Strain Fitness in Pantoea sp. MT58 around IAI47_10400

Experiment: Ying_sugar7 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 2
2,204,244	+		IAI47_10395	0.60	+0.4
2,204,244	+		IAI47_10395	0.60	-1.9
2,204,244	+		IAI47_10395	0.60	+0.7
2,204,245	-		IAI47_10395	0.60	+0.1
2,204,245	-		IAI47_10395	0.60	-1.0
2,204,245	-		IAI47_10395	0.60	+1.2
2,204,248	+		IAI47_10395	0.61	-0.7
2,204,248	+		IAI47_10395	0.61	-1.4
2,204,248	+		IAI47_10395	0.61	-1.2
2,204,248	+		IAI47_10395	0.61	-1.0
2,204,248	+		IAI47_10395	0.61	+1.8
2,204,248	+		IAI47_10395	0.61	-0.3
2,204,249	-		IAI47_10395	0.61	+1.2
2,204,249	-		IAI47_10395	0.61	+0.1
2,204,249	-		IAI47_10395	0.61	+0.5
2,204,249	-				+1.4
2,204,249	-		IAI47_10395	0.61	-0.9
2,204,249	-		IAI47_10395	0.61	+1.6
2,204,249	-		IAI47_10395	0.61	+2.4
2,204,249	-		IAI47_10395	0.61	+0.7
2,204,249	-		IAI47_10395	0.61	-0.0
2,204,249	-		IAI47_10395	0.61	-0.7
2,204,282	+		IAI47_10395	0.63	+0.6
2,204,282	+		IAI47_10395	0.63	+0.3
2,204,282	+		IAI47_10395	0.63	-0.6
2,204,282	+		IAI47_10395	0.63	+0.5
2,204,283	-		IAI47_10395	0.63	-1.9
2,204,283	-		IAI47_10395	0.63	+1.8
2,204,283	-		IAI47_10395	0.63	-0.3
2,204,349	+		IAI47_10395	0.66	-1.4
2,204,350	-		IAI47_10395	0.67	+0.4
2,204,350	-		IAI47_10395	0.67	+1.2
2,204,358	-		IAI47_10395	0.67	-0.3
2,204,405	+		IAI47_10395	0.70	-0.3
2,204,405	+		IAI47_10395	0.70	-0.6
2,204,405	+		IAI47_10395	0.70	-1.2
2,204,467	-		IAI47_10395	0.73	-0.7
2,204,547	+		IAI47_10395	0.78	+1.6
2,204,629	-		IAI47_10395	0.83	-0.7
2,204,629	-		IAI47_10395	0.83	+0.9
2,204,667	+		IAI47_10395	0.85	-1.2
2,204,819	-				-1.0
2,204,830	+				-0.0
2,204,830	+				-0.6
2,204,831	-				-0.2
2,204,831	-				-1.6
2,204,840	-				+0.6
2,204,872	+				+1.4
2,204,872	+				-1.6
2,204,872	+				+1.9
2,204,872	+				-1.0
2,204,917	+				+0.8
2,204,917	+				+2.9
2,204,917	+				+0.8
2,204,918	-				-0.9
2,204,918	-				+0.8
2,204,966	+				+2.5
2,204,966	+				+0.8
2,204,967	-				+1.4
2,204,976	-				+0.6
2,204,976	-				+0.8
2,204,976	-				-0.0
2,204,976	-				+1.1
2,204,987	-				-0.7
2,205,080	+				+2.1
2,205,081	-				+0.6
2,205,085	+				-0.4
2,205,085	+				+0.8
2,205,086	-				-0.3
2,205,090	+				+1.4
2,205,090	+				+0.8
2,205,090	+				+1.3
2,205,090	+				+1.4
2,205,091	-				-0.0
2,205,122	+				-0.0
2,205,123	-				+1.0
2,205,138	+				-1.7
2,205,141	+				-2.2
2,205,142	-				-0.3
2,205,159	-				+0.8
2,205,178	-				+2.0
2,205,178	-				-0.7
2,205,193	+				+1.3
2,205,194	-				+1.4
2,205,235	+				-0.6
2,205,236	-				-1.0
2,205,250	+				-0.4
2,205,250	+				+1.6
2,205,251	-				-0.5
2,205,320	+		IAI47_10400	0.13	-1.0
2,205,320	+		IAI47_10400	0.13	-1.6
2,205,320	+		IAI47_10400	0.13	-1.0
2,205,320	+		IAI47_10400	0.13	+0.4
2,205,321	-		IAI47_10400	0.13	-1.6
2,205,324	+		IAI47_10400	0.13	+0.4
2,205,324	+		IAI47_10400	0.13	+0.3
2,205,324	+		IAI47_10400	0.13	+1.6
2,205,325	-		IAI47_10400	0.13	+2.8
2,205,350	+		IAI47_10400	0.15	+0.2
2,205,350	+		IAI47_10400	0.15	+0.4
2,205,350	+		IAI47_10400	0.15	-1.7
2,205,350	+		IAI47_10400	0.15	-0.0
2,205,351	-		IAI47_10400	0.15	-2.0
2,205,410	+		IAI47_10400	0.19	-1.0
2,205,479	+		IAI47_10400	0.24	+0.7
2,205,479	+		IAI47_10400	0.24	-2.8
2,205,479	+		IAI47_10400	0.24	-0.4
2,205,479	+		IAI47_10400	0.24	+0.2
2,205,702	-		IAI47_10400	0.39	-2.7
2,205,816	+		IAI47_10400	0.46	-1.3
2,205,816	+		IAI47_10400	0.46	-0.7
2,205,816	+		IAI47_10400	0.46	+0.9
2,205,817	-		IAI47_10400	0.46	+0.7
2,205,836	+		IAI47_10400	0.48	+1.2
2,205,945	-		IAI47_10400	0.55	+0.4
2,205,945	-		IAI47_10400	0.55	+2.2
2,205,951	-		IAI47_10400	0.55	+1.3
2,206,095	-		IAI47_10400	0.65	-0.2
2,206,095	-		IAI47_10400	0.65	+0.6
2,206,112	+		IAI47_10400	0.66	+1.6
2,206,112	+		IAI47_10400	0.66	-1.0
2,206,113	-		IAI47_10400	0.66	+1.1
2,206,122	+		IAI47_10400	0.67	+1.6
2,206,122	+		IAI47_10400	0.67	+0.5
2,206,122	+		IAI47_10400	0.67	-0.7
2,206,122	+		IAI47_10400	0.67	-1.2
2,206,122	+		IAI47_10400	0.67	+0.6
2,206,122	+		IAI47_10400	0.67	-1.5
2,206,122	+		IAI47_10400	0.67	+0.8
2,206,122	+		IAI47_10400	0.67	-0.7
2,206,122	-		IAI47_10400	0.67	+0.6
2,206,123	-		IAI47_10400	0.67	+0.7
2,206,123	-		IAI47_10400	0.67	-0.2
2,206,123	-		IAI47_10400	0.67	-0.0
2,206,123	-		IAI47_10400	0.67	-2.4
2,206,128	+		IAI47_10400	0.67	+2.1
2,206,128	+		IAI47_10400	0.67	+0.9
2,206,128	+		IAI47_10400	0.67	-1.2
2,206,128	+		IAI47_10400	0.67	-1.9
2,206,128	+		IAI47_10400	0.67	-0.9
2,206,128	+		IAI47_10400	0.67	+0.6
2,206,128	+		IAI47_10400	0.67	+1.0
2,206,129	-		IAI47_10400	0.67	-1.2
2,206,129	-		IAI47_10400	0.67	-1.0
2,206,129	-		IAI47_10400	0.67	-1.2
2,206,129	-		IAI47_10400	0.67	-0.6
2,206,129	-		IAI47_10400	0.67	+0.5
2,206,153	+		IAI47_10400	0.69	-1.4
2,206,153	+		IAI47_10400	0.69	-0.7
2,206,153	+		IAI47_10400	0.69	+2.6
2,206,213	+		IAI47_10400	0.73	-0.6
2,206,213	+		IAI47_10400	0.73	-1.0
2,206,245	-		IAI47_10400	0.75	-1.0
2,206,263	-		IAI47_10400	0.76	-0.7
2,206,314	-		IAI47_10400	0.79	-1.0
2,206,355	+		IAI47_10400	0.82	-0.4
2,206,469	+		IAI47_10400	0.90	-0.7
2,206,469	+		IAI47_10400	0.90	-2.1
2,206,469	+		IAI47_10400	0.90	-0.0
2,206,469	+		IAI47_10400	0.90	+0.1
2,206,469	+		IAI47_10400	0.90	+0.6
2,206,469	+		IAI47_10400	0.90	+1.8
2,206,469	+		IAI47_10400	0.90	+1.6
2,206,469	+		IAI47_10400	0.90	-0.9
2,206,469	+		IAI47_10400	0.90	-1.0
2,206,470	-		IAI47_10400	0.90	-0.7
2,206,470	-		IAI47_10400	0.90	+0.3
2,206,470	-		IAI47_10400	0.90	-0.2
2,206,471	-		IAI47_10400	0.90	+1.6
2,206,502	+				+1.3
2,206,502	+				-0.2
2,206,502	+				-2.5
2,206,502	+				-0.4
2,206,502	+				+0.6
2,206,502	+				-0.7
2,206,502	+				+2.0
2,206,502	+				+0.7
2,206,502	+				-0.2
2,206,502	+				-0.0
2,206,502	+				-0.7
2,206,502	+				+2.3
2,206,502	+				-2.4
2,206,503	-				+0.5
2,206,503	-				-0.7
2,206,503	-				+1.2
2,206,503	-				-0.0
2,206,503	-				-0.5
2,206,506	+				+0.0
2,206,506	+				-1.9
2,206,506	+				+1.2
2,206,506	+				+0.5
2,206,506	+				-2.0
2,206,506	+				+0.9
2,206,506	+				+0.6
2,206,506	+				-1.9
2,206,506	+				-0.1
2,206,506	+				-3.9
2,206,507	-				+0.6
2,206,507	-				-0.0
2,206,507	-				-1.4
2,206,507	-				+1.0
2,206,507	-				+0.3
2,206,507	-				+0.3
2,206,507	-				+1.1
2,206,507	-				+0.1
2,206,507	-				+0.6
2,206,507	-				-0.9
2,206,507	-				+1.1
2,206,507	-				-1.2
2,206,507	-				-2.3
2,206,507	-				+4.0
2,206,512	+				+1.4
2,206,574	+				+0.9
2,206,602	+				+0.6
2,206,602	+				+1.6
2,206,602	+				-0.4
2,206,602	+				+0.1
2,206,602	+				-0.7
2,206,603	-				+1.0
2,206,603	-				-0.0
2,206,603	-				-1.7
2,206,605	+				-1.6
2,206,605	+				+2.9
2,206,605	+				-0.0
2,206,606	-				-1.2
2,206,613	+				-1.2
2,206,613	+				+1.4
2,206,620	+				+1.6
2,206,623	+				+0.8
2,206,623	+				-2.5
2,206,623	+				+1.6
2,206,624	-				-0.7
2,206,624	-				-1.4
2,206,624	-				+0.4
2,206,624	-				-0.2
2,206,624	-				+1.8
2,206,624	-				+0.6
2,206,631	+				-0.7
2,206,654	-				-1.3
2,206,706	+				+0.6
2,206,707	-				+2.1
2,206,746	-				+1.4
2,206,749	+				-1.0
2,206,749	+				+0.1
2,206,749	+				-1.4
2,206,749	+				+0.8
2,206,749	+				+0.3
2,206,749	+				+0.5
2,206,749	+				-0.1
2,206,749	+				+0.6
2,206,750	-				+2.3
2,206,750	-				-1.7
2,206,750	-				+3.2
2,206,750	-				+2.3
2,206,750	-				-1.9
2,206,759	+				+1.2
2,206,759	+				-0.0
2,206,794	+				+0.4
2,206,821	-				-0.0
2,206,859	+				-0.7
2,206,859	+				+0.8
2,206,859	+				+0.7
2,206,859	+				+0.6
2,206,859	+				+0.3
2,206,860	-				-0.0
2,206,860	-				-1.0
2,206,860	-				-0.4
2,206,863	-				+2.4
2,206,863	-				-2.4
2,206,863	-				-2.0
2,206,873	-				+2.2
2,206,935	+				+1.3
2,206,935	+				+1.6
2,206,936	-				+0.8
2,206,936	-				-0.5
2,206,936	-				-0.4
2,206,971	-				+1.2
2,206,971	-				-0.7
2,206,971	-				-2.1
2,207,050	+				+1.4
2,207,050	+				+0.2
2,207,050	+				-1.2
2,207,065	+				+0.3
2,207,065	+				+1.2
2,207,065	+				+0.6
2,207,066	-				-1.7
2,207,066	-				+0.3
2,207,066	-				+0.1
2,207,098	+				-0.6
2,207,099	-				-0.5
2,207,101	+				-1.2
2,207,101	+				-0.1
2,207,101	+				+0.2
2,207,102	-				+0.7
2,207,102	-				-0.7
2,207,102	-				-1.9
2,207,102	-				-1.1
2,207,102	-				-0.9
2,207,102	-				-1.2
2,207,105	+				+0.7
2,207,105	+				-0.1
2,207,105	+				-1.0
2,207,105	+				+2.5
2,207,105	+				+1.6
2,207,105	+				-1.0
2,207,106	-				-1.7
2,207,106	-				+1.0
2,207,106	-				+1.0
2,207,106	-				-0.4
2,207,106	-				+0.6
2,207,106	-				+1.2
2,207,106	-				+0.8
2,207,106	-				+1.7
2,207,106	-				-0.2
2,207,106	-				-0.7
2,207,106	-				-0.6
2,207,106	-				+0.6
2,207,106	-				+0.3
2,207,106	-				-0.4
2,207,106	-				+0.8
2,207,172	+				-0.0
2,207,173	-				-1.0
2,207,173	-				+1.9
2,207,181	+				-0.4
2,207,181	+				-1.9
2,207,182	-				-0.0
2,207,245	-				+0.4
2,207,329	+		IAI47_10405	0.25	+1.0
2,207,329	+		IAI47_10405	0.25	+0.4
2,207,330	-		IAI47_10405	0.25	-2.0
2,207,330	-		IAI47_10405	0.25	-1.4
2,207,330	-		IAI47_10405	0.25	+1.0
2,207,363	+		IAI47_10405	0.32	-0.0
2,207,408	+		IAI47_10405	0.42	-1.7
2,207,409	-		IAI47_10405	0.42	+0.6
2,207,409	-		IAI47_10405	0.42	+2.6
2,207,451	+		IAI47_10405	0.51	+0.3
2,207,452	-		IAI47_10405	0.51	+0.6
2,207,452	-		IAI47_10405	0.51	+0.4
2,207,524	+		IAI47_10405	0.67	-1.7
2,207,524	+		IAI47_10405	0.67	-0.3
2,207,524	+		IAI47_10405	0.67	-1.6
2,207,524	+		IAI47_10405	0.67	-0.0
2,207,524	+		IAI47_10405	0.67	-1.2
2,207,525	-		IAI47_10405	0.67	-0.0
2,207,525	-		IAI47_10405	0.67	-0.1
2,207,568	+		IAI47_10405	0.76	-1.9
2,207,568	+		IAI47_10405	0.76	-1.6
2,207,568	+		IAI47_10405	0.76	+0.1
2,207,568	+		IAI47_10405	0.76	-0.7
2,207,568	+		IAI47_10405	0.76	-1.1
2,207,569	-		IAI47_10405	0.76	+0.5
2,207,569	-		IAI47_10405	0.76	-0.3
2,207,569	-		IAI47_10405	0.76	+0.3
2,207,569	-		IAI47_10405	0.76	-1.6
2,207,569	-		IAI47_10405	0.76	-1.4
2,207,569	-		IAI47_10405	0.76	+1.8
2,207,569	-		IAI47_10405	0.76	+0.9
2,207,570	+		IAI47_10405	0.77	-0.0
2,207,571	-		IAI47_10405	0.77	-0.0
2,207,571	-		IAI47_10405	0.77	-3.0
2,207,571	-		IAI47_10405	0.77	+3.4
2,207,589	+		IAI47_10405	0.81	+0.6
2,207,589	+		IAI47_10405	0.81	-1.9
2,207,590	-		IAI47_10405	0.81	+0.4
2,207,590	-		IAI47_10405	0.81	-0.7
2,207,592	+		IAI47_10405	0.81	+1.7
2,207,592	+		IAI47_10405	0.81	-1.7
2,207,592	+		IAI47_10405	0.81	-0.1
2,207,592	+		IAI47_10405	0.81	-0.2
2,207,592	+		IAI47_10405	0.81	-1.1
2,207,592	+		IAI47_10405	0.81	+1.8
2,207,592	+		IAI47_10405	0.81	-1.7
2,207,592	+		IAI47_10405	0.81	+1.6
2,207,593	-		IAI47_10405	0.82	+1.0
2,207,593	-		IAI47_10405	0.82	-0.2
2,207,593	-		IAI47_10405	0.82	-2.1
2,207,593	-		IAI47_10405	0.82	-0.1