Strain Fitness in Pantoea sp. MT58 around IAI47_13135

Experiment: Ying_sugar7 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 2
2,775,267	-		IAI47_13130	0.48	-2.5
2,775,321	+		IAI47_13130	0.51	-0.2
2,775,327	-		IAI47_13130	0.51	+0.7
2,775,327	-		IAI47_13130	0.51	+0.4
2,775,437	+		IAI47_13130	0.57	+0.4
2,775,437	+		IAI47_13130	0.57	+2.4
2,775,437	+		IAI47_13130	0.57	-0.9
2,775,437	+		IAI47_13130	0.57	-0.4
2,775,437	+		IAI47_13130	0.57	+1.3
2,775,437	+		IAI47_13130	0.57	-0.6
2,775,438	-		IAI47_13130	0.57	+0.8
2,775,438	-		IAI47_13130	0.57	-1.5
2,775,438	-		IAI47_13130	0.57	-1.8
2,775,438	-		IAI47_13130	0.57	-1.4
2,775,438	-		IAI47_13130	0.57	+1.2
2,775,439	+		IAI47_13130	0.57	-0.2
2,775,440	-		IAI47_13130	0.57	-0.5
2,775,440	-		IAI47_13130	0.57	+0.6
2,775,489	+		IAI47_13130	0.60	+0.2
2,775,490	-		IAI47_13130	0.60	-1.2
2,775,502	+		IAI47_13130	0.60	-0.4
2,775,502	+		IAI47_13130	0.60	+1.2
2,775,502	+		IAI47_13130	0.60	+1.4
2,775,503	-		IAI47_13130	0.61	-0.9
2,775,545	+		IAI47_13130	0.63	+0.1
2,775,545	+		IAI47_13130	0.63	-0.2
2,775,557	+		IAI47_13130	0.63	-1.2
2,775,663	+		IAI47_13130	0.69	-0.7
2,775,745	-		IAI47_13130	0.74	+0.1
2,776,191	+				+1.6
2,776,215	+				-0.7
2,776,215	+				+1.4
2,776,216	-				+0.7
2,776,258	+				+0.1
2,776,258	+				+0.3
2,776,260	+				+0.1
2,776,260	+				+0.1
2,776,261	-				+1.9
2,776,303	+				+2.3
2,776,303	+				+1.0
2,776,303	+				+0.8
2,776,304	-				-0.0
2,776,304	-				+3.2
2,776,304	-				-0.6
2,776,319	+				+1.5
2,776,320	-				+1.6
2,776,406	+		IAI47_13135	0.17	+1.1
2,776,463	-		IAI47_13135	0.23	+0.1
2,776,463	-		IAI47_13135	0.23	+0.4
2,776,463	-		IAI47_13135	0.23	-1.4
2,776,463	-		IAI47_13135	0.23	+1.2
2,776,481	+		IAI47_13135	0.25	-0.7
2,776,482	-		IAI47_13135	0.25	+3.0
2,776,482	-		IAI47_13135	0.25	-1.4
2,776,482	-		IAI47_13135	0.25	+1.3
2,776,535	-		IAI47_13135	0.30	-2.5
2,776,535	-		IAI47_13135	0.30	+0.6
2,776,584	-		IAI47_13135	0.35	+1.2
2,776,584	-		IAI47_13135	0.35	-0.4
2,776,593	-		IAI47_13135	0.36	-2.4
2,776,607	+		IAI47_13135	0.38	-0.4
2,776,607	+		IAI47_13135	0.38	-0.4
2,776,607	+		IAI47_13135	0.38	-0.2
2,776,607	+		IAI47_13135	0.38	+0.6
2,776,607	+		IAI47_13135	0.38	+2.2
2,776,608	-		IAI47_13135	0.38	+0.4
2,776,608	-		IAI47_13135	0.38	-1.8
2,776,608	-		IAI47_13135	0.38	-0.7
2,776,777	+		IAI47_13135	0.55	+1.6
2,776,777	+		IAI47_13135	0.55	+1.8
2,776,777	+		IAI47_13135	0.55	+2.0
2,776,777	+		IAI47_13135	0.55	-1.8
2,776,778	-		IAI47_13135	0.56	-0.8
2,776,778	-		IAI47_13135	0.56	-1.2
2,776,778	-		IAI47_13135	0.56	-0.2
2,776,778	-		IAI47_13135	0.56	+2.1
2,776,778	-		IAI47_13135	0.56	-1.8
2,776,892	+		IAI47_13135	0.67	+0.9
2,776,934	+		IAI47_13135	0.72	+1.1
2,776,934	+		IAI47_13135	0.72	-0.2
2,776,934	+		IAI47_13135	0.72	+0.6
2,776,935	-		IAI47_13135	0.72	-0.9
2,776,935	-		IAI47_13135	0.72	-0.7
2,776,997	+		IAI47_13135	0.78	+1.9
2,777,079	+		IAI47_13135	0.87	+1.2
2,777,080	-		IAI47_13135	0.87	+0.6
2,777,080	-		IAI47_13135	0.87	+0.2
2,777,080	-		IAI47_13135	0.87	+0.1
2,777,097	-		IAI47_13135	0.89	-1.7
2,777,102	+		IAI47_13135	0.89	+1.6
2,777,103	-		IAI47_13135	0.89	+0.2
2,777,103	-		IAI47_13135	0.89	+0.6
2,777,103	-		IAI47_13135	0.89	+2.0
2,777,103	-		IAI47_13135	0.89	+1.6
2,777,109	+				+0.7
2,777,109	+				-1.7
2,777,123	-				+0.8
2,777,212	+				-1.5
2,777,249	-				-1.7
2,777,287	-				-2.7
2,777,287	-				-1.9
2,777,287	-				+0.9
2,777,298	+				+1.2
2,777,298	+				+0.5
2,777,298	+				-1.4
2,777,299	-				-1.2
2,777,299	-				+0.6
2,777,308	-				-1.5
2,777,332	-				-1.1
2,777,332	-				+0.6
2,777,333	+				-0.5
2,777,334	-				+2.3
2,777,334	-				-0.9
2,777,368	+				-0.4
2,777,368	+				-2.8
2,777,411	+				+0.2
2,777,423	+				+1.0
2,777,423	+				+1.4
2,777,423	+				+1.4
2,777,423	+				-1.1
2,777,423	+				-0.5
2,777,423	+				+0.3
2,777,423	+				-0.7
2,777,423	+				+0.3
2,777,424	-				-0.1
2,777,424	-				+1.0
2,777,424	-				-0.7
2,777,424	-				+1.4
2,777,426	+				+1.9
2,777,426	+				+0.1
2,777,426	+				-0.4
2,777,426	+				+1.5
2,777,427	-				-1.8
2,777,443	-				-0.3
2,777,443	-				+0.5
2,777,443	-				-0.3
2,777,460	+				-0.1
2,777,472	+				-0.4
2,777,625	+		IAI47_13140	0.13	-0.7
2,777,625	+		IAI47_13140	0.13	-1.8
2,777,626	-		IAI47_13140	0.13	-1.2
2,777,626	-		IAI47_13140	0.13	-1.4
2,777,644	+		IAI47_13140	0.15	-0.4
2,777,988	-		IAI47_13140	0.43	+1.2
2,777,988	-		IAI47_13140	0.43	-1.1
2,777,988	-		IAI47_13140	0.43	-1.6
2,777,991	+		IAI47_13140	0.43	-2.4
2,777,991	+		IAI47_13140	0.43	-2.9
2,777,991	+		IAI47_13140	0.43	+3.2
2,777,991	+		IAI47_13140	0.43	+0.8
2,777,992	-		IAI47_13140	0.43	-0.5
2,778,006	+		IAI47_13140	0.44	+0.3
2,778,068	-		IAI47_13140	0.49	+1.1
2,778,068	-		IAI47_13140	0.49	+0.1
2,778,076	-		IAI47_13140	0.50	-0.6
2,778,105	+		IAI47_13140	0.52	-0.1
2,778,105	+		IAI47_13140	0.52	-0.9
2,778,105	+		IAI47_13140	0.52	-1.0
2,778,105	+		IAI47_13140	0.52	+0.1
2,778,105	+		IAI47_13140	0.52	-1.5
2,778,105	+		IAI47_13140	0.52	-0.2
2,778,105	+		IAI47_13140	0.52	+0.9
2,778,106	-		IAI47_13140	0.52	+0.4
2,778,106	-		IAI47_13140	0.52	+1.2
2,778,106	-		IAI47_13140	0.52	-1.7
2,778,106	-		IAI47_13140	0.52	+1.4
2,778,106	-		IAI47_13140	0.52	-0.1
2,778,106	-		IAI47_13140	0.52	+0.6