Strain Fitness in Pantoea sp. MT58 around IAI47_12725

Experiment: Ying_sugar7 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 2
2,677,136	-				+3.3
2,677,143	-				+0.6
2,677,143	-				+2.1
2,677,154	+				+1.6
2,677,154	+				+1.0
2,677,155	-				-0.4
2,677,155	-				+0.4
2,677,155	-				+1.0
2,677,155	-				+0.6
2,677,189	-				-0.3
2,677,189	-				-1.4
2,677,194	+				+1.4
2,677,194	+				-1.8
2,677,195	-				+0.2
2,677,252	+				+0.6
2,677,252	+				+0.6
2,677,252	+				+0.6
2,677,253	-				-0.4
2,677,253	-				+0.0
2,677,253	-				+0.2
2,677,253	-				-0.7
2,677,253	-				-0.8
2,677,253	-				+0.5
2,677,279	+				-2.6
2,677,279	+				+0.2
2,677,279	+				-0.3
2,677,279	+				+1.6
2,677,279	+				-1.2
2,677,280	-				-0.5
2,677,280	-				-0.6
2,677,301	+				-0.9
2,677,301	+				+0.6
2,677,302	-				+0.6
2,677,359	-				-1.7
2,677,396	+				+0.2
2,677,396	+				+0.3
2,677,397	-				+0.3
2,677,402	-				-0.2
2,677,402	-				+0.0
2,677,419	+				+0.3
2,677,419	+				+0.8
2,677,420	-				+0.1
2,677,420	-				+0.4
2,677,420	-				+1.4
2,677,448	+				+1.5
2,677,448	+				-0.0
2,677,448	+				-1.2
2,677,448	+				+1.8
2,677,449	-				-0.1
2,677,449	-				-0.2
2,677,467	+				+0.3
2,677,467	+				-2.0
2,677,467	+				+0.4
2,677,468	-				+1.4
2,677,468	-				+0.6
2,677,468	-				-0.6
2,677,468	-				+3.2
2,677,468	-				+0.0
2,677,468	-				+0.1
2,677,488	+				-1.7
2,677,488	+				-0.7
2,677,488	+				-1.4
2,677,488	+				+0.5
2,677,488	+				+1.2
2,677,489	-				+0.4
2,677,489	-				-0.2
2,677,489	-				+0.2
2,677,489	-				+0.5
2,677,489	-				-0.7
2,677,489	-				+0.3
2,677,501	+				+1.0
2,677,501	+				-0.8
2,677,502	-				-1.0
2,677,502	-				+0.5
2,677,513	+				+0.7
2,677,513	+				+0.6
2,677,514	-				+2.2
2,677,548	+				-1.0
2,677,582	-				-0.8
2,677,584	+				+0.2
2,677,584	+				-0.1
2,677,584	+				-1.2
2,677,584	+				-1.6
2,677,584	+				-2.3
2,677,584	+				+0.6
2,677,584	+				-0.8
2,677,585	-				-1.6
2,677,585	-				+2.0
2,677,585	-				-2.9
2,677,585	-				+0.7
2,677,628	+				+0.2
2,677,628	+				+1.2
2,677,628	+				+0.0
2,677,686	+		IAI47_12720	0.20	+0.7
2,677,687	-		IAI47_12720	0.21	+0.1
2,677,687	-		IAI47_12720	0.21	+1.9
2,677,801	+		IAI47_12720	0.41	-1.0
2,677,801	+		IAI47_12720	0.41	+1.2
2,677,801	+		IAI47_12720	0.41	-0.5
2,677,801	+		IAI47_12720	0.41	+0.6
2,677,802	-		IAI47_12720	0.41	-0.4
2,677,802	-		IAI47_12720	0.41	-0.7
2,677,802	-		IAI47_12720	0.41	-0.6
2,677,803	+		IAI47_12720	0.42	+0.3
2,677,803	+		IAI47_12720	0.42	+1.1
2,677,804	-		IAI47_12720	0.42	+1.3
2,677,804	-		IAI47_12720	0.42	-0.0
2,677,847	+		IAI47_12720	0.50	+1.6
2,677,928	-		IAI47_12720	0.64	-1.2
2,677,928	-		IAI47_12720	0.64	+1.8
2,677,947	+		IAI47_12720	0.68	+0.3
2,677,947	+		IAI47_12720	0.68	-0.4
2,677,956	-		IAI47_12720	0.69	+0.9
2,677,984	+		IAI47_12720	0.74	+1.3
2,677,985	-		IAI47_12720	0.75	-0.4
2,678,005	-		IAI47_12720	0.78	+2.3
2,678,012	-		IAI47_12720	0.80	-0.4
2,678,013	-		IAI47_12720	0.80	+0.0
2,678,120	+				+0.3
2,678,120	+				+1.6
2,678,120	+				-0.6
2,678,120	+				+1.6
2,678,121	-				+0.4
2,678,121	-				-0.6
2,678,121	-				+1.9
2,678,122	+				+0.5
2,678,122	+				+2.6
2,678,122	+				+1.2
2,678,123	-				+0.0
2,678,123	-				-0.7
2,678,123	-				+0.1
2,678,123	-				-0.5
2,678,146	+				-1.4
2,678,146	+				-1.2
2,678,146	+				+0.7
2,678,147	-				-0.4
2,678,147	-				-0.3
2,678,176	+				+0.0
2,678,176	+				-0.3
2,678,176	+				-1.6
2,678,176	+				-1.0
2,678,177	-				+2.0
2,678,177	-				+1.1
2,678,177	-				-1.2
2,678,177	-				+1.0
2,678,281	+		IAI47_12725	0.15	-2.3
2,678,281	+		IAI47_12725	0.15	+1.5
2,678,282	-		IAI47_12725	0.15	-1.6
2,678,282	-		IAI47_12725	0.15	+1.6
2,678,312	+		IAI47_12725	0.18	-0.1
2,678,312	+		IAI47_12725	0.18	+0.1
2,678,312	+		IAI47_12725	0.18	+1.8
2,678,312	+		IAI47_12725	0.18	+0.4
2,678,313	-		IAI47_12725	0.19	-0.6
2,678,369	+		IAI47_12725	0.24	-0.5
2,678,369	+		IAI47_12725	0.24	+0.5
2,678,369	+		IAI47_12725	0.24	+1.6
2,678,370	-		IAI47_12725	0.25	-1.0
2,678,370	-		IAI47_12725	0.25	+0.8
2,678,370	-		IAI47_12725	0.25	+0.3
2,678,370	-		IAI47_12725	0.25	+0.6
2,678,436	+		IAI47_12725	0.31	-1.6
2,678,437	-		IAI47_12725	0.32	-1.3
2,678,566	+		IAI47_12725	0.45	-1.7
2,678,566	+		IAI47_12725	0.45	-2.0
2,678,567	-		IAI47_12725	0.45	+1.3
2,678,567	-		IAI47_12725	0.45	+0.6
2,678,581	+		IAI47_12725	0.47	-2.8
2,678,582	-		IAI47_12725	0.47	+1.2
2,678,582	-		IAI47_12725	0.47	+1.0
2,678,604	-		IAI47_12725	0.49	+1.5
2,678,609	+		IAI47_12725	0.50	+2.6
2,678,609	+		IAI47_12725	0.50	-0.2
2,678,610	-		IAI47_12725	0.50	-0.6
2,678,610	-		IAI47_12725	0.50	+0.2
2,678,612	+		IAI47_12725	0.50	+1.2
2,678,613	-		IAI47_12725	0.50	-1.4
2,678,613	-		IAI47_12725	0.50	+2.4
2,678,613	-		IAI47_12725	0.50	+1.6
2,678,613	-		IAI47_12725	0.50	+0.0
2,678,613	-		IAI47_12725	0.50	+1.6
2,678,613	-		IAI47_12725	0.50	+0.5
2,678,613	-		IAI47_12725	0.50	+1.1
2,678,622	+		IAI47_12725	0.51	+1.2
2,678,622	+		IAI47_12725	0.51	+1.0
2,678,623	-		IAI47_12725	0.51	-0.9
2,678,694	+		IAI47_12725	0.58	+2.2
2,678,694	+		IAI47_12725	0.58	+2.0
2,678,695	-		IAI47_12725	0.59	+0.9
2,678,695	-		IAI47_12725	0.59	-2.6
2,678,695	-		IAI47_12725	0.59	-1.4
2,678,697	+		IAI47_12725	0.59	+1.0
2,678,697	+		IAI47_12725	0.59	-1.1
2,678,697	+		IAI47_12725	0.59	-0.7
2,678,698	-		IAI47_12725	0.59	+2.6
2,678,753	+		IAI47_12725	0.65	+1.5
2,678,753	+		IAI47_12725	0.65	+1.6
2,678,753	+		IAI47_12725	0.65	+0.6
2,678,753	+		IAI47_12725	0.65	+2.2
2,678,772	+		IAI47_12725	0.67	+1.5
2,678,772	+		IAI47_12725	0.67	+1.3
2,678,772	+		IAI47_12725	0.67	+0.2
2,678,772	+		IAI47_12725	0.67	+1.3
2,678,773	-		IAI47_12725	0.67	-1.2
2,678,773	-		IAI47_12725	0.67	-0.4
2,678,790	+		IAI47_12725	0.69	+1.3
2,678,790	+		IAI47_12725	0.69	-1.5
2,678,791	-		IAI47_12725	0.69	+0.5
2,678,814	-		IAI47_12725	0.71	-1.0
2,678,832	-		IAI47_12725	0.73	-2.6
2,678,837	+		IAI47_12725	0.73	-0.7
2,678,931	+		IAI47_12725	0.83	+0.8
2,678,932	-		IAI47_12725	0.83	+1.2
2,678,932	-		IAI47_12725	0.83	-0.1
2,679,015	+				-1.4
2,679,015	+				-2.3
2,679,016	-				-2.3
2,679,016	-				+0.6
2,679,016	-				-1.2
2,679,016	-				-2.0
2,679,016	-				+0.3
2,679,075	-				-1.4
2,679,087	+				-1.6
2,679,088	-				-0.0
2,679,100	+				+1.0
2,679,100	+				-0.4
2,679,100	+				+1.8
2,679,101	-				+1.5
2,679,101	-				+1.0
2,679,101	-				+0.5
2,679,150	+				-1.1
2,679,150	+				-1.0
2,679,158	+				+0.8
2,679,192	+				+0.4
2,679,192	+				-0.8
2,679,241	+		IAI47_12730	0.12	-0.3
2,679,242	-		IAI47_12730	0.12	+1.6
2,679,242	-		IAI47_12730	0.12	-0.5
2,679,244	+		IAI47_12730	0.12	-1.7
2,679,245	-		IAI47_12730	0.12	+0.7
2,679,245	-		IAI47_12730	0.12	-1.2
2,679,487	-		IAI47_12730	0.34	-0.7
2,679,549	+		IAI47_12730	0.39	+0.5
2,679,550	-		IAI47_12730	0.39	-1.2
2,679,550	-		IAI47_12730	0.39	+0.5
2,679,593	+		IAI47_12730	0.43	-1.3
2,679,594	-		IAI47_12730	0.43	+1.0
2,679,681	+		IAI47_12730	0.50	-2.0
2,679,682	-		IAI47_12730	0.50	+0.6
2,679,682	-		IAI47_12730	0.50	+2.1
2,679,682	-		IAI47_12730	0.50	+0.7
2,679,766	+		IAI47_12730	0.58	+0.3
2,679,766	+		IAI47_12730	0.58	+0.8
2,679,767	-		IAI47_12730	0.58	+1.9
2,680,047	-		IAI47_12730	0.82	-1.4
2,680,056	+		IAI47_12730	0.83	+0.3
2,680,056	+		IAI47_12730	0.83	-0.7
2,680,056	+		IAI47_12730	0.83	-1.4
2,680,057	-		IAI47_12730	0.83	+0.2
2,680,057	-		IAI47_12730	0.83	+0.2
2,680,057	-		IAI47_12730	0.83	+1.8
2,680,082	+		IAI47_12730	0.85	-0.1
2,680,083	-		IAI47_12730	0.85	+0.9
2,680,083	-		IAI47_12730	0.85	-1.6