Strain Fitness in Pantoea sp. MT58 around IAI47_13810

Experiment: Ying_sugar7 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 2
2,923,062	+		IAI47_13800	0.86	+0.3
2,923,068	+		IAI47_13800	0.86	-3.2
2,923,068	+		IAI47_13800	0.86	-1.1
2,923,069	-		IAI47_13800	0.87	+0.3
2,923,069	-		IAI47_13800	0.87	+0.1
2,923,093	+		IAI47_13800	0.89	-0.8
2,923,118	+				-1.1
2,923,138	+				+0.3
2,923,188	+				+1.7
2,923,193	+				+1.9
2,923,193	+				+1.1
2,923,193	+				+2.1
2,923,193	+				-0.8
2,923,193	+				+0.5
2,923,193	+				-2.0
2,923,193	+				+1.2
2,923,193	+				-2.8
2,923,193	+				+1.7
2,923,194	-				+1.7
2,923,194	-				-2.1
2,923,194	-				+0.6
2,923,194	-				-0.9
2,923,327	-		IAI47_13805	0.21	+1.2
2,923,327	-		IAI47_13805	0.21	+0.7
2,923,327	-		IAI47_13805	0.21	+1.7
2,923,470	+		IAI47_13805	0.43	+0.5
2,923,470	+		IAI47_13805	0.43	+0.1
2,923,470	+		IAI47_13805	0.43	+0.2
2,923,471	-		IAI47_13805	0.43	+1.5
2,923,563	+		IAI47_13805	0.57	-2.0
2,923,563	+		IAI47_13805	0.57	-2.2
2,923,564	-		IAI47_13805	0.57	-0.6
2,923,581	-		IAI47_13805	0.60	-0.6
2,923,598	+		IAI47_13805	0.63	-0.5
2,923,598	+		IAI47_13805	0.63	+0.2
2,923,598	+		IAI47_13805	0.63	-0.6
2,923,599	-		IAI47_13805	0.63	+1.2
2,923,744	+		IAI47_13805	0.85	-2.0
2,923,744	+		IAI47_13805	0.85	-0.9
2,923,744	+		IAI47_13805	0.85	-1.1
2,923,745	-		IAI47_13805	0.85	-1.3
2,923,745	-		IAI47_13805	0.85	-0.4
2,923,745	-		IAI47_13805	0.85	+1.7
2,923,745	-		IAI47_13805	0.85	+0.9
2,923,745	-		IAI47_13805	0.85	+0.3
2,923,756	+		IAI47_13805	0.87	-0.9
2,923,756	+		IAI47_13805	0.87	-1.5
2,923,756	+		IAI47_13805	0.87	+0.6
2,923,757	-		IAI47_13805	0.87	-1.6
2,923,757	-		IAI47_13805	0.87	+0.7
2,923,757	-		IAI47_13805	0.87	-0.6
2,923,821	-				+0.7
2,923,821	-				-0.9
2,923,824	+				-1.8
2,923,825	-				+0.7
2,923,848	+				-0.6
2,923,848	+				-0.9
2,923,913	+				-2.1
2,923,913	+				+0.5
2,923,913	+				+2.1
2,923,913	+				+0.9
2,923,914	-				-0.3
2,923,917	+				-2.4
2,923,917	+				+0.2
2,923,917	+				+2.7
2,923,918	-				-0.9
2,923,918	-				+0.7
2,923,921	+				-0.9
2,923,921	+				-0.6
2,923,921	+				-1.1
2,923,930	+				+0.8
2,923,930	+				+2.4
2,923,930	+				-0.1
2,923,930	+				+0.1
2,923,930	+				-0.9
2,923,930	+				+1.1
2,923,930	+				-0.6
2,923,931	-				-0.1
2,923,931	-				-0.2
2,923,931	-				-0.1
2,923,962	-				-0.3
2,923,964	-				+0.3
2,923,968	-				+0.7
2,923,968	-				+1.3
2,923,968	-				-0.9
2,923,968	-				-1.6
2,924,021	+				-0.6
2,924,021	+				-1.9
2,924,021	+				+1.0
2,924,021	+				+0.1
2,924,022	-				-2.4
2,924,024	-				+1.9
2,924,080	-		IAI47_13810	0.10	+1.6
2,924,177	+		IAI47_13810	0.23	-1.6
2,924,177	+		IAI47_13810	0.23	-1.9
2,924,177	+		IAI47_13810	0.23	-0.1
2,924,177	+		IAI47_13810	0.23	-0.2
2,924,177	+		IAI47_13810	0.23	-0.0
2,924,178	-		IAI47_13810	0.23	-2.0
2,924,178	-		IAI47_13810	0.23	+1.2
2,924,178	-		IAI47_13810	0.23	+0.7
2,924,179	+		IAI47_13810	0.24	+1.7
2,924,179	+		IAI47_13810	0.24	-2.7
2,924,179	+		IAI47_13810	0.24	-2.0
2,924,179	+		IAI47_13810	0.24	-2.2
2,924,179	+		IAI47_13810	0.24	+0.9
2,924,179	+		IAI47_13810	0.24	+1.1
2,924,179	+		IAI47_13810	0.24	+0.5
2,924,179	+		IAI47_13810	0.24	-0.3
2,924,179	+		IAI47_13810	0.24	+2.4
2,924,179	+		IAI47_13810	0.24	-0.9
2,924,179	+		IAI47_13810	0.24	-0.4
2,924,179	+		IAI47_13810	0.24	-0.6
2,924,179	+		IAI47_13810	0.24	-1.1
2,924,179	+		IAI47_13810	0.24	+0.4
2,924,180	-		IAI47_13810	0.24	-0.8
2,924,180	-		IAI47_13810	0.24	+0.4
2,924,180	-		IAI47_13810	0.24	-0.2
2,924,180	-		IAI47_13810	0.24	+0.1
2,924,180	-		IAI47_13810	0.24	+1.1
2,924,180	-		IAI47_13810	0.24	-0.5
2,924,180	-		IAI47_13810	0.24	-1.6
2,924,180	-		IAI47_13810	0.24	-0.5
2,924,180	-		IAI47_13810	0.24	+1.4
2,924,180	-		IAI47_13810	0.24	+1.3
2,924,180	-		IAI47_13810	0.24	+0.1
2,924,180	-		IAI47_13810	0.24	+2.2
2,924,180	-		IAI47_13810	0.24	+0.6
2,924,180	-		IAI47_13810	0.24	-1.6
2,924,180	-		IAI47_13810	0.24	-0.6
2,924,180	-		IAI47_13810	0.24	-1.1
2,924,180	-		IAI47_13810	0.24	+0.7
2,924,180	-		IAI47_13810	0.24	+0.7
2,924,180	-		IAI47_13810	0.24	-0.4
2,924,247	-		IAI47_13810	0.33	-3.1
2,924,388	+		IAI47_13810	0.52	-1.3
2,924,388	+		IAI47_13810	0.52	+1.4
2,924,388	+		IAI47_13810	0.52	+0.7
2,924,389	-		IAI47_13810	0.52	+2.7
2,924,396	+		IAI47_13810	0.53	+2.7
2,924,396	+		IAI47_13810	0.53	-1.6
2,924,397	-		IAI47_13810	0.53	+0.5
2,924,467	+		IAI47_13810	0.62	-0.3
2,924,467	+		IAI47_13810	0.62	+0.7
2,924,468	-		IAI47_13810	0.62	-1.5
2,924,468	-		IAI47_13810	0.62	+2.0
2,924,468	-		IAI47_13810	0.62	-2.0
2,924,474	+		IAI47_13810	0.63	-0.8
2,924,474	+		IAI47_13810	0.63	-1.5
2,924,474	+		IAI47_13810	0.63	+1.3
2,924,474	+		IAI47_13810	0.63	+0.8
2,924,475	-		IAI47_13810	0.63	+1.5
2,924,477	+		IAI47_13810	0.64	-0.5
2,924,477	+		IAI47_13810	0.64	+0.7
2,924,477	+		IAI47_13810	0.64	-0.6
2,924,477	+		IAI47_13810	0.64	-1.5
2,924,477	+		IAI47_13810	0.64	-0.1
2,924,477	+		IAI47_13810	0.64	+0.5
2,924,478	-		IAI47_13810	0.64	+0.9
2,924,478	-		IAI47_13810	0.64	+1.1
2,924,478	-		IAI47_13810	0.64	+1.2
2,924,478	-		IAI47_13810	0.64	-1.3
2,924,478	-		IAI47_13810	0.64	-1.8
2,924,478	-		IAI47_13810	0.64	-0.3
2,924,478	-		IAI47_13810	0.64	+0.1
2,924,516	+		IAI47_13810	0.69	+0.5
2,924,516	+		IAI47_13810	0.69	+2.4
2,924,516	+		IAI47_13810	0.69	+1.2
2,924,517	-		IAI47_13810	0.69	+0.4
2,924,517	-		IAI47_13810	0.69	+3.3
2,924,517	-		IAI47_13810	0.69	+0.3
2,924,517	-		IAI47_13810	0.69	+1.9
2,924,517	-		IAI47_13810	0.69	-2.6
2,924,517	-		IAI47_13810	0.69	+0.1
2,924,522	+		IAI47_13810	0.70	+1.1
2,924,522	+		IAI47_13810	0.70	+1.4
2,924,523	-		IAI47_13810	0.70	-0.6
2,924,551	+		IAI47_13810	0.74	-2.3
2,924,552	-		IAI47_13810	0.74	-1.4
2,924,567	+		IAI47_13810	0.76	-1.1
2,924,567	+		IAI47_13810	0.76	+0.7
2,924,568	-		IAI47_13810	0.76	-0.0
2,924,568	-		IAI47_13810	0.76	+0.1
2,924,634	-		IAI47_13810	0.85	-0.9
2,924,683	+				-0.9
2,924,799	+				+0.1
2,924,799	+				-0.5
2,924,799	+				-1.6
2,924,799	+				+0.7
2,924,800	-				+1.1
2,924,800	-				-0.8
2,924,800	-				-0.3
2,924,800	-				+0.7
2,924,800	-				-0.8
2,924,800	-				+2.0
2,924,800	-				+0.6
2,924,800	-				+1.2
2,924,800	-				-1.1
2,924,800	-				-1.8
2,924,822	+				+0.5
2,924,822	+				-0.4
2,924,823	-				-0.6
2,924,894	+				+1.2
2,924,929	+		IAI47_13815	0.11	+2.1
2,924,929	+		IAI47_13815	0.11	-0.1
2,924,984	+		IAI47_13815	0.15	-0.2
2,924,984	+		IAI47_13815	0.15	-2.0
2,924,998	+		IAI47_13815	0.16	-2.2
2,925,083	+		IAI47_13815	0.22	-2.0
2,925,083	+		IAI47_13815	0.22	+0.3
2,925,084	-		IAI47_13815	0.22	-0.9
2,925,089	-		IAI47_13815	0.23	+2.6
2,925,257	+		IAI47_13815	0.34	+0.8
2,925,374	+		IAI47_13815	0.43	-1.9
2,925,375	-		IAI47_13815	0.43	-0.5
2,925,463	+		IAI47_13815	0.49	-1.8
2,925,550	-		IAI47_13815	0.55	+1.2
2,925,614	-		IAI47_13815	0.60	+0.1
2,925,614	-		IAI47_13815	0.60	+0.7
2,925,722	+		IAI47_13815	0.67	-2.4
2,925,732	-		IAI47_13815	0.68	+0.1
2,925,740	+		IAI47_13815	0.68	-0.3
2,925,740	+		IAI47_13815	0.68	+2.4
2,925,741	-		IAI47_13815	0.68	-0.2
2,925,742	+		IAI47_13815	0.68	+0.1
2,925,742	+		IAI47_13815	0.68	+0.9
2,925,742	+		IAI47_13815	0.68	+0.6
2,925,742	+		IAI47_13815	0.68	-0.6
2,925,742	+		IAI47_13815	0.68	+0.4
2,925,742	+		IAI47_13815	0.68	+1.5
2,925,742	+		IAI47_13815	0.68	-1.3
2,925,742	+		IAI47_13815	0.68	-0.9
2,925,742	+		IAI47_13815	0.68	+0.5
2,925,742	+		IAI47_13815	0.68	+0.3
2,925,742	+		IAI47_13815	0.68	-0.6
2,925,742	+		IAI47_13815	0.68	+1.5
2,925,743	-		IAI47_13815	0.69	-0.9
2,925,743	-		IAI47_13815	0.69	-1.5
2,925,743	-		IAI47_13815	0.69	-2.5
2,925,743	-		IAI47_13815	0.69	+0.5