Strain Fitness in Pantoea sp. MT58 around IAI47_16835

Experiment: Ying_sugar7 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 2
3,563,733	+		IAI47_16830	0.65	-1.6
3,563,733	+		IAI47_16830	0.65	-2.6
3,563,733	+		IAI47_16830	0.65	-3.8
3,563,733	+		IAI47_16830	0.65	-2.0
3,563,733	+		IAI47_16830	0.65	-2.1
3,563,734	-		IAI47_16830	0.65	-2.0
3,563,763	+		IAI47_16830	0.68	-1.6
3,563,763	+		IAI47_16830	0.68	-0.4
3,563,764	-		IAI47_16830	0.68	-0.7
3,563,764	-		IAI47_16830	0.68	-2.1
3,563,767	+		IAI47_16830	0.68	-4.6
3,563,821	-		IAI47_16830	0.73	-2.6
3,563,840	-		IAI47_16830	0.75	-4.6
3,563,886	+		IAI47_16830	0.80	-1.2
3,563,887	-		IAI47_16830	0.80	-3.1
3,563,956	+		IAI47_16830	0.87	-1.4
3,563,956	+		IAI47_16830	0.87	-1.7
3,563,956	+		IAI47_16830	0.87	+0.0
3,563,956	+		IAI47_16830	0.87	-2.6
3,563,957	-		IAI47_16830	0.87	-2.2
3,563,957	-		IAI47_16830	0.87	-2.0
3,563,957	-		IAI47_16830	0.87	-2.4
3,564,052	-				-3.4
3,564,052	-				+0.0
3,564,088	+				-1.7
3,564,126	+				+1.5
3,564,126	+				-1.2
3,564,127	-				+0.1
3,564,127	-				+1.4
3,564,149	+				+0.6
3,564,149	+				-0.1
3,564,149	+				-1.2
3,564,150	-				+0.1
3,564,151	+				+0.8
3,564,151	+				+0.2
3,564,336	+				+0.0
3,564,481	+				+1.7
3,564,482	-				+0.1
3,564,482	-				-2.8
3,564,622	+				+0.3
3,564,622	+				+0.8
3,564,625	+				+0.5
3,564,625	+				+1.6
3,564,700	-				+1.1
3,564,731	+				-0.7
3,564,731	+				-2.1
3,564,731	+				-1.0
3,564,731	+				+0.2
3,564,732	-				-0.7
3,564,732	-				+0.3
3,564,732	-				+4.2
3,564,786	+				-2.6
3,564,786	+				+2.0
3,564,801	+				-1.9
3,564,801	+				+0.0
3,564,802	-				-0.6
3,564,802	-				-0.3
3,564,802	-				-0.9
3,564,883	+		IAI47_16835	0.13	-2.2
3,564,883	+		IAI47_16835	0.13	+2.2
3,564,884	-		IAI47_16835	0.14	-1.1
3,564,913	-		IAI47_16835	0.16	-1.6
3,564,913	-		IAI47_16835	0.16	-0.7
3,564,995	+		IAI47_16835	0.23	+1.2
3,564,995	+		IAI47_16835	0.23	+0.0
3,564,995	+		IAI47_16835	0.23	+0.2
3,564,995	+		IAI47_16835	0.23	-1.9
3,564,995	+		IAI47_16835	0.23	-0.7
3,564,996	-		IAI47_16835	0.23	-0.8
3,564,996	-		IAI47_16835	0.23	+0.0
3,564,996	-		IAI47_16835	0.23	+0.6
3,564,996	-		IAI47_16835	0.23	+2.3
3,564,997	+		IAI47_16835	0.23	-1.1
3,564,997	+		IAI47_16835	0.23	+0.2
3,564,997	+		IAI47_16835	0.23	+0.5
3,565,063	-		IAI47_16835	0.28	+0.0
3,565,091	+		IAI47_16835	0.30	-2.9
3,565,091	+		IAI47_16835	0.30	-0.1
3,565,091	+		IAI47_16835	0.30	+1.6
3,565,091	+		IAI47_16835	0.30	+1.3
3,565,092	-		IAI47_16835	0.31	+2.4
3,565,092	-		IAI47_16835	0.31	-0.4
3,565,120	+		IAI47_16835	0.33	+0.6
3,565,120	+		IAI47_16835	0.33	+0.3
3,565,120	+		IAI47_16835	0.33	-1.6
3,565,121	-		IAI47_16835	0.33	+0.0
3,565,121	-		IAI47_16835	0.33	-1.6
3,565,121	-		IAI47_16835	0.33	+1.6
3,565,208	+		IAI47_16835	0.40	-2.1
3,565,209	-		IAI47_16835	0.40	-0.3
3,565,209	-		IAI47_16835	0.40	+0.8
3,565,281	-		IAI47_16835	0.46	-2.0
3,565,315	+		IAI47_16835	0.49	-0.3
3,565,318	+		IAI47_16835	0.49	-1.2
3,565,318	+		IAI47_16835	0.49	+0.8
3,565,319	-		IAI47_16835	0.49	+0.9
3,565,319	-		IAI47_16835	0.49	-0.2
3,565,322	+		IAI47_16835	0.49	-0.2
3,565,322	+		IAI47_16835	0.49	-1.0
3,565,323	-		IAI47_16835	0.49	+1.6
3,565,323	-		IAI47_16835	0.49	+0.3
3,565,323	-		IAI47_16835	0.49	-2.5
3,565,346	+		IAI47_16835	0.51	-0.7
3,565,347	-		IAI47_16835	0.51	+1.2
3,565,347	-		IAI47_16835	0.51	-0.2
3,565,347	-		IAI47_16835	0.51	+0.8
3,565,347	-		IAI47_16835	0.51	-0.3
3,565,347	-		IAI47_16835	0.51	-1.7
3,565,347	-		IAI47_16835	0.51	-1.0
3,565,347	-		IAI47_16835	0.51	+1.5
3,565,402	-		IAI47_16835	0.56	-0.3
3,565,426	+		IAI47_16835	0.58	-0.7
3,565,471	+		IAI47_16835	0.62	-1.4
3,565,471	+		IAI47_16835	0.62	-0.3
3,565,472	-		IAI47_16835	0.62	-0.1
3,565,522	+		IAI47_16835	0.66	+2.0
3,565,522	+		IAI47_16835	0.66	-2.2
3,565,522	+		IAI47_16835	0.66	-0.3
3,565,522	+		IAI47_16835	0.66	-2.1
3,565,523	-		IAI47_16835	0.66	-1.6
3,565,523	-		IAI47_16835	0.66	-0.3
3,565,523	-		IAI47_16835	0.66	+0.0
3,565,523	-		IAI47_16835	0.66	-0.4
3,565,523	-		IAI47_16835	0.66	+0.2
3,565,523	-		IAI47_16835	0.66	-1.9
3,565,523	-		IAI47_16835	0.66	+0.4
3,565,523	-		IAI47_16835	0.66	-0.4
3,565,523	-		IAI47_16835	0.66	-1.2
3,565,558	+		IAI47_16835	0.69	-0.4
3,565,558	+		IAI47_16835	0.69	-0.3
3,565,558	+		IAI47_16835	0.69	+2.0
3,565,559	-		IAI47_16835	0.69	-0.4
3,565,559	-		IAI47_16835	0.69	-0.6
3,565,559	-		IAI47_16835	0.69	-1.7
3,565,559	-		IAI47_16835	0.69	-0.8
3,565,561	+		IAI47_16835	0.69	-1.7
3,565,561	+		IAI47_16835	0.69	-0.6
3,565,561	+		IAI47_16835	0.69	-1.2
3,565,561	+		IAI47_16835	0.69	-0.8
3,565,561	+		IAI47_16835	0.69	+1.6
3,565,562	-		IAI47_16835	0.69	+2.6
3,565,562	-		IAI47_16835	0.69	+0.0
3,565,562	-		IAI47_16835	0.69	+0.9
3,565,663	+		IAI47_16835	0.77	-2.6
3,565,663	+		IAI47_16835	0.77	-1.6
3,565,663	+		IAI47_16835	0.77	-3.2
3,565,664	-		IAI47_16835	0.77	+0.3
3,565,664	-		IAI47_16835	0.77	+0.0
3,565,664	-		IAI47_16835	0.77	+0.8
3,565,664	-		IAI47_16835	0.77	-0.7
3,565,664	-		IAI47_16835	0.77	+1.6
3,565,664	-		IAI47_16835	0.77	+0.4
3,565,664	-		IAI47_16835	0.77	-2.1
3,565,671	+		IAI47_16835	0.78	+0.5
3,565,672	+		IAI47_16835	0.78	-2.7
3,565,672	+		IAI47_16835	0.78	+0.9
3,565,672	+		IAI47_16835	0.78	-0.4
3,565,673	-		IAI47_16835	0.78	-3.3
3,565,810	+		IAI47_16835	0.89	-1.4
3,565,810	+		IAI47_16835	0.89	-1.7
3,565,810	+		IAI47_16835	0.89	-0.7
3,565,811	-		IAI47_16835	0.89	+2.6
3,565,811	-		IAI47_16835	0.89	-1.2
3,565,814	-		IAI47_16835	0.90	+2.6
3,565,814	-		IAI47_16835	0.90	-0.7
3,565,817	+		IAI47_16835	0.90	-1.2
3,565,817	+		IAI47_16835	0.90	+0.9
3,565,817	+		IAI47_16835	0.90	-1.7
3,565,817	+		IAI47_16835	0.90	+0.2
3,565,817	+		IAI47_16835	0.90	-2.4
3,565,817	+		IAI47_16835	0.90	-0.6
3,565,818	-				+0.9
3,565,818	-				+0.0
3,565,818	-				-1.9
3,565,818	-				-1.3
3,565,818	-				+0.3
3,565,819	+				+1.2
3,565,819	+				-1.4
3,565,820	-				-1.7
3,565,906	+				+0.4
3,565,906	+				+1.6
3,565,906	+				-1.0
3,565,906	+				+1.9
3,565,907	-				-0.3
3,565,907	-				-1.4
3,565,907	-				+1.5
3,565,907	-				+0.5
3,565,968	-				+0.2
3,565,968	-				-1.0
3,565,974	-				+1.2
3,566,043	+				+0.6
3,566,102	+		IAI47_16840	0.16	+1.6
3,566,103	-		IAI47_16840	0.16	+0.6
3,566,129	+		IAI47_16840	0.19	-0.7
3,566,130	-		IAI47_16840	0.19	-1.7
3,566,130	-		IAI47_16840	0.19	+1.1
3,566,130	-		IAI47_16840	0.19	-1.2
3,566,130	-		IAI47_16840	0.19	-0.9
3,566,130	-		IAI47_16840	0.19	+2.5
3,566,171	-		IAI47_16840	0.23	+1.9
3,566,181	+		IAI47_16840	0.25	-0.1
3,566,182	-		IAI47_16840	0.25	+0.6
3,566,265	+		IAI47_16840	0.34	+0.9
3,566,265	+		IAI47_16840	0.34	-0.7
3,566,266	-		IAI47_16840	0.34	+1.6
3,566,326	+		IAI47_16840	0.40	-0.6
3,566,326	+		IAI47_16840	0.40	+1.0
3,566,326	+		IAI47_16840	0.40	+0.6
3,566,326	+		IAI47_16840	0.40	+1.5
3,566,326	+		IAI47_16840	0.40	+1.0
3,566,327	-		IAI47_16840	0.40	+0.8
3,566,327	-		IAI47_16840	0.40	-0.3
3,566,327	-		IAI47_16840	0.40	+0.4
3,566,327	-		IAI47_16840	0.40	-1.0
3,566,327	-		IAI47_16840	0.40	-1.5
3,566,328	+		IAI47_16840	0.40	-1.9
3,566,328	+		IAI47_16840	0.40	+0.0
3,566,328	+		IAI47_16840	0.40	+0.0
3,566,329	-		IAI47_16840	0.41	+0.0
3,566,407	+		IAI47_16840	0.49	+1.8
3,566,407	+		IAI47_16840	0.49	+1.7
3,566,407	+		IAI47_16840	0.49	+0.0
3,566,450	+		IAI47_16840	0.54	+1.0
3,566,450	+		IAI47_16840	0.54	+3.3
3,566,451	-		IAI47_16840	0.54	+1.6
3,566,451	-		IAI47_16840	0.54	+1.6
3,566,451	-		IAI47_16840	0.54	-0.7
3,566,569	-		IAI47_16840	0.67	+0.5
3,566,574	+		IAI47_16840	0.67	+1.6
3,566,574	+		IAI47_16840	0.67	-0.3
3,566,574	+		IAI47_16840	0.67	-0.5
3,566,574	+		IAI47_16840	0.67	+0.9
3,566,574	+		IAI47_16840	0.67	-1.2
3,566,653	+		IAI47_16840	0.76	+2.8
3,566,718	+		IAI47_16840	0.83	-1.0
3,566,719	-		IAI47_16840	0.83	+0.4
3,566,841	+				+1.7
3,566,842	-				-0.0
3,566,853	+				+0.0
3,566,853	+				+1.3
3,566,854	-				-1.0
3,566,854	-				+0.7
3,566,854	-				-0.2
3,566,854	-				+0.2
3,566,854	-				+1.6
3,566,854	-				-2.0
3,566,854	-				+1.4
3,566,875	+				-1.1
3,566,876	-				-2.1
3,566,876	-				+0.2
3,566,876	-				-0.1
3,566,903	+				-2.6
3,566,903	+				+0.0
3,566,903	+				-0.0
3,566,904	-				+0.5
3,566,904	-				+1.8
3,566,904	-				+2.3
3,566,904	-				+0.6
3,566,904	-				+0.3
3,566,904	-				-2.6
3,566,907	+				-0.6
3,566,907	+				+0.3
3,566,908	-				-1.0
3,566,908	-				-1.2
3,566,908	-				+0.5