Strain Fitness in Pantoea sp. MT58 around IAI47_15210

Experiment: Ying_sugar7 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 2
3,208,166	+		IAI47_15205	0.12	+1.3
3,208,166	+		IAI47_15205	0.12	+2.7
3,208,166	+		IAI47_15205	0.12	+0.8
3,208,166	+		IAI47_15205	0.12	+0.2
3,208,166	+		IAI47_15205	0.12	+0.3
3,208,166	+		IAI47_15205	0.12	-2.9
3,208,166	+		IAI47_15205	0.12	+2.1
3,208,166	+		IAI47_15205	0.12	-0.7
3,208,166	+		IAI47_15205	0.12	+1.6
3,208,167	-		IAI47_15205	0.12	-1.3
3,208,167	-		IAI47_15205	0.12	+1.0
3,208,167	-		IAI47_15205	0.12	-0.2
3,208,167	-		IAI47_15205	0.12	-0.2
3,208,167	-		IAI47_15205	0.12	-0.7
3,208,167	-		IAI47_15205	0.12	+1.4
3,208,167	-		IAI47_15205	0.12	+1.3
3,208,460	+		IAI47_15205	0.41	-0.2
3,208,460	+		IAI47_15205	0.41	-1.9
3,208,460	+		IAI47_15205	0.41	-0.7
3,208,461	-		IAI47_15205	0.41	+0.6
3,208,464	-		IAI47_15205	0.41	+0.8
3,208,484	+		IAI47_15205	0.43	+0.7
3,208,484	+		IAI47_15205	0.43	+0.6
3,208,484	+		IAI47_15205	0.43	+0.7
3,208,484	+		IAI47_15205	0.43	-0.7
3,208,485	-		IAI47_15205	0.43	+4.1
3,208,485	-		IAI47_15205	0.43	-0.3
3,208,485	-		IAI47_15205	0.43	-2.7
3,208,562	+		IAI47_15205	0.51	+2.0
3,208,562	+		IAI47_15205	0.51	+1.2
3,208,562	+		IAI47_15205	0.51	+0.8
3,208,597	+		IAI47_15205	0.54	-1.3
3,208,597	+		IAI47_15205	0.54	+0.3
3,208,597	+		IAI47_15205	0.54	-2.4
3,208,648	-		IAI47_15205	0.59	+1.1
3,208,648	-		IAI47_15205	0.59	-2.8
3,208,648	-		IAI47_15205	0.59	+2.5
3,208,648	-		IAI47_15205	0.59	+0.7
3,208,648	-		IAI47_15205	0.59	+1.5
3,208,658	+		IAI47_15205	0.60	-0.9
3,208,699	+		IAI47_15205	0.64	+0.3
3,208,699	+		IAI47_15205	0.64	+3.4
3,208,699	+		IAI47_15205	0.64	+0.7
3,208,699	+		IAI47_15205	0.64	-1.8
3,208,700	-		IAI47_15205	0.64	+0.4
3,208,700	-		IAI47_15205	0.64	+2.9
3,208,754	+		IAI47_15205	0.70	+0.5
3,208,755	-		IAI47_15205	0.70	+0.4
3,208,767	+		IAI47_15205	0.71	-0.6
3,208,767	+		IAI47_15205	0.71	+0.1
3,208,767	+		IAI47_15205	0.71	+0.2
3,208,767	+		IAI47_15205	0.71	-0.2
3,208,767	+		IAI47_15205	0.71	-2.4
3,208,767	+		IAI47_15205	0.71	-0.2
3,208,767	+		IAI47_15205	0.71	-0.5
3,208,767	+		IAI47_15205	0.71	-0.2
3,208,767	+		IAI47_15205	0.71	+0.9
3,208,767	+		IAI47_15205	0.71	+0.8
3,208,767	+		IAI47_15205	0.71	+0.1
3,208,768	-		IAI47_15205	0.71	+0.7
3,208,768	-		IAI47_15205	0.71	+2.7
3,208,768	-		IAI47_15205	0.71	-2.2
3,208,768	-		IAI47_15205	0.71	-1.9
3,208,768	-		IAI47_15205	0.71	-2.5
3,208,792	-		IAI47_15205	0.73	+0.7
3,208,809	+		IAI47_15205	0.75	+1.4
3,208,827	-		IAI47_15205	0.77	-0.8
3,208,827	-		IAI47_15205	0.77	-0.3
3,208,953	+		IAI47_15205	0.89	+2.0
3,208,953	+		IAI47_15205	0.89	+1.0
3,208,954	-		IAI47_15205	0.89	+3.4
3,208,954	-		IAI47_15205	0.89	+0.5
3,208,954	-		IAI47_15205	0.89	-1.2
3,208,954	-		IAI47_15205	0.89	+0.7
3,209,062	-				+1.5
3,209,087	-				-1.0
3,209,119	+				+1.7
3,209,119	+				-1.7
3,209,119	+				+1.2
3,209,120	-				+1.3
3,209,134	+				-0.8
3,209,145	+				-1.0
3,209,145	+				-0.2
3,209,146	-				+1.2
3,209,150	+				-1.1
3,209,151	-				-0.5
3,209,151	-				-1.0
3,209,195	+		IAI47_15210	0.14	-2.0
3,209,196	-		IAI47_15210	0.14	+1.0
3,209,196	-		IAI47_15210	0.14	+0.7
3,209,229	-		IAI47_15210	0.20	+0.5
3,209,230	+		IAI47_15210	0.21	-1.2
3,209,369	+		IAI47_15210	0.46	+0.7
3,209,369	+		IAI47_15210	0.46	+0.6
3,209,369	+		IAI47_15210	0.46	+0.1
3,209,369	+		IAI47_15210	0.46	-1.2
3,209,369	+		IAI47_15210	0.46	-0.1
3,209,370	-		IAI47_15210	0.46	-1.4
3,209,370	-		IAI47_15210	0.46	+1.8
3,209,370	-		IAI47_15210	0.46	+0.1
3,209,414	+		IAI47_15210	0.55	-1.2
3,209,449	+		IAI47_15210	0.61	+0.3
3,209,450	-		IAI47_15210	0.61	+0.7
3,209,489	-		IAI47_15210	0.68	+0.1
3,209,489	-		IAI47_15210	0.68	+1.3
3,209,646	-				+0.7
3,209,663	+				-0.3
3,209,663	+				+0.1
3,209,664	-				+1.5
3,209,664	-				+0.7
3,209,664	-				-0.3
3,209,664	-				+4.5
3,209,679	+				-1.7
3,209,740	+		IAI47_15215	0.11	+0.1
3,209,740	+		IAI47_15215	0.11	-2.0
3,209,793	+		IAI47_15215	0.19	+0.1
3,209,793	+		IAI47_15215	0.19	+0.1
3,209,793	+		IAI47_15215	0.19	-1.2
3,209,793	+		IAI47_15215	0.19	-1.3
3,209,793	+		IAI47_15215	0.19	+1.0
3,209,793	+		IAI47_15215	0.19	-1.9
3,209,793	+		IAI47_15215	0.19	-0.3
3,209,844	+		IAI47_15215	0.27	+2.1
3,209,913	+		IAI47_15215	0.37	-0.1
3,209,913	+		IAI47_15215	0.37	+1.2
3,209,913	+		IAI47_15215	0.37	-1.2
3,209,913	+		IAI47_15215	0.37	+0.7
3,209,913	+		IAI47_15215	0.37	+0.1
3,209,914	-		IAI47_15215	0.37	-0.7
3,209,914	-		IAI47_15215	0.37	-0.2
3,209,914	-		IAI47_15215	0.37	-0.7
3,209,914	-		IAI47_15215	0.37	-0.7
3,209,914	-		IAI47_15215	0.37	+1.3
3,209,916	+		IAI47_15215	0.37	-1.5
3,209,916	+		IAI47_15215	0.37	+1.1
3,209,916	+		IAI47_15215	0.37	-0.5
3,209,917	-		IAI47_15215	0.37	-0.9
3,209,917	-		IAI47_15215	0.37	-1.9
3,209,917	-		IAI47_15215	0.37	-0.2
3,209,917	-		IAI47_15215	0.37	+1.7
3,209,917	-		IAI47_15215	0.37	+1.1
3,209,917	-		IAI47_15215	0.37	+2.4
3,209,917	-		IAI47_15215	0.37	+0.8
3,209,917	-		IAI47_15215	0.37	-1.2
3,209,941	+		IAI47_15215	0.41	+1.8
3,209,941	+		IAI47_15215	0.41	+0.1
3,209,975	+		IAI47_15215	0.46	-0.9
3,209,975	+		IAI47_15215	0.46	-1.6
3,209,976	-		IAI47_15215	0.46	+0.6
3,209,977	+		IAI47_15215	0.46	+0.1
3,209,977	+		IAI47_15215	0.46	+1.3
3,209,977	+		IAI47_15215	0.46	-0.3
3,209,977	+		IAI47_15215	0.46	-1.9
3,209,977	+		IAI47_15215	0.46	+0.2
3,209,977	+		IAI47_15215	0.46	-0.4
3,209,977	+		IAI47_15215	0.46	+0.4
3,209,977	+		IAI47_15215	0.46	+0.2
3,209,977	+		IAI47_15215	0.46	+0.3
3,209,977	+		IAI47_15215	0.46	+2.5
3,209,977	+		IAI47_15215	0.46	+0.7
3,209,978	-		IAI47_15215	0.46	+0.7
3,209,978	-		IAI47_15215	0.46	+0.2
3,209,978	-		IAI47_15215	0.46	+1.9
3,209,978	-		IAI47_15215	0.46	+0.3
3,209,978	-		IAI47_15215	0.46	+0.7
3,209,978	-		IAI47_15215	0.46	-0.5
3,209,978	-		IAI47_15215	0.46	-0.6
3,209,978	-		IAI47_15215	0.46	+0.1
3,209,978	-		IAI47_15215	0.46	+0.7
3,209,978	-		IAI47_15215	0.46	+1.4
3,209,978	-		IAI47_15215	0.46	-0.2
3,209,978	-		IAI47_15215	0.46	-0.8
3,209,978	-		IAI47_15215	0.46	-1.3
3,209,978	-		IAI47_15215	0.46	-1.8
3,209,981	+		IAI47_15215	0.47	-0.7
3,209,981	+		IAI47_15215	0.47	+1.4
3,209,981	+		IAI47_15215	0.47	+2.3
3,209,981	+		IAI47_15215	0.47	+1.8
3,209,981	+		IAI47_15215	0.47	-0.3
3,209,981	+		IAI47_15215	0.47	-0.9
3,209,981	+		IAI47_15215	0.47	-0.5
3,209,981	+		IAI47_15215	0.47	+1.7
3,209,981	+		IAI47_15215	0.47	+0.4
3,209,982	-		IAI47_15215	0.47	-0.7
3,209,982	-		IAI47_15215	0.47	+0.1
3,209,982	-		IAI47_15215	0.47	+0.1
3,209,982	-		IAI47_15215	0.47	+1.1
3,209,982	-		IAI47_15215	0.47	-0.3
3,209,982	-		IAI47_15215	0.47	-1.0
3,209,982	-		IAI47_15215	0.47	-0.9
3,209,982	-		IAI47_15215	0.47	+1.1
3,209,982	-		IAI47_15215	0.47	-2.5
3,209,982	-		IAI47_15215	0.47	-0.2
3,209,982	-		IAI47_15215	0.47	-1.2
3,209,982	-		IAI47_15215	0.47	-1.5
3,209,982	-		IAI47_15215	0.47	-0.0
3,209,982	-		IAI47_15215	0.47	-0.3
3,210,035	+		IAI47_15215	0.55	+0.2
3,210,035	+		IAI47_15215	0.55	+0.7
3,210,036	-		IAI47_15215	0.55	-0.7
3,210,049	-		IAI47_15215	0.57	-0.7
3,210,066	-		IAI47_15215	0.59	-0.5
3,210,066	-		IAI47_15215	0.59	-0.5
3,210,129	+		IAI47_15215	0.68	+1.2
3,210,130	-		IAI47_15215	0.68	-0.6
3,210,130	-		IAI47_15215	0.68	+0.7
3,210,144	+		IAI47_15215	0.70	-1.7
3,210,285	+				-1.3
3,210,285	+				-0.7
3,210,285	+				-1.8
3,210,285	+				-0.9
3,210,285	+				-0.6
3,210,285	+				+1.7
3,210,285	+				+1.5
3,210,286	-				+1.3
3,210,286	-				-0.2
3,210,286	-				-2.2
3,210,286	-				-1.7
3,210,286	-				-2.0
3,210,286	-				-0.9
3,210,286	-				+1.0
3,210,286	-				+0.5
3,210,286	-				-2.7
3,210,286	-				+1.2
3,210,286	-				+1.5
3,210,289	+				-2.7
3,210,289	+				-2.2
3,210,289	+				+0.4
3,210,289	+				+1.1
3,210,290	-				-1.2
3,210,290	-				-2.0
3,210,290	-				+0.4
3,210,290	-				+0.7
3,210,309	+				-0.7
3,210,309	+				+4.9
3,210,327	+				+0.3
3,210,328	-				-1.2
3,210,328	-				-0.3
3,210,380	-				-1.7
3,210,385	-				+0.2
3,210,444	+		IAI47_15220	0.17	+0.7
3,210,472	+		IAI47_15220	0.21	+0.4
3,210,496	+		IAI47_15220	0.25	-1.2
3,210,563	+		IAI47_15220	0.36	-0.9
3,210,575	+		IAI47_15220	0.38	+2.4
3,210,575	+		IAI47_15220	0.38	+0.1
3,210,575	+		IAI47_15220	0.38	+0.4
3,210,575	+		IAI47_15220	0.38	-1.7
3,210,575	+		IAI47_15220	0.38	+0.8
3,210,576	-		IAI47_15220	0.38	-1.3
3,210,576	-		IAI47_15220	0.38	-2.6
3,210,576	-		IAI47_15220	0.38	-1.8
3,210,607	+		IAI47_15220	0.43	+1.2
3,210,621	+		IAI47_15220	0.45	-2.5
3,210,622	-		IAI47_15220	0.46	+1.7
3,210,622	-		IAI47_15220	0.46	+1.7