Strain Fitness in Pantoea sp. MT58 around IAI47_16370

Experiment: Ying_sugar7 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 2
3,469,540	+		IAI47_16360	0.19	+2.6
3,469,540	+		IAI47_16360	0.19	+0.9
3,469,540	+		IAI47_16360	0.19	+2.8
3,469,541	-		IAI47_16360	0.19	+0.0
3,469,541	-		IAI47_16360	0.19	-0.7
3,469,677	+		IAI47_16360	0.39	+1.9
3,469,677	+		IAI47_16360	0.39	+0.7
3,469,677	+		IAI47_16360	0.39	+1.1
3,469,678	-		IAI47_16360	0.40	+1.1
3,469,678	-		IAI47_16360	0.40	+1.3
3,469,678	-		IAI47_16360	0.40	-0.1
3,469,678	-		IAI47_16360	0.40	+0.0
3,469,751	+		IAI47_16360	0.50	-0.7
3,469,751	+		IAI47_16360	0.50	+2.0
3,469,751	+		IAI47_16360	0.50	+0.0
3,469,752	-		IAI47_16360	0.50	+0.4
3,469,752	-		IAI47_16360	0.50	-0.6
3,469,752	-		IAI47_16360	0.50	+2.2
3,469,902	-		IAI47_16360	0.72	-2.1
3,469,926	+		IAI47_16360	0.76	+1.7
3,469,959	+		IAI47_16360	0.81	+1.4
3,469,968	+		IAI47_16360	0.82	+0.9
3,469,969	-		IAI47_16360	0.82	+1.7
3,469,995	+		IAI47_16360	0.86	-2.0
3,469,995	+		IAI47_16360	0.86	-0.4
3,470,025	+				+1.6
3,470,026	-				+0.1
3,470,026	-				-0.1
3,470,026	-				+1.0
3,470,026	-				+1.0
3,470,026	-				-0.3
3,470,047	+				-0.4
3,470,080	+				-0.7
3,470,080	+				+0.6
3,470,080	+				-1.1
3,470,080	+				+0.2
3,470,080	+				+1.1
3,470,080	+				-1.0
3,470,081	-				+0.4
3,470,081	-				-2.1
3,470,090	+				-0.2
3,470,090	+				+0.2
3,470,090	+				+0.3
3,470,091	-				-0.1
3,470,091	-				-0.1
3,470,100	+				-1.0
3,470,101	-				+0.0
3,470,109	+				-0.3
3,470,160	+		IAI47_16365	0.12	-0.5
3,470,161	-		IAI47_16365	0.12	-1.2
3,470,161	-		IAI47_16365	0.12	-2.9
3,470,161	-		IAI47_16365	0.12	-0.7
3,470,161	-		IAI47_16365	0.12	-3.4
3,470,163	+		IAI47_16365	0.12	+0.8
3,470,163	+		IAI47_16365	0.12	-0.7
3,470,163	+		IAI47_16365	0.12	+0.0
3,470,163	+		IAI47_16365	0.12	+1.9
3,470,163	+		IAI47_16365	0.12	+0.4
3,470,163	+		IAI47_16365	0.12	-2.3
3,470,163	+		IAI47_16365	0.12	-0.4
3,470,163	+		IAI47_16365	0.12	-2.1
3,470,163	+		IAI47_16365	0.12	+0.6
3,470,163	+		IAI47_16365	0.12	+0.6
3,470,163	+		IAI47_16365	0.12	-1.2
3,470,163	+		IAI47_16365	0.12	+0.1
3,470,163	+		IAI47_16365	0.12	-2.1
3,470,163	+		IAI47_16365	0.12	+1.6
3,470,163	+		IAI47_16365	0.12	+0.6
3,470,163	+		IAI47_16365	0.12	+1.3
3,470,164	-		IAI47_16365	0.13	-1.4
3,470,164	-		IAI47_16365	0.13	+0.2
3,470,164	-		IAI47_16365	0.13	-1.2
3,470,164	-		IAI47_16365	0.13	+0.0
3,470,164	-		IAI47_16365	0.13	+2.4
3,470,164	-		IAI47_16365	0.13	+0.4
3,470,164	-		IAI47_16365	0.13	-1.0
3,470,164	-		IAI47_16365	0.13	-1.9
3,470,164	-		IAI47_16365	0.13	-1.2
3,470,205	+		IAI47_16365	0.22	+0.6
3,470,205	+		IAI47_16365	0.22	-1.2
3,470,205	+		IAI47_16365	0.22	+2.3
3,470,206	-		IAI47_16365	0.22	-0.1
3,470,347	+		IAI47_16365	0.54	-0.8
3,470,380	+		IAI47_16365	0.62	-1.2
3,470,380	+		IAI47_16365	0.62	+0.2
3,470,381	-		IAI47_16365	0.62	-0.3
3,470,381	-		IAI47_16365	0.62	-2.1
3,470,381	-		IAI47_16365	0.62	-0.4
3,470,420	+		IAI47_16365	0.71	-1.0
3,470,420	+		IAI47_16365	0.71	-0.7
3,470,420	+		IAI47_16365	0.71	+1.6
3,470,421	-		IAI47_16365	0.71	-0.8
3,470,421	-		IAI47_16365	0.71	+2.9
3,470,421	-		IAI47_16365	0.71	+0.0
3,470,425	+		IAI47_16365	0.72	+1.6
3,470,425	+		IAI47_16365	0.72	-0.4
3,470,429	-		IAI47_16365	0.73	+1.6
3,470,531	+				+0.0
3,470,531	+				+0.0
3,470,532	-				-0.4
3,470,532	-				-1.6
3,470,532	-				-2.6
3,470,532	-				-0.7
3,470,552	+				-0.7
3,470,552	+				-0.4
3,470,552	+				-0.4
3,470,552	+				+3.8
3,470,553	-				-2.0
3,470,553	-				+0.6
3,470,553	-				+1.4
3,470,553	-				+1.0
3,470,937	-				-0.4
3,470,937	-				+0.0
3,470,965	-				-0.8
3,470,965	-				+0.4
3,470,965	-				+0.3
3,470,965	-				+0.5
3,470,965	-				-1.9
3,470,965	-				-1.6
3,470,969	+				-0.4
3,470,970	-				+0.4
3,470,970	-				+2.6
3,470,970	-				-0.9
3,470,970	-				-0.4
3,471,003	+				+0.0
3,471,003	+				-0.7
3,471,003	+				+1.6
3,471,003	+				+0.6
3,471,004	-				+0.5
3,471,004	-				+1.4
3,471,004	-				-0.7
3,471,004	-				-1.4
3,471,004	-				-1.9
3,471,004	-				+0.8
3,471,004	-				+0.0
3,471,004	-				+1.3
3,471,004	-				+1.6
3,471,005	+				+2.2
3,471,005	+				+0.0
3,471,005	+				+2.0
3,471,005	+				+0.6
3,471,005	+				-0.3
3,471,005	+				-1.7
3,471,005	+				-1.3
3,471,006	-				-1.7
3,471,006	-				+0.6
3,471,006	-				+0.5
3,471,006	-				-0.3
3,471,023	+				-1.2
3,471,023	+				+0.0
3,471,023	+				+0.9
3,471,023	+				-1.9
3,471,034	+				-0.7
3,471,034	+				+1.8
3,471,034	+				+1.5
3,471,034	+				+2.5
3,471,034	+				-2.0
3,471,034	+				+0.4
3,471,034	+				+0.0
3,471,034	+				+1.3
3,471,034	+				-2.1
3,471,034	+				+1.1
3,471,034	+				+0.6
3,471,034	+				+3.2
3,471,034	+				+1.6
3,471,035	-				+0.6
3,471,035	-				-1.4
3,471,035	-				+2.3
3,471,048	+				-2.3
3,471,049	-				+1.4
3,471,107	+				-1.3
3,471,107	+				-1.0
3,471,108	-				-0.7
3,471,181	+		IAI47_16375	0.14	-2.1
3,471,181	+		IAI47_16375	0.14	+1.2
3,471,181	+		IAI47_16375	0.14	-0.7
3,471,181	+		IAI47_16375	0.14	-1.4
3,471,181	+		IAI47_16375	0.14	-1.4
3,471,181	+		IAI47_16375	0.14	-1.7
3,471,182	-		IAI47_16375	0.14	-0.7
3,471,182	-		IAI47_16375	0.14	+0.1
3,471,182	-		IAI47_16375	0.14	-0.3
3,471,182	-		IAI47_16375	0.14	+2.0
3,471,182	-		IAI47_16375	0.14	+0.8
3,471,182	-		IAI47_16375	0.14	-1.4
3,471,183	-		IAI47_16375	0.14	+3.2
3,471,211	-		IAI47_16375	0.17	+0.8
3,471,271	-		IAI47_16375	0.23	-2.0
3,471,280	+		IAI47_16375	0.24	+2.6
3,471,281	-		IAI47_16375	0.24	-0.4
3,471,281	-		IAI47_16375	0.24	-2.0
3,471,281	-		IAI47_16375	0.24	-0.2
3,471,297	+		IAI47_16375	0.25	-0.9
3,471,308	+		IAI47_16375	0.26	-0.7
3,471,308	+		IAI47_16375	0.26	-0.7
3,471,309	-		IAI47_16375	0.26	+0.2
3,471,309	-		IAI47_16375	0.26	-1.2
3,471,309	-		IAI47_16375	0.26	-1.2
3,471,309	-		IAI47_16375	0.26	+1.3
3,471,309	-		IAI47_16375	0.26	-1.6
3,471,309	-		IAI47_16375	0.26	+1.4
3,471,463	+		IAI47_16375	0.41	-1.0
3,471,463	+		IAI47_16375	0.41	-2.0
3,471,463	+		IAI47_16375	0.41	-1.2
3,471,463	+		IAI47_16375	0.41	+2.0
3,471,464	-		IAI47_16375	0.41	-0.4
3,471,464	-		IAI47_16375	0.41	-2.0
3,471,464	-		IAI47_16375	0.41	+1.3
3,471,464	-		IAI47_16375	0.41	+0.6
3,471,464	-		IAI47_16375	0.41	-0.9
3,471,464	-		IAI47_16375	0.41	-0.5
3,471,520	+		IAI47_16375	0.47	+1.3
3,471,520	+		IAI47_16375	0.47	-1.2
3,471,521	-		IAI47_16375	0.47	+1.6
3,471,613	-		IAI47_16375	0.56	+0.9
3,471,624	+		IAI47_16375	0.57	-0.1
3,471,624	+		IAI47_16375	0.57	+1.2
3,471,625	-		IAI47_16375	0.57	+0.9
3,471,625	-		IAI47_16375	0.57	-0.1
3,471,625	-		IAI47_16375	0.57	-1.2
3,471,625	-		IAI47_16375	0.57	+0.2
3,471,625	-		IAI47_16375	0.57	+1.0
3,471,642	+		IAI47_16375	0.59	+2.3
3,471,662	+		IAI47_16375	0.61	-1.1
3,471,662	+		IAI47_16375	0.61	+2.6
3,471,662	+		IAI47_16375	0.61	+2.5
3,471,662	+		IAI47_16375	0.61	+3.1
3,471,662	+		IAI47_16375	0.61	-0.2
3,471,663	-		IAI47_16375	0.61	+1.6
3,471,694	-				+0.6
3,471,698	+		IAI47_16375	0.64	-2.7
3,471,698	+		IAI47_16375	0.64	-0.4
3,471,698	+		IAI47_16375	0.64	-0.4
3,471,698	+		IAI47_16375	0.64	+0.1
3,471,698	+		IAI47_16375	0.64	-0.8
3,471,698	+		IAI47_16375	0.64	-0.7
3,471,699	-		IAI47_16375	0.64	+1.3
3,471,699	-		IAI47_16375	0.64	+0.5
3,471,831	+		IAI47_16375	0.77	+2.6
3,471,831	+		IAI47_16375	0.77	+2.2
3,471,831	+		IAI47_16375	0.77	+0.2
3,471,831	+		IAI47_16375	0.77	+0.3
3,471,831	+		IAI47_16375	0.77	-0.9
3,471,831	+		IAI47_16375	0.77	-0.9
3,471,831	+		IAI47_16375	0.77	+2.3
3,471,831	+		IAI47_16375	0.77	-0.5
3,471,831	+		IAI47_16375	0.77	-0.3
3,471,831	+		IAI47_16375	0.77	-0.4
3,471,832	-		IAI47_16375	0.77	+0.1
3,471,832	-		IAI47_16375	0.77	-0.2
3,471,832	-		IAI47_16375	0.77	-2.2
3,471,832	-		IAI47_16375	0.77	-0.1
3,471,832	-		IAI47_16375	0.77	+0.6
3,471,832	-		IAI47_16375	0.77	+1.5
3,471,832	-		IAI47_16375	0.77	+2.1
3,471,832	-		IAI47_16375	0.77	+0.3
3,471,832	-		IAI47_16375	0.77	+0.8
3,471,832	-		IAI47_16375	0.77	+0.6
3,471,832	-		IAI47_16375	0.77	-0.7
3,471,832	-		IAI47_16375	0.77	-1.2
3,471,905	+		IAI47_16375	0.84	-0.4
3,471,905	+		IAI47_16375	0.84	-1.6
3,471,906	-		IAI47_16375	0.84	+1.1
3,471,906	-		IAI47_16375	0.84	+0.3
3,471,906	-		IAI47_16375	0.84	+0.5
3,471,906	-		IAI47_16375	0.84	-1.1