Strain Fitness in Pantoea sp. MT58 around IAI47_15835

Experiment: Ying_sugar7 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 2
3,342,268	+				+0.7
3,342,268	+				-1.4
3,342,268	+				-2.0
3,342,269	-				+0.4
3,342,269	-				-0.2
3,342,299	+				-0.1
3,342,299	+				+0.6
3,342,300	-				+2.0
3,342,300	-				+1.8
3,342,317	+				+1.4
3,342,317	+				+1.5
3,342,317	+				+3.1
3,342,317	+				+2.6
3,342,318	-				+2.8
3,342,318	-				-1.7
3,342,318	-				+1.6
3,342,318	-				-2.0
3,342,318	-				-0.7
3,342,346	+				-0.4
3,342,346	+				-1.2
3,342,346	+				-2.2
3,342,347	-				+0.1
3,342,392	+				+0.4
3,342,392	+				-0.3
3,342,392	+				-1.0
3,342,392	+				+2.9
3,342,393	-				-0.3
3,342,393	-				+1.4
3,342,393	-				+0.7
3,342,393	-				+0.0
3,342,393	-				-1.9
3,342,395	+				-1.2
3,342,395	+				-1.4
3,342,396	-				+0.0
3,342,396	-				+0.3
3,342,396	-				+0.2
3,342,396	-				+1.3
3,342,396	-				+1.4
3,342,396	-				-0.2
3,342,396	-				-0.2
3,342,396	-				+3.5
3,342,396	-				-2.1
3,342,419	+		IAI47_15830	0.10	-1.4
3,342,515	-		IAI47_15830	0.20	+1.1
3,342,545	+		IAI47_15830	0.23	+3.5
3,342,545	+		IAI47_15830	0.23	+0.4
3,342,545	+		IAI47_15830	0.23	-0.1
3,342,545	+		IAI47_15830	0.23	+0.3
3,342,545	+		IAI47_15830	0.23	+0.7
3,342,545	+		IAI47_15830	0.23	-0.4
3,342,546	-		IAI47_15830	0.24	-0.9
3,342,546	-		IAI47_15830	0.24	+0.1
3,342,546	-		IAI47_15830	0.24	-1.4
3,342,546	-		IAI47_15830	0.24	+1.3
3,342,546	-		IAI47_15830	0.24	-0.3
3,342,565	+		IAI47_15830	0.26	+1.6
3,342,565	+		IAI47_15830	0.26	-0.3
3,342,566	-		IAI47_15830	0.26	-1.9
3,342,566	-		IAI47_15830	0.26	-1.9
3,342,566	-		IAI47_15830	0.26	-1.2
3,342,569	+		IAI47_15830	0.26	-0.5
3,342,569	+		IAI47_15830	0.26	-0.7
3,342,569	+		IAI47_15830	0.26	+0.7
3,342,569	+		IAI47_15830	0.26	+0.6
3,342,570	-		IAI47_15830	0.26	+0.4
3,342,570	-		IAI47_15830	0.26	+0.1
3,342,570	-		IAI47_15830	0.26	+0.3
3,342,570	-		IAI47_15830	0.26	+0.9
3,342,626	+		IAI47_15830	0.32	-0.7
3,342,626	+		IAI47_15830	0.32	-0.9
3,342,626	+		IAI47_15830	0.32	+0.9
3,342,626	+		IAI47_15830	0.32	-0.4
3,342,627	-		IAI47_15830	0.32	+3.9
3,342,627	-		IAI47_15830	0.32	-1.0
3,342,732	+		IAI47_15830	0.43	+0.3
3,342,732	+		IAI47_15830	0.43	+0.9
3,342,732	+		IAI47_15830	0.43	+0.2
3,342,732	+		IAI47_15830	0.43	+1.2
3,342,733	-		IAI47_15830	0.43	-1.4
3,342,733	-		IAI47_15830	0.43	-1.6
3,342,752	+		IAI47_15830	0.45	-0.4
3,342,752	+		IAI47_15830	0.45	-2.3
3,342,753	-		IAI47_15830	0.45	-1.1
3,342,753	-		IAI47_15830	0.45	-2.9
3,342,793	+		IAI47_15830	0.49	-2.1
3,342,794	-		IAI47_15830	0.49	-1.7
3,342,794	-		IAI47_15830	0.49	+0.3
3,342,794	-		IAI47_15830	0.49	-1.1
3,342,794	-		IAI47_15830	0.49	-2.2
3,342,794	-		IAI47_15830	0.49	+1.2
3,342,800	+		IAI47_15830	0.50	-1.2
3,342,800	+		IAI47_15830	0.50	-1.2
3,342,801	-		IAI47_15830	0.50	-1.0
3,342,801	-		IAI47_15830	0.50	-1.5
3,342,801	-		IAI47_15830	0.50	+0.4
3,342,801	-		IAI47_15830	0.50	+0.0
3,342,838	+		IAI47_15830	0.54	+0.8
3,342,838	+		IAI47_15830	0.54	+0.4
3,342,839	-		IAI47_15830	0.54	-0.7
3,342,866	+		IAI47_15830	0.57	-2.0
3,342,867	-		IAI47_15830	0.57	-0.9
3,342,944	+		IAI47_15830	0.65	-2.1
3,342,944	+		IAI47_15830	0.65	-0.6
3,342,945	-		IAI47_15830	0.65	+1.8
3,342,971	+		IAI47_15830	0.68	-1.2
3,342,971	+		IAI47_15830	0.68	+0.6
3,342,972	-		IAI47_15830	0.68	+1.6
3,342,985	-		IAI47_15830	0.69	+1.1
3,343,056	+		IAI47_15830	0.77	+1.3
3,343,056	+		IAI47_15830	0.77	-1.4
3,343,057	-		IAI47_15830	0.77	-0.4
3,343,057	-		IAI47_15830	0.77	+0.6
3,343,057	-		IAI47_15830	0.77	-2.2
3,343,057	-		IAI47_15830	0.77	-0.6
3,343,079	+		IAI47_15830	0.79	-0.7
3,343,079	+		IAI47_15830	0.79	-0.4
3,343,079	+		IAI47_15830	0.79	-1.9
3,343,079	+		IAI47_15830	0.79	-1.2
3,343,079	+		IAI47_15830	0.79	+1.6
3,343,080	-		IAI47_15830	0.79	+0.1
3,343,102	+		IAI47_15830	0.81	-1.9
3,343,137	-		IAI47_15830	0.85	-1.2
3,343,147	+		IAI47_15830	0.86	-1.0
3,343,151	+		IAI47_15830	0.87	+0.6
3,343,151	+		IAI47_15830	0.87	-0.7
3,343,152	-		IAI47_15830	0.87	-0.9
3,343,152	-		IAI47_15830	0.87	-0.4
3,343,152	-		IAI47_15830	0.87	+0.7
3,343,262	+				+0.9
3,343,262	+				+2.1
3,343,262	+				-2.1
3,343,263	-				+0.3
3,343,358	-		IAI47_15835	0.11	+0.6
3,343,358	-		IAI47_15835	0.11	+3.2
3,343,362	+		IAI47_15835	0.12	+0.3
3,343,362	+		IAI47_15835	0.12	+1.6
3,343,418	+		IAI47_15835	0.18	+0.6
3,343,419	-		IAI47_15835	0.18	+0.5
3,343,419	-		IAI47_15835	0.18	+1.0
3,343,494	-		IAI47_15835	0.27	+0.3
3,343,494	-		IAI47_15835	0.27	-0.6
3,343,578	+		IAI47_15835	0.37	-1.2
3,343,578	+		IAI47_15835	0.37	-0.6
3,343,578	+		IAI47_15835	0.37	-0.6
3,343,578	+		IAI47_15835	0.37	+0.0
3,343,578	+		IAI47_15835	0.37	+0.6
3,343,578	+		IAI47_15835	0.37	-1.1
3,343,579	-		IAI47_15835	0.37	-0.1
3,343,684	+		IAI47_15835	0.49	+1.3
3,343,685	+		IAI47_15835	0.50	+1.6
3,343,685	+		IAI47_15835	0.50	-0.7
3,343,685	+		IAI47_15835	0.50	-0.0
3,343,685	+		IAI47_15835	0.50	-0.2
3,343,685	+		IAI47_15835	0.50	-2.1
3,343,686	-		IAI47_15835	0.50	-0.7
3,343,686	-		IAI47_15835	0.50	-0.8
3,343,686	-		IAI47_15835	0.50	+1.3
3,343,753	+		IAI47_15835	0.58	-1.5
3,343,835	+		IAI47_15835	0.67	+0.0
3,343,835	+		IAI47_15835	0.67	+0.1
3,343,835	+		IAI47_15835	0.67	+0.2
3,343,835	+		IAI47_15835	0.67	+0.2
3,343,835	+		IAI47_15835	0.67	-0.1
3,343,835	+		IAI47_15835	0.67	-0.2
3,343,835	+		IAI47_15835	0.67	-1.1
3,343,835	+		IAI47_15835	0.67	-0.7
3,343,835	+		IAI47_15835	0.67	-0.1
3,343,835	+		IAI47_15835	0.67	+1.6
3,343,836	-		IAI47_15835	0.67	-0.7
3,343,836	-		IAI47_15835	0.67	+1.2
3,343,836	-		IAI47_15835	0.67	+0.1
3,343,836	-		IAI47_15835	0.67	+0.0
3,343,839	+		IAI47_15835	0.68	+2.2
3,343,839	+		IAI47_15835	0.68	+2.4
3,343,839	+		IAI47_15835	0.68	-0.1
3,343,839	+		IAI47_15835	0.68	+0.6
3,343,839	+		IAI47_15835	0.68	+1.3
3,343,839	+		IAI47_15835	0.68	+0.4
3,343,839	+		IAI47_15835	0.68	-0.4
3,343,839	+		IAI47_15835	0.68	+3.0
3,343,839	+		IAI47_15835	0.68	-1.5
3,343,839	+		IAI47_15835	0.68	+0.4
3,343,839	+		IAI47_15835	0.68	+0.0
3,343,839	+		IAI47_15835	0.68	+0.6
3,343,839	+		IAI47_15835	0.68	-0.4
3,343,839	+		IAI47_15835	0.68	-1.2
3,343,839	+		IAI47_15835	0.68	-1.9
3,343,839	+		IAI47_15835	0.68	-0.7
3,343,839	+		IAI47_15835	0.68	-1.4
3,343,839	+		IAI47_15835	0.68	+0.4
3,343,839	+		IAI47_15835	0.68	+0.2
3,343,839	+		IAI47_15835	0.68	-0.7
3,343,839	+		IAI47_15835	0.68	+0.5
3,343,839	+		IAI47_15835	0.68	+0.0
3,343,839	+		IAI47_15835	0.68	+1.1
3,343,839	+		IAI47_15835	0.68	+0.6
3,343,840	-		IAI47_15835	0.68	+0.1
3,343,840	-		IAI47_15835	0.68	-0.7
3,343,840	-		IAI47_15835	0.68	-1.0
3,343,840	-		IAI47_15835	0.68	+0.0
3,343,840	-		IAI47_15835	0.68	+0.1
3,343,840	-		IAI47_15835	0.68	+0.0
3,343,840	-		IAI47_15835	0.68	-2.1
3,343,840	-		IAI47_15835	0.68	+1.1
3,343,840	-		IAI47_15835	0.68	-0.2
3,343,840	-		IAI47_15835	0.68	-1.2
3,343,840	-		IAI47_15835	0.68	-1.2
3,343,840	-		IAI47_15835	0.68	-2.1
3,343,840	-		IAI47_15835	0.68	-1.8
3,343,840	-		IAI47_15835	0.68	+1.6
3,343,840	-		IAI47_15835	0.68	-1.0
3,343,840	-		IAI47_15835	0.68	+0.6
3,343,840	-		IAI47_15835	0.68	+0.5
3,343,840	-		IAI47_15835	0.68	+0.1
3,343,840	-		IAI47_15835	0.68	-0.7
3,343,840	-		IAI47_15835	0.68	+1.3
3,343,840	-		IAI47_15835	0.68	-1.6
3,343,840	-		IAI47_15835	0.68	+2.8
3,343,840	-		IAI47_15835	0.68	-0.1
3,343,840	-		IAI47_15835	0.68	-1.6
3,343,840	-		IAI47_15835	0.68	-1.4
3,343,840	-		IAI47_15835	0.68	-0.4
3,343,840	-		IAI47_15835	0.68	-1.1
3,343,840	-		IAI47_15835	0.68	+1.6
3,343,840	-		IAI47_15835	0.68	+2.8
3,343,844	+		IAI47_15835	0.68	-0.7
3,343,844	+		IAI47_15835	0.68	+0.3
3,343,845	-		IAI47_15835	0.68	+1.0
3,343,845	-		IAI47_15835	0.68	+0.7
3,343,845	-		IAI47_15835	0.68	-0.7
3,343,845	-		IAI47_15835	0.68	-0.7
3,343,909	+		IAI47_15835	0.76	-0.1
3,343,909	+		IAI47_15835	0.76	+2.0
3,343,909	+		IAI47_15835	0.76	+1.1
3,343,909	+		IAI47_15835	0.76	-1.0
3,343,909	+		IAI47_15835	0.76	+0.6
3,343,909	+		IAI47_15835	0.76	-1.3
3,343,909	+		IAI47_15835	0.76	+0.2
3,343,909	+		IAI47_15835	0.76	-1.4
3,343,909	+		IAI47_15835	0.76	+0.8
3,343,910	-		IAI47_15835	0.76	-1.2
3,343,910	-		IAI47_15835	0.76	-3.0
3,343,910	-		IAI47_15835	0.76	-0.5
3,343,910	-		IAI47_15835	0.76	-2.0
3,343,910	-		IAI47_15835	0.76	-1.6
3,343,910	-		IAI47_15835	0.76	+0.8
3,343,912	+		IAI47_15835	0.76	+0.0
3,343,913	-		IAI47_15835	0.76	+1.2
3,343,913	-		IAI47_15835	0.76	+0.6
3,343,989	+		IAI47_15835	0.85	+0.9
3,343,989	+		IAI47_15835	0.85	+1.9
3,343,990	-		IAI47_15835	0.85	-0.3
3,344,068	-				-1.4
3,344,068	-				+0.6
3,344,086	+				-1.2
3,344,087	-				-0.2
3,344,103	+				-1.7
3,344,103	+				+2.6
3,344,104	-				+2.4
3,344,104	-				+1.4
3,344,115	+				-0.0
3,344,163	+				-0.6
3,344,164	-				+0.0
3,344,164	-				-1.2
3,344,164	-				+0.8
3,344,164	-				+0.4
3,344,164	-				+4.2
3,344,166	+				+0.0
3,344,166	+				-0.4
3,344,166	+				+1.1
3,344,166	+				-1.5
3,344,166	+				-0.3
3,344,167	-				+1.4
3,344,204	+		IAI47_15840	0.13	-1.7
3,344,233	+		IAI47_15840	0.18	+1.2
3,344,233	+		IAI47_15840	0.18	-0.8
3,344,233	+		IAI47_15840	0.18	+0.4
3,344,234	-		IAI47_15840	0.18	+0.7
3,344,234	-		IAI47_15840	0.18	-0.6
3,344,234	-		IAI47_15840	0.18	+1.8
3,344,234	-		IAI47_15840	0.18	+0.1
3,344,234	-		IAI47_15840	0.18	-0.5
3,344,276	+		IAI47_15840	0.26	+1.3
3,344,277	-		IAI47_15840	0.26	+1.5
3,344,277	-		IAI47_15840	0.26	+0.8
3,344,309	-		IAI47_15840	0.32	+2.2
3,344,309	-		IAI47_15840	0.32	-2.2
3,344,310	+		IAI47_15840	0.32	-0.6
3,344,311	-		IAI47_15840	0.32	-1.0
3,344,345	+		IAI47_15840	0.39	-0.1
3,344,345	+		IAI47_15840	0.39	+0.7
3,344,346	-		IAI47_15840	0.39	+0.0
3,344,348	-		IAI47_15840	0.39	+1.2
3,344,348	-		IAI47_15840	0.39	-2.6
3,344,411	-		IAI47_15840	0.51	+1.3
3,344,411	-		IAI47_15840	0.51	-0.7
3,344,411	-		IAI47_15840	0.51	+1.8
3,344,424	+		IAI47_15840	0.53	+2.4
3,344,424	+		IAI47_15840	0.53	+0.3
3,344,424	+		IAI47_15840	0.53	-0.4
3,344,425	-		IAI47_15840	0.53	-0.3
3,344,425	-		IAI47_15840	0.53	-0.2
3,344,496	+		IAI47_15840	0.66	+2.6
3,344,496	+		IAI47_15840	0.66	-0.2
3,344,578	+		IAI47_15840	0.81	+1.6
3,344,578	+		IAI47_15840	0.81	-2.0
3,344,579	-		IAI47_15840	0.81	-1.6
3,344,683	+				-0.3
3,344,715	+				+3.0
3,344,715	+				+1.6
3,344,716	-				+0.6
3,344,716	-				+0.3
3,344,724	+				+0.8
3,344,724	+				+0.7
3,344,724	+				+2.1
3,344,725	-				-1.4
3,344,725	-				-0.9
3,344,725	-				-3.5
3,344,727	+				-1.9
3,344,745	+				+0.9
3,344,745	+				+0.0
3,344,745	+				+1.6
3,344,746	-				+0.0
3,344,746	-				+1.0
3,344,746	-				-1.6
3,344,746	-				-2.2
3,344,746	-				+1.1
3,344,746	-				+0.6
3,344,800	+				-1.2
3,344,836	+				+0.9
3,344,836	+				+1.2
3,344,836	+				-2.7
3,344,871	+				-1.6
3,344,872	-				-0.7
3,344,880	+				+0.0
3,344,880	+				-0.1
3,344,880	+				-1.4
3,344,880	+				+0.0
3,344,880	+				-1.2
3,344,880	+				+1.3
3,344,881	-				-2.0
3,344,881	-				+0.1
3,344,896	+				-1.0
3,344,972	+		IAI47_15845	0.10	-0.9
3,344,972	+		IAI47_15845	0.10	-0.6
3,344,972	+		IAI47_15845	0.10	-1.4
3,344,973	-		IAI47_15845	0.10	-2.2
3,344,973	-		IAI47_15845	0.10	-0.4
3,345,015	+		IAI47_15845	0.15	-2.1
3,345,015	+		IAI47_15845	0.15	+3.5
3,345,015	+		IAI47_15845	0.15	+0.8
3,345,015	+		IAI47_15845	0.15	+0.0
3,345,015	+		IAI47_15845	0.15	+1.9
3,345,015	+		IAI47_15845	0.15	+1.6
3,345,015	+		IAI47_15845	0.15	+0.6
3,345,016	-		IAI47_15845	0.15	+0.6
3,345,016	-		IAI47_15845	0.15	+0.0
3,345,016	-		IAI47_15845	0.15	-0.7
3,345,030	-		IAI47_15845	0.17	-1.9
3,345,030	-		IAI47_15845	0.17	+0.3