Strain Fitness in Pantoea sp. MT58 around IAI47_11930

Experiment: Ying_sugar7 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 2
2,524,685	+				-0.3
2,524,685	+				-1.9
2,524,685	+				+1.6
2,524,686	-				-1.0
2,524,686	-				+0.2
2,524,688	+				+1.6
2,524,689	-				+1.2
2,524,689	-				-0.4
2,524,737	+				-0.2
2,524,750	+				-1.0
2,524,751	-				-1.8
2,524,781	-				-1.0
2,524,792	-				-2.4
2,524,792	-				-3.1
2,524,850	+				-1.6
2,524,851	-				-0.4
2,524,851	-				-1.0
2,524,851	-				-0.4
2,525,083	+		IAI47_11930	0.43	-2.4
2,525,083	+		IAI47_11930	0.43	-2.1
2,525,083	+		IAI47_11930	0.43	-1.2
2,525,083	+		IAI47_11930	0.43	+0.0
2,525,083	+		IAI47_11930	0.43	-2.0
2,525,084	-		IAI47_11930	0.44	-2.0
2,525,084	-		IAI47_11930	0.44	-1.6
2,525,084	-		IAI47_11930	0.44	-0.4
2,525,175	+		IAI47_11930	0.57	-0.7
2,525,254	+		IAI47_11930	0.69	-1.6
2,525,255	-		IAI47_11930	0.69	-2.3
2,525,255	-		IAI47_11930	0.69	+0.0
2,525,301	+		IAI47_11930	0.76	-1.2
2,525,302	-		IAI47_11930	0.76	-2.3
2,525,302	-		IAI47_11930	0.76	-0.7
2,525,302	-		IAI47_11930	0.76	-2.6
2,525,326	+		IAI47_11930	0.80	-1.7
2,525,474	+				-1.5
2,525,475	-				+0.0
2,525,489	+				-2.2
2,525,489	+				-1.4
2,525,490	-				-2.2
2,525,490	-				-0.4
2,525,530	+				+0.6
2,525,530	+				-0.7
2,525,530	+				+0.6
2,525,531	-				-2.5
2,525,531	-				+0.8
2,525,553	+				+0.0
2,525,577	+				-1.0
2,525,577	+				-1.4
2,525,577	+				-1.7
2,525,577	+				-2.3
2,525,577	+				-1.6
2,525,577	+				-1.7
2,525,578	-				-1.6
2,525,578	-				-1.6
2,525,595	-				-0.7
2,525,604	+				-1.7
2,525,605	-				-1.6
2,525,724	+		IAI47_11935	0.18	-2.3
2,525,724	+		IAI47_11935	0.18	-1.0
2,525,725	-		IAI47_11935	0.18	-2.0
2,525,725	-		IAI47_11935	0.18	-1.2
2,525,817	+		IAI47_11935	0.24	-1.6
2,525,828	+		IAI47_11935	0.25	+1.6
2,525,829	-		IAI47_11935	0.25	-1.0
2,525,876	+		IAI47_11935	0.28	-1.2
2,525,876	+		IAI47_11935	0.28	-2.1
2,525,876	+		IAI47_11935	0.28	-1.2
2,525,877	-		IAI47_11935	0.28	+0.0
2,525,877	-		IAI47_11935	0.28	-1.8
2,525,877	-		IAI47_11935	0.28	-2.5
2,526,045	+		IAI47_11935	0.40	+0.0
2,526,045	+		IAI47_11935	0.40	-1.6
2,526,045	+		IAI47_11935	0.40	-1.2
2,526,045	+		IAI47_11935	0.40	+0.0
2,526,045	+		IAI47_11935	0.40	-1.2
2,526,045	+		IAI47_11935	0.40	-2.1
2,526,046	-		IAI47_11935	0.40	-2.2
2,526,046	-		IAI47_11935	0.40	-2.1
2,526,046	-		IAI47_11935	0.40	-0.2
2,526,046	-		IAI47_11935	0.40	-2.0
2,526,046	-		IAI47_11935	0.40	-0.7
2,526,046	-		IAI47_11935	0.40	-2.5
2,526,046	-		IAI47_11935	0.40	-2.1
2,526,067	+		IAI47_11935	0.41	-1.8
2,526,068	-		IAI47_11935	0.41	-2.1
2,526,074	+		IAI47_11935	0.42	-2.3
2,526,074	+		IAI47_11935	0.42	-2.6
2,526,075	-		IAI47_11935	0.42	-1.0
2,526,075	-		IAI47_11935	0.42	+0.2
2,526,180	-		IAI47_11935	0.49	-2.0
2,526,226	+		IAI47_11935	0.52	-2.7
2,526,226	+		IAI47_11935	0.52	-3.4
2,526,227	-		IAI47_11935	0.52	-1.0
2,526,249	+		IAI47_11935	0.54	-1.8
2,526,249	+		IAI47_11935	0.54	-2.3
2,526,250	-		IAI47_11935	0.54	+0.1
2,526,250	-		IAI47_11935	0.54	-1.0
2,526,251	+		IAI47_11935	0.54	-1.8
2,526,251	+		IAI47_11935	0.54	-1.7
2,526,252	-		IAI47_11935	0.54	+0.0
2,526,252	-		IAI47_11935	0.54	-1.0
2,526,313	+		IAI47_11935	0.58	+0.0
2,526,313	+		IAI47_11935	0.58	-1.4
2,526,314	-		IAI47_11935	0.58	-2.6
2,526,314	-		IAI47_11935	0.58	-0.4
2,526,358	+		IAI47_11935	0.61	-4.2
2,526,358	+		IAI47_11935	0.61	-2.1
2,526,358	+		IAI47_11935	0.61	-2.2
2,526,358	+		IAI47_11935	0.61	-0.4
2,526,358	+		IAI47_11935	0.61	-1.4
2,526,359	-		IAI47_11935	0.61	-2.3
2,526,359	-		IAI47_11935	0.61	-2.6
2,526,359	-		IAI47_11935	0.61	-2.1
2,526,398	+		IAI47_11935	0.64	-1.7
2,526,399	-		IAI47_11935	0.64	-1.6
2,526,417	+		IAI47_11935	0.65	-3.0
2,526,418	-		IAI47_11935	0.65	-1.0
2,526,420	+		IAI47_11935	0.66	-3.7
2,526,420	+		IAI47_11935	0.66	-2.1
2,526,420	+		IAI47_11935	0.66	+0.4
2,526,420	+		IAI47_11935	0.66	+2.2
2,526,420	+		IAI47_11935	0.66	-1.6
2,526,421	-		IAI47_11935	0.66	-0.7
2,526,421	-		IAI47_11935	0.66	+0.0
2,526,421	-		IAI47_11935	0.66	-1.0
2,526,438	-		IAI47_11935	0.67	-1.2
2,526,438	-		IAI47_11935	0.67	-0.4
2,526,438	-		IAI47_11935	0.67	-1.4