Strain Fitness in Pantoea sp. MT58 around IAI47_13855

Experiment: Ying_sugar7 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 2
2,931,540	-		IAI47_13845	0.46	+0.9
2,931,628	+		IAI47_13845	0.58	+0.4
2,931,628	+		IAI47_13845	0.58	-1.9
2,931,628	+		IAI47_13845	0.58	-0.0
2,931,629	-		IAI47_13845	0.58	-0.3
2,931,714	+		IAI47_13845	0.69	-0.9
2,931,715	-		IAI47_13845	0.69	-2.8
2,931,724	+		IAI47_13845	0.70	+0.9
2,931,724	+		IAI47_13845	0.70	-0.9
2,931,725	-		IAI47_13845	0.71	-2.9
2,931,725	-		IAI47_13845	0.71	-1.6
2,931,728	+		IAI47_13845	0.71	+2.9
2,931,728	+		IAI47_13845	0.71	-0.4
2,931,728	+		IAI47_13845	0.71	-1.1
2,931,728	+		IAI47_13845	0.71	+0.1
2,931,728	+		IAI47_13845	0.71	-0.3
2,931,728	+		IAI47_13845	0.71	+1.1
2,931,729	-		IAI47_13845	0.71	+2.1
2,931,729	-		IAI47_13845	0.71	-2.6
2,931,729	-		IAI47_13845	0.71	+2.4
2,931,729	-		IAI47_13845	0.71	+0.1
2,931,729	-		IAI47_13845	0.71	-0.1
2,931,729	-		IAI47_13845	0.71	-1.3
2,931,729	-		IAI47_13845	0.71	-0.1
2,931,729	-		IAI47_13845	0.71	+0.2
2,931,784	+		IAI47_13845	0.78	+0.9
2,931,785	-		IAI47_13845	0.78	+1.1
2,931,785	-		IAI47_13845	0.78	-1.5
2,931,806	+		IAI47_13845	0.81	+1.0
2,931,806	+		IAI47_13845	0.81	+1.7
2,931,806	+		IAI47_13845	0.81	+1.7
2,931,807	-		IAI47_13845	0.81	+0.5
2,931,807	-		IAI47_13845	0.81	+1.1
2,931,835	-		IAI47_13845	0.85	+0.2
2,931,835	-		IAI47_13845	0.85	+1.3
2,931,947	+				+0.4
2,931,947	+				+0.3
2,931,947	+				+2.1
2,931,957	+				+0.1
2,931,957	+				+0.7
2,931,957	+				-0.9
2,931,957	+				+2.1
2,931,958	-				+0.1
2,931,958	-				-0.6
2,931,958	-				+0.1
2,931,958	-				-0.1
2,931,958	-				-0.2
2,932,004	+				-1.6
2,932,004	+				-0.3
2,932,004	+				-0.6
2,932,005	-				-1.6
2,932,005	-				-0.2
2,932,005	-				+0.7
2,932,005	-				-1.5
2,932,005	-				+2.2
2,932,059	+				-0.7
2,932,059	+				+1.1
2,932,059	+				-1.6
2,932,060	-				-0.6
2,932,064	+				-2.0
2,932,064	+				-0.7
2,932,065	-				+1.4
2,932,065	-				+0.7
2,932,066	+				-0.1
2,932,109	+				+0.5
2,932,109	+				+0.9
2,932,110	-				-1.8
2,932,112	+				+0.7
2,932,112	+				+0.1
2,932,112	+				+0.9
2,932,112	+				-1.1
2,932,112	+				-0.2
2,932,113	-				-2.3
2,932,243	+		IAI47_13850	0.45	-1.3
2,932,243	+		IAI47_13850	0.45	+0.7
2,932,244	-		IAI47_13850	0.46	+1.3
2,932,312	+		IAI47_13850	0.70	+1.1
2,932,312	+		IAI47_13850	0.70	-0.2
2,932,312	+		IAI47_13850	0.70	-0.3
2,932,312	+		IAI47_13850	0.70	-1.8
2,932,312	+		IAI47_13850	0.70	-1.5
2,932,313	-		IAI47_13850	0.71	+1.2
2,932,313	-		IAI47_13850	0.71	+0.1
2,932,315	+		IAI47_13850	0.71	-0.9
2,932,315	+		IAI47_13850	0.71	-0.6
2,932,316	-		IAI47_13850	0.72	+1.3
2,932,316	-		IAI47_13850	0.72	+0.1
2,932,316	-		IAI47_13850	0.72	+0.5
2,932,333	+		IAI47_13850	0.78	-0.8
2,932,433	-				+1.1
2,932,461	+				+2.7
2,932,461	+				+2.3
2,932,461	+				+1.7
2,932,464	+				+0.3
2,932,508	+				-2.4
2,933,096	+				-0.9
2,933,097	-				+1.2
2,933,110	-				+0.7
2,933,111	+				+0.9
2,933,117	+				+0.8
2,933,118	-				+2.9
2,933,118	-				+1.3
2,933,148	+				+0.7
2,933,148	+				+3.7
2,933,148	+				+1.7
2,933,149	-				+0.7
2,933,156	-				-0.9
2,933,156	-				+0.4
2,933,161	-				-0.0
2,933,181	+				+0.3
2,933,182	-				+0.5
2,933,202	+				+1.5
2,933,202	+				-0.9
2,933,203	-				-0.7
2,933,203	-				+1.3
2,933,203	-				-1.8
2,933,203	-				+1.9
2,933,211	+				-1.3
2,933,211	+				+2.0
2,933,212	-				+1.7
2,933,212	-				+0.5
2,933,316	+				-1.1
2,933,316	+				-1.0
2,933,316	+				+1.1
2,933,316	+				+1.8
2,933,318	+				-0.5
2,933,344	+				+1.3
2,933,344	+				-1.5
2,933,384	+				-1.8
2,933,384	+				+0.7
2,933,384	+				-0.7
2,933,384	+				+1.4
2,933,384	+				-0.9
2,933,847	-				-0.0
2,933,938	+				-2.0
2,933,954	+		IAI47_13865	0.10	+0.2
2,933,954	+		IAI47_13865	0.10	+0.4
2,933,960	+		IAI47_13865	0.12	+1.0
2,933,960	+		IAI47_13865	0.12	-1.8
2,933,960	+		IAI47_13865	0.12	+1.7
2,933,960	+		IAI47_13865	0.12	-1.0
2,933,960	+		IAI47_13865	0.12	-1.7
2,933,961	-		IAI47_13865	0.12	-1.5
2,933,961	-		IAI47_13865	0.12	-0.9
2,933,961	-		IAI47_13865	0.12	+0.1
2,933,961	-		IAI47_13865	0.12	-1.1
2,933,993	+		IAI47_13865	0.20	-1.2
2,933,993	+		IAI47_13865	0.20	-0.6
2,933,994	-		IAI47_13865	0.20	+0.5
2,933,994	-		IAI47_13865	0.20	-1.3
2,933,999	+		IAI47_13865	0.22	+0.1
2,933,999	+		IAI47_13865	0.22	+1.1
2,934,000	-		IAI47_13865	0.22	+1.3
2,934,000	-		IAI47_13865	0.22	+0.5
2,934,000	-		IAI47_13865	0.22	+0.7
2,934,047	+		IAI47_13865	0.34	-1.3
2,934,047	+		IAI47_13865	0.34	-0.1
2,934,047	+		IAI47_13865	0.34	-1.2
2,934,047	+		IAI47_13865	0.34	-1.1
2,934,047	+		IAI47_13865	0.34	-0.6
2,934,048	-		IAI47_13865	0.34	-0.2
2,934,048	-		IAI47_13865	0.34	+0.7
2,934,048	-		IAI47_13865	0.34	-0.5