Strain Fitness in Pantoea sp. MT58 around IAI47_13155

Experiment: Ying_sugar7 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 2
2,780,753	-		IAI47_13150	0.48	+2.0
2,780,753	-		IAI47_13150	0.48	+1.4
2,780,753	-		IAI47_13150	0.48	-0.4
2,780,759	-		IAI47_13150	0.49	+0.2
2,780,780	+		IAI47_13150	0.50	-1.4
2,780,780	+		IAI47_13150	0.50	+0.4
2,780,780	+		IAI47_13150	0.50	-0.4
2,780,781	-		IAI47_13150	0.50	-0.7
2,780,781	-		IAI47_13150	0.50	+0.8
2,780,781	-		IAI47_13150	0.50	+1.9
2,780,781	-		IAI47_13150	0.50	-0.1
2,780,813	-		IAI47_13150	0.52	+1.4
2,780,854	+		IAI47_13150	0.55	+1.3
2,780,854	+		IAI47_13150	0.55	+0.1
2,780,854	+		IAI47_13150	0.55	-1.5
2,780,854	+		IAI47_13150	0.55	+2.0
2,780,855	-		IAI47_13150	0.55	-2.6
2,780,855	-		IAI47_13150	0.55	-0.1
2,780,855	-		IAI47_13150	0.55	-0.3
2,780,855	-		IAI47_13150	0.55	-0.4
2,780,855	-		IAI47_13150	0.55	+0.1
2,780,855	-		IAI47_13150	0.55	-0.6
2,780,855	-		IAI47_13150	0.55	+2.9
2,780,856	+		IAI47_13150	0.55	+0.2
2,780,856	+		IAI47_13150	0.55	-0.7
2,780,856	+		IAI47_13150	0.55	+0.9
2,780,856	+		IAI47_13150	0.55	-1.5
2,780,856	+		IAI47_13150	0.55	+0.6
2,780,856	+		IAI47_13150	0.55	+0.6
2,780,856	+		IAI47_13150	0.55	+1.9
2,780,856	+		IAI47_13150	0.55	-0.9
2,780,856	+		IAI47_13150	0.55	-0.9
2,780,856	+		IAI47_13150	0.55	+0.3
2,780,857	-		IAI47_13150	0.55	-0.1
2,780,857	-		IAI47_13150	0.55	-0.5
2,780,857	-		IAI47_13150	0.55	+0.1
2,780,857	-		IAI47_13150	0.55	-0.2
2,780,857	-		IAI47_13150	0.55	-1.4
2,780,857	-		IAI47_13150	0.55	+2.1
2,780,857	-		IAI47_13150	0.55	-1.2
2,780,865	+		IAI47_13150	0.55	-2.3
2,780,865	+		IAI47_13150	0.55	-2.1
2,780,865	+		IAI47_13150	0.55	-0.4
2,780,869	+		IAI47_13150	0.56	-1.2
2,780,870	-		IAI47_13150	0.56	+1.8
2,780,878	-		IAI47_13150	0.56	-1.7
2,780,895	+		IAI47_13150	0.57	+1.4
2,780,926	+		IAI47_13150	0.59	+0.6
2,780,926	+		IAI47_13150	0.59	-2.6
2,780,927	-		IAI47_13150	0.59	+1.6
2,780,927	-		IAI47_13150	0.59	+1.0
2,780,927	-		IAI47_13150	0.59	+0.5
2,780,927	-		IAI47_13150	0.59	-0.7
2,780,927	-		IAI47_13150	0.59	+1.9
2,780,927	-		IAI47_13150	0.59	-2.4
2,780,927	-		IAI47_13150	0.59	+1.1
2,780,929	+		IAI47_13150	0.59	+0.3
2,780,930	-		IAI47_13150	0.60	-0.8
2,780,930	-		IAI47_13150	0.60	+0.2
2,780,956	+		IAI47_13150	0.61	-0.9
2,780,956	+		IAI47_13150	0.61	-1.8
2,780,957	-		IAI47_13150	0.61	-0.8
2,780,957	-		IAI47_13150	0.61	-1.7
2,780,957	-		IAI47_13150	0.61	-0.2
2,780,957	-		IAI47_13150	0.61	+0.1
2,781,042	-		IAI47_13150	0.67	+0.5
2,781,094	+		IAI47_13150	0.70	+0.6
2,781,094	+		IAI47_13150	0.70	-0.4
2,781,095	-		IAI47_13150	0.70	+0.2
2,781,095	-		IAI47_13150	0.70	-0.2
2,781,126	+		IAI47_13150	0.72	+0.9
2,781,161	+		IAI47_13150	0.74	-0.1
2,781,161	+		IAI47_13150	0.74	+0.9
2,781,187	+		IAI47_13150	0.76	-1.4
2,781,188	-		IAI47_13150	0.76	-1.2
2,781,188	-		IAI47_13150	0.76	+2.4
2,781,188	-		IAI47_13150	0.76	-1.4
2,781,188	-		IAI47_13150	0.76	+1.2
2,781,189	+		IAI47_13150	0.76	+0.3
2,781,189	+		IAI47_13150	0.76	-1.4
2,781,190	-		IAI47_13150	0.76	+0.4
2,781,190	-		IAI47_13150	0.76	+0.9
2,781,190	-		IAI47_13150	0.76	-1.9
2,781,208	-		IAI47_13150	0.77	+1.4
2,781,232	+		IAI47_13150	0.78	-1.4
2,781,232	+		IAI47_13150	0.78	-0.6
2,781,232	+		IAI47_13150	0.78	-2.5
2,781,232	+		IAI47_13150	0.78	-1.2
2,781,232	+		IAI47_13150	0.78	-0.4
2,781,232	+		IAI47_13150	0.78	-0.7
2,781,232	+		IAI47_13150	0.78	-1.4
2,781,233	-		IAI47_13150	0.79	-1.4
2,781,233	-		IAI47_13150	0.79	-0.2
2,781,233	-		IAI47_13150	0.79	-1.2
2,781,233	-		IAI47_13150	0.79	-1.5
2,781,233	-		IAI47_13150	0.79	-2.1
2,781,234	+		IAI47_13150	0.79	-0.4
2,781,235	-		IAI47_13150	0.79	+1.1
2,781,235	-		IAI47_13150	0.79	+0.8
2,781,235	-		IAI47_13150	0.79	-0.0
2,781,235	-		IAI47_13150	0.79	+1.1
2,781,267	+		IAI47_13150	0.81	+1.5
2,781,267	+		IAI47_13150	0.81	+2.4
2,781,267	+		IAI47_13150	0.81	+0.6
2,781,271	+		IAI47_13150	0.81	+0.1
2,781,271	+		IAI47_13150	0.81	-0.2
2,781,271	+		IAI47_13150	0.81	+1.3
2,781,272	-		IAI47_13150	0.81	+3.8
2,781,272	-		IAI47_13150	0.81	+0.2
2,781,272	-		IAI47_13150	0.81	+0.6
2,781,273	-		IAI47_13150	0.81	+1.6
2,781,299	+		IAI47_13150	0.83	+0.5
2,781,300	-		IAI47_13150	0.83	+0.2
2,781,320	+		IAI47_13150	0.84	+1.8
2,781,320	+		IAI47_13150	0.84	-2.1
2,781,320	+		IAI47_13150	0.84	+1.1
2,781,321	-		IAI47_13150	0.84	+1.2
2,781,321	-		IAI47_13150	0.84	-2.0
2,781,321	-		IAI47_13150	0.84	+0.0
2,781,321	-		IAI47_13150	0.84	+0.8
2,781,321	-		IAI47_13150	0.84	+0.0
2,781,321	-		IAI47_13150	0.84	+0.1
2,781,321	-		IAI47_13150	0.84	+1.2
2,781,321	-		IAI47_13150	0.84	-1.3
2,781,321	-		IAI47_13150	0.84	-1.5
2,781,332	+		IAI47_13150	0.85	+0.8
2,781,333	-		IAI47_13150	0.85	+0.6
2,781,374	-		IAI47_13150	0.87	-2.4
2,781,380	-		IAI47_13150	0.88	+0.8
2,781,388	+		IAI47_13150	0.88	-1.7
2,781,389	-		IAI47_13150	0.88	+1.2
2,781,389	-		IAI47_13150	0.88	+0.3
2,781,396	+		IAI47_13150	0.89	+1.8
2,781,396	+		IAI47_13150	0.89	-0.5
2,781,396	+		IAI47_13150	0.89	+1.2
2,781,397	-		IAI47_13150	0.89	+1.3
2,781,397	-		IAI47_13150	0.89	+0.7
2,781,486	+				+0.1
2,781,517	+				+1.2
2,781,517	+				-2.2
2,781,518	-				+0.7
2,781,518	-				-1.5
2,781,556	+				+2.4
2,781,556	+				-0.0
2,781,557	-				-1.4
2,781,557	-				+1.4
2,781,557	-				-0.7
2,781,557	-				+2.3
2,781,565	+				-1.4
2,781,565	+				+0.9
2,781,566	-				-1.2
2,781,569	+				+1.3
2,781,569	+				-1.4
2,781,620	+				+0.3
2,781,620	+				-0.4
2,781,620	+				-2.7
2,781,620	+				+0.2
2,781,620	+				+1.2
2,781,620	+				+1.6
2,781,620	+				-0.9
2,781,621	-				+0.1
2,781,682	-				-1.7
2,781,736	+				-0.6
2,781,736	+				+1.2
2,781,736	+				+1.6
2,781,736	+				+1.5
2,781,737	-				+1.0
2,781,737	-				-0.3
2,781,737	-				-1.4
2,781,737	-				+1.5
2,781,737	-				+0.9
2,781,737	-				-1.2
2,781,737	-				+0.3
2,781,737	-				+1.2
2,781,865	+		IAI47_13155	0.28	+0.6
2,781,866	-		IAI47_13155	0.28	-2.4
2,781,866	-		IAI47_13155	0.28	-1.5
2,781,928	-		IAI47_13155	0.44	-0.5
2,781,930	+		IAI47_13155	0.44	-2.6
2,782,051	-		IAI47_13155	0.74	-0.9
2,782,114	-				+2.1
2,782,114	-				-2.2
2,782,114	-				+0.6
2,782,114	-				+0.4
2,782,124	+				+0.9
2,782,125	-				-1.7
2,782,139	+				-0.7
2,782,140	-				-0.7
2,782,170	+				-2.4
2,782,170	+				-0.7
2,782,171	-				-0.9
2,782,181	-				+0.6
2,782,203	+				-2.4
2,782,207	+				-1.8
2,782,208	-				+0.8
2,782,240	+				+2.0
2,782,241	-				+0.6
2,782,247	-				+0.3
2,782,254	-				+1.5
2,782,278	+				-0.9
2,782,279	-				+0.1
2,782,281	+				+1.9
2,782,281	+				+1.6
2,782,284	+				-1.5
2,782,285	-				-0.7
2,782,322	-				+1.0
2,782,340	+				+0.2
2,782,372	+				+3.6
2,782,373	-				+2.7
2,782,373	-				+1.3
2,782,375	-				-0.2
2,782,415	-				-0.4
2,782,428	-				-0.7
2,782,428	-				+1.5
2,782,428	-				-1.1
2,782,437	+				+1.4
2,782,437	+				-0.8
2,782,437	+				-0.6
2,782,438	-				-1.8
2,782,452	-				-1.4
2,782,452	-				+1.4
2,782,452	-				+0.7
2,782,452	-				+3.2
2,782,533	+				+2.0
2,782,533	+				+1.8
2,782,533	+				+1.1
2,782,533	+				-1.2
2,782,533	+				+2.1
2,782,534	-				+1.0
2,782,537	+				-1.7
2,782,537	+				+2.2
2,782,537	+				+2.2
2,782,538	-				+0.4
2,782,538	-				+2.3
2,782,538	-				+0.6
2,782,538	-				+0.6
2,782,549	-				+1.3
2,782,551	+				+0.6
2,782,576	-				+1.9
2,782,634	-				+0.3
2,782,659	+				-1.1
2,782,659	+				-2.3
2,782,659	+				+0.4
2,782,659	+				+1.2
2,782,659	+				+0.8
2,782,665	+				+0.3
2,782,666	-				+0.8
2,782,709	-				+1.7
2,782,717	+				+0.5
2,782,727	+				+1.2
2,782,727	+				+0.9
2,782,728	-				-0.7
2,782,741	-				-1.7
2,782,741	-				+0.3
2,782,747	-				+1.6
2,782,747	-				-0.5
2,782,800	+				+1.1
2,782,800	+				+1.6
2,782,827	-				-1.2
2,782,827	-				+0.9
2,782,890	+				-2.8
2,782,890	+				+1.1
2,782,891	-				+0.4
2,782,891	-				+2.2
2,782,891	-				+1.3
2,782,895	+				-0.4
2,782,896	-				+1.8
2,782,924	-				-0.0
2,782,946	+				-0.1
2,782,951	+				-0.2
2,782,952	-				+1.5
2,782,960	+				-0.7
2,782,960	+				+1.1
2,782,973	+				+0.5
2,782,973	+				-0.0
2,782,974	-				+0.1
2,782,974	-				+0.8
2,783,013	+				+0.7
2,783,014	-				-1.5
2,783,039	+				-1.2
2,783,040	-				+3.0
2,783,070	+				+1.5
2,783,071	-				+1.3
2,783,071	-				-1.2
2,783,098	+				+0.6
2,783,098	+				+0.5
2,783,098	+				-0.4
2,783,099	-				-1.2
2,783,099	-				+1.6
2,783,100	+				-0.4
2,783,111	+				-0.4
2,783,112	-				-2.2