0
3,573,034	-		IAI47_16875	0.79	+0.6
3,573,034	-		IAI47_16875	0.79	+0.2
3,573,036	+		IAI47_16875	0.79	+0.0
3,573,037	-		IAI47_16875	0.79	+0.5